Wall clock time and date at job start Tue Mar 31 2020 11:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 112.85082 * 2 1 4 4 O 1.21281 * 119.99794 * 228.80292 * 3 2 1 5 5 N 1.34770 * 120.00447 * 48.80082 * 3 2 1 6 6 C 1.46499 * 120.00638 * 179.72561 * 5 3 2 7 7 H 1.09003 * 109.32558 * 35.27363 * 6 5 3 8 8 C 1.47095 * 109.33279 * 154.92799 * 6 5 3 9 9 C 1.52568 * 114.32900 * 183.06493 * 8 6 5 10 10 C 1.50880 * 109.35264 * 274.98475 * 9 8 6 11 11 C 1.53946 * 110.09620 * 91.88959 * 10 9 8 12 12 N 1.47603 * 112.14340 * 319.43269 * 11 10 9 13 13 C 1.36936 * 118.64653 * 137.86815 * 12 11 10 14 14 H 1.07993 * 120.00278 * 206.50531 * 13 12 11 15 15 C 1.38815 * 119.99798 * 26.50206 * 13 12 11 16 16 N 1.31624 * 119.99915 * 15.68837 * 15 13 12 17 17 Si 1.86800 * 120.00035 * 195.68462 * 15 13 12 18 18 H 1.48498 * 109.46843 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47020 * 120.00051 * 17 15 13 20 20 H 1.48496 * 109.47274 * 240.00184 * 17 15 13 21 21 C 1.44662 * 122.54040 * 317.86130 * 12 11 10 22 22 C 1.53783 * 113.68969 * 131.26513 * 2 1 3 23 23 C 1.53774 * 87.08237 * 89.12897 * 22 2 1 24 24 F 1.39911 * 113.61387 * 270.88423 * 23 22 2 25 25 F 1.39901 * 113.69346 * 139.99236 * 23 22 2 26 26 C 1.53780 * 113.61510 * 228.80033 * 2 1 3 27 27 H 1.08998 * 109.46740 * 69.66847 * 1 2 3 28 28 H 1.08995 * 109.47288 * 189.67303 * 1 2 3 29 29 H 1.09009 * 109.46857 * 309.66820 * 1 2 3 30 30 H 0.97009 * 119.99710 * 0.02562 * 5 3 2 31 31 H 1.09001 * 108.50945 * 304.31434 * 8 6 5 32 32 H 1.08990 * 108.51245 * 61.96402 * 8 6 5 33 33 H 1.09000 * 109.48802 * 34.94171 * 9 8 6 34 34 H 1.08994 * 109.49223 * 154.99286 * 9 8 6 35 35 H 1.08999 * 109.36341 * 212.08139 * 10 9 8 36 36 H 1.09005 * 109.36777 * 331.69668 * 10 9 8 37 37 H 1.09002 * 108.94631 * 80.12298 * 11 10 9 38 38 H 1.08997 * 108.94745 * 198.74834 * 11 10 9 39 39 H 0.96997 * 119.99803 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.62026 * 330.83848 * 21 12 11 41 41 H 1.09001 * 109.32224 * 210.89567 * 21 12 11 42 42 H 1.09004 * 113.61746 * 203.67581 * 22 2 1 43 43 H 1.08999 * 113.61599 * 334.57912 * 22 2 1 44 44 H 1.08999 * 113.61395 * 25.35015 * 26 2 1 45 45 H 1.08996 * 113.61425 * 156.17090 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9882 1.6788 -0.7903 5 7 1.6685 2.3083 0.8781 6 6 2.2416 3.6565 0.8822 7 1 2.4838 3.9486 -0.1397 8 6 1.2608 4.6009 1.4390 9 6 1.7147 6.0574 1.4285 10 6 2.5399 6.3329 2.6613 11 6 4.0316 6.0967 2.3629 12 7 4.2488 4.9012 1.5248 13 6 5.1636 4.9697 0.5081 14 1 5.0598 4.3299 -0.3557 15 6 6.2243 5.8616 0.5877 16 7 6.5356 6.4126 1.7418 17 14 7.2099 6.2797 -0.9430 18 1 6.6619 5.5332 -2.1038 19 1 7.1204 7.7384 -1.2062 20 1 8.6306 5.9003 -0.7360 21 6 3.5332 3.6620 1.7365 22 6 2.1478 -0.9288 1.0585 23 6 2.0950 -2.0419 -0.0011 24 9 0.8942 -2.7599 -0.0003 25 9 3.2229 -2.8697 -0.0036 26 6 2.1460 -0.9281 -1.0602 27 1 -0.3633 0.3571 -0.9636 28 1 -0.3633 -1.0130 0.1727 29 1 -0.3633 0.6561 0.7911 30 1 0.9705 2.0761 1.5105 31 1 0.3387 4.5216 0.8633 32 1 1.0502 4.3137 2.4691 33 1 2.3162 6.2445 0.5390 34 1 0.8419 6.7103 1.4213 35 1 2.3926 7.3675 2.9710 36 1 2.2224 5.6683 3.4648 37 1 4.4315 6.9689 1.8458 38 1 4.5653 5.9702 3.3048 39 1 7.2766 7.0361 1.7974 40 1 3.2717 3.5659 2.7903 41 