Wall clock time and date at job start Tue Mar 31 2020 11:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.47257 * 324.99540 * 10 9 7 12 12 C 1.52998 * 109.47539 * 84.99635 * 10 9 7 13 13 C 1.53000 * 109.47573 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.46990 * 300.00080 * 13 12 10 15 15 H 1.08997 * 109.47435 * 299.99827 * 14 13 12 16 16 N 1.46504 * 109.47224 * 179.97438 * 14 13 12 17 17 C 1.34779 * 119.99790 * 84.99532 * 16 14 13 18 18 O 1.21279 * 119.99802 * 0.02562 * 17 16 14 19 19 C 1.50699 * 120.00038 * 179.97438 * 17 16 14 20 20 H 1.09003 * 110.01297 * 58.60989 * 19 17 16 21 21 C 1.54266 * 110.03428 * 297.17283 * 19 17 16 22 22 C 1.54892 * 104.19644 * 217.10261 * 21 19 17 23 23 C 1.54887 * 102.74426 * 37.94198 * 22 21 19 24 24 F 1.39899 * 110.48158 * 203.37848 * 23 22 21 25 25 F 1.39893 * 110.48747 * 80.73775 * 23 22 21 26 26 C 1.53865 * 110.03495 * 180.02562 * 19 17 16 27 27 C 1.53003 * 109.47430 * 60.00089 * 14 13 12 28 28 C 1.53000 * 109.46589 * 299.99894 * 27 14 13 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47032 * 299.99839 * 12 10 9 32 32 H 1.09002 * 109.47236 * 59.99954 * 12 10 9 33 33 H 1.08999 * 109.47225 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.46796 * 59.99784 * 13 12 10 35 35 H 0.96998 * 120.00108 * 265.00672 * 16 14 13 36 36 H 1.08995 * 110.48561 * 335.78469 * 21 19 17 37 37 H 1.09007 * 110.48694 * 98.42405 * 21 19 17 38 38 H 1.09001 * 110.75638 * 279.62823 * 22 21 19 39 39 H 1.09000 * 110.75365 * 156.25611 * 22 21 19 40 40 H 1.08998 * 110.03345 * 238.57283 * 26 19 17 41 41 H 1.09000 * 110.03203 * 359.97438 * 26 19 17 42 42 H 1.08994 * 109.47656 * 180.02562 * 27 14 13 43 43 H 1.08997 * 109.47025 * 59.99488 * 27 14 13 44 44 H 1.08997 * 109.47105 * 299.99544 * 28 27 14 45 45 H 1.09000 * 109.47107 * 179.97438 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9692 -3.5503 -0.5904 12 6 2.4209 -4.0363 1.4355 13 6 3.1853 -5.3616 1.4355 14 6 2.3080 -6.4564 0.8250 15 1 1.3969 -6.5624 1.4138 16 7 3.0401 -7.7253 0.8245 17 6 3.0308 -8.5091 1.9209 18 8 2.4160 -8.1641 2.9077 19 6 3.7834 -9.8147 1.9202 20 1 4.8396 -9.6364 1.7181 21 6 3.1938 -10.7641 0.8568 22 6 3.2765 -12.1656 1.5111 23 6 2.9340 -11.8718 2.9927 24 9 3.4560 -12.8695 3.8230 25 9 1.5495 -11.7659 3.1635 26 6 3.6178 -10.5193 3.2780 27 6 1.9451 -6.0770 -0.6121 28 6 1.1807 -4.7516 -0.6121 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 3.0455 -3.2562 1.8706 32 1 1.5097 -4.1428 2.0243 33 1 3.4441 -5.6317 2.4593 34 1 4.0963 -5.2556 0.8466 35 1 3.5316 -8.0014 0.0352 36 1 2.1571 -10.5026 0.6449 37 1 3.7901 -10.7329 -0.0551 38 1 4.2827 -12.5751 1.4211 39 1 2.5426 -12.8410 1.0715 40 1 4.5937 -10.6837 3.7349 41 1 2.9935 -9.9167 3.9377 42 1 1.3198 -6.8566 -1.0469 43 1 2.8562 -5.9709 -1.2009 44 1 0.2696 -4.8577 -0.0233 45 1 0.9226 -4.4810 -1.6359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034657277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:39 Heat of formation + Delta-G solvation = -154.480073 kcal Electronic energy + Delta-G solvation = -26841.560818 eV Core-core repulsion = 22721.431472 eV Total energy + Delta-G solvation = -4120.129346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.18228 -47.31413 -40.49102 -38.42611 -36.85916 -35.08107 -33.31391 -30.75551 -30.50569 -29.78989 -28.69467 -26.90663 -23.65405 -22.82719 -22.29382 -21.69451 -21.02748 -20.27414 -19.45025 -18.19682 -17.62347 -17.22474 -16.94505 -16.43173 -16.12227 -15.48971 -15.10557 -14.59632 -14.43742 -14.29020 -13.95671 -13.85556 -13.69723 -13.61671 -13.57152 -13.47093 -12.83630 -12.54758 -12.32895 -12.21653 -12.16709 -11.95699 -11.89291 -11.44595 -11.37626 -11.14771 -11.01005 -10.84605 -10.74522 -10.47984 -10.19009 -10.00336 -9.97350 -9.86525 -9.16311 -9.05384 -8.86445 -7.01867 -6.08602 -3.08236 2.40364 2.88347 3.32564 3.49623 3.51809 3.55519 3.62115 3.72998 3.99373 4.40679 4.49103 4.62812 4.66979 4.67823 4.75905 4.80377 4.92175 4.98661 5.15479 5.16052 5.21220 5.44592 5.48979 5.50431 5.51896 5.60727 5.63340 5.65260 5.76767 5.78018 5.93199 6.12815 6.16877 6.20005 6.36069 6.46101 6.52825 6.63102 6.90078 7.05988 7.32371 7.82168 8.03570 8.77246 9.24945 10.11250 10.26401 11.39901 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.038237 B = 0.002230 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.107037 B =12553.604101 C =12676.428100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.329 4.329 8 H 0.063 0.937 9 N -0.737 5.737 10 C 0.183 3.817 11 H 0.047 0.953 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.144 3.856 15 H 0.087 0.913 16 N -0.722 5.722 17 C 0.516 3.484 18 O -0.531 6.531 19 C -0.112 4.112 20 H 0.112 0.888 21 C -0.115 4.115 22 C -0.157 4.157 23 C 0.278 3.722 24 F -0.198 7.198 25 F -0.191 7.191 26 C -0.158 4.158 27 C -0.118 4.118 28 C -0.122 4.122 29 H 0.255 0.745 30 H 0.366 0.634 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.398 0.602 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.015 -26.804 -0.088 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.244 4.244 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.379 5.379 10 C 0.073 3.927 11 H 0.065 0.935 12 C -0.173 4.173 13 C -0.162 4.162 14 C 0.041 3.959 15 H 0.106 0.894 16 N -0.372 5.372 17 C 0.301 3.699 18 O -0.407 6.407 19 C -0.133 4.133 20 H 0.130 0.870 21 C -0.153 4.153 22 C -0.195 4.195 23 C 0.242 3.758 24 F -0.179 7.179 25 F -0.172 7.172 26 C -0.196 4.196 27 C -0.156 4.156 28 C -0.161 4.161 29 H 0.066 0.934 30 H 0.199 0.801 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.232 0.768 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.601 -24.854 0.641 26.652 hybrid contribution 0.157 -1.938 -0.155 1.950 sum 9.758 -26.792 0.487 28.518 Atomic orbital electron populations 1.70879 1.06035 1.28430 1.53676 1.25760 0.97077 1.00981 1.00596 0.83254 0.74222 0.75712 0.75811 1.21053 1.22312 1.22313 1.20027 0.91927 0.85822 1.48223 0.91851 1.42440 1.04795 1.00808 1.89843 1.20168 0.94202 0.85462 0.92851 0.93508 1.22206 0.99764 0.94604 1.00707 1.21884 0.98565 0.95303 1.00461 1.21131 0.95513 0.81811 0.97479 0.89444 1.46106 1.53271 1.21