1 4.1665 2.8250 1.4424 42 1 3.1609 -0.6487 1.3474 43 1 1.4973 -1.1093 1.9143 44 1 1.4939 -1.1080 -1.9149 45 1 3.1580 -0.6470 -1.3516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034481660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:53 Heat of formation + Delta-G solvation = -96.360769 kcal Electronic energy + Delta-G solvation = -28103.060844 eV Core-core repulsion = 23985.451740 eV Total energy + Delta-G solvation = -4117.609104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.04259 -47.34919 -40.44613 -38.34717 -36.90456 -34.61822 -33.25867 -31.01710 -30.46470 -29.12961 -26.57021 -26.04873 -24.88324 -23.98318 -22.98938 -21.24297 -20.22800 -19.25244 -18.95505 -18.14454 -16.98904 -16.62177 -16.56077 -16.03907 -15.92528 -15.07720 -14.66035 -14.59304 -14.30912 -14.03946 -13.94608 -13.70771 -13.64407 -13.42790 -13.18918 -12.76135 -12.63534 -12.53138 -12.43926 -12.12590 -11.92715 -11.61089 -11.43923 -11.22434 -11.05817 -10.91900 -10.77246 -10.67095 -10.55256 -10.15343 -10.11314 -9.74080 -9.64969 -9.58291 -9.49636 -8.84130 -8.32044 -6.63430 -5.74090 -3.17613 2.72239 3.14168 3.34178 3.41364 3.49612 3.54595 3.57567 3.97014 4.00769 4.23865 4.56295 4.75635 4.84528 5.09259 5.22124 5.24168 5.24760 5.34819 5.39062 5.44023 5.52263 5.53395 5.56656 5.72067 5.77344 5.91081 5.98357 6.01650 6.12239 6.28482 6.36954 6.58270 6.60237 6.68909 6.72770 6.81632 6.91403 7.08600 7.44999 7.72895 7.74515 7.92979 8.45343 8.52431 9.28893 9.93891 10.37824 11.33567 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.003845 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.830981 B = 7280.538299 C = 8380.300287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.528 3.472 4 O -0.522 6.522 5 N -0.717 5.717 6 C 0.113 3.887 7 H 0.088 0.912 8 C -0.111 4.111 9 C -0.101 4.101 10 C -0.143 4.143 11 C 0.176 3.824 12 N -0.584 5.584 13 C -0.255 4.255 14 H 0.070 0.930 15 C 0.005 3.995 16 N -0.906 5.906 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.158 3.842 22 C -0.147 4.147 23 C 0.255 3.745 24 F -0.179 7.179 25 F -0.188 7.188 26 C -0.139 4.139 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.391 0.609 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.024 0.976 39 H 0.252 0.748 40 H 0.031 0.969 41 H 0.047 0.953 42 H 0.119 0.881 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.269 -11.822 0.513 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 C 0.311 3.689 4 O -0.398 6.398 5 N -0.368 5.368 6 C 0.007 3.993 7 H 0.106 0.894 8 C -0.149 4.149 9 C -0.139 4.139 10 C -0.182 4.182 11 C 0.051 3.949 12 N -0.305 5.305 13 C -0.384 4.384 14 H 0.087 0.913 15 C -0.193 4.193 16 N -0.551 5.551 17 Si 0.729 3.271 18 H -0.201 1.201 19 H -0.217 1.217 20 H -0.218 1.218 21 C 0.028 3.972 22 C -0.185 4.185 23 C 0.219 3.781 24 F -0.160 7.160 25 F -0.168 7.168 26 C -0.177 4.177 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.225 0.775 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.138 0.862 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.482 -11.503 -0.005 18.495 hybrid contribution 0.154 -0.056 -0.361 0.396 sum -14.328 -11.559 -0.366 18.413 Atomic orbital electron populations 1.21751 0.90518 1.03772 1.03334 1.21887 0.97616 0.93359 0.98012 1.19770 0.82626 0.85365 0.81096 1.90779 1.30289 1.79668 1.39023 1.46153 1.40885 1.13020 1.36718 1.21300 0.95583 0.79171 1.03288 0.89361 1.20572 0.97787 0.96253 1.00328 1.20829 0.98684 0.93718 1.00664 1.22080 0.99721 0.99814 0.96623 1.21050 0.88685 0.90547 0.94597 1.43609 1.43616 1.06458 1.36790 1.19344 1.02065 1.20538 0.96481 0.91250 1.25011 0.96700 1.01259 0.96377 1.70089 1.29635 1.33036 1.22303 0.86266 0.79777 0.77864 0.83231 1.20125 1.21650 1.21775 1.20922 0.91084 0.90200 0.94982 1.24119 1.05075 0.91974 0.97326 1.21986 0.71684 0.83143 1.01303 1.92985 1.45137 1.80564 1.97286 1.93025 1.50888 1.75696 1.97238 1.24071 1.05846 0.90818 0.96987 0.91086 0.90465 0.91324 0.77502 0.93438 0.92861 0.90459 0.93405 0.92923 0.93724 0.90634 0.95782 0.93840 0.95076 0.93438 0.86248 0.88046 0.88436 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.95 37.16 0.33 -0.73 16 2 C -0.11 -1.09 1.26 -154.85 -0.19 -1.28 16 3 C 0.53 7.63 6.87 -10.99 -0.08 7.56 16 4 O -0.52 -10.17 15.56 5.56 0.09 -10.09 16 5 N -0.72 -9.56 4.94 -55.62 -0.27 -9.83 16 6 C 0.11 1.93 2.34 -69.78 -0.16 1.76 16 7 H 0.09 1.84 7.57 -51.93 -0.39 1.45 16 8 C -0.11 -1.64 4.55 -29.79 -0.14 -1.77 16 9 C -0.10 -1.66 5.51 -28.02 -0.15 -1.82 16 10 C -0.14 -2.56 5.70 -27.30 -0.16 -2.71 16 11 C 0.18 4.09 4.66 -2.94 -0.01 4.07 16 12 N -0.58 -14.24 2.27 -172.03 -0.39 -14.63 16 13 C -0.25 -7.03 9.45 -15.06 -0.14 -7.17 16 14 H 0.07 1.99 7.88 -52.49 -0.41 1.58 16 15 C 0.00 0.13 4.87 -17.43 -0.08 0.04 16 16 N -0.91 -26.20 11.01 55.49 0.61 -25.59 16 17 Si 0.90 22.24 29.58 -169.99 -5.03 17.21 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 C 0.16 3.26 5.23 -4.04 -0.02 3.24 16 22 C -0.15 -1.39 6.99 -25.92 -0.18 -1.57 16 23 C 0.26 2.68 3.26 -25.92 -0.08 2.59 16 24 F -0.18 -1.86 15.52 2.25 0.03 -1.83 16 25 F -0.19 -2.32 17.41 2.25 0.04 -2.28 16 26 C -0.14 -1.49 6.78 -25.92 -0.18 -1.67 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.56 6.20 -51.93 -0.32 0.23 16 29 H 0.07 0.44 7.04 -51.92 -0.37 0.08 16 30 H 0.39 3.87 7.48 -40.82 -0.31 3.57 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.71 7.34 -51.93 -0.38 0.33 16 33 H 0.08 1.51 7.48 -51.93 -0.39 1.12 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.74 7.31 -51.93 -0.38 0.36 16 37 H 0.08 1.97 6.33 -51.93 -0.33 1.64 16 38 H 0.02 0.61 8.03 -51.93 -0.42 0.19 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.03 0.60 8.05 -51.93 -0.42 0.18 16 41 H 0.05 1.08 7.97 -51.93 -0.41 0.67 16 42 H 0.12 1.23 8.09 -51.93 -0.42 0.81 16 43 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 44 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 45 H 0.13 1.58 7.43 -51.93 -0.39 1.19 16 LS Contribution 355.35 15.07 5.36 5.36 Total: -1.00 -31.38 355.35 -7.82 -39.20 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.00 Total: 1.95 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.25 Total: 0.54 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.05 Total: -50.06 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.07 Total: -4.11 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.38 -7.82 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034481660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.163 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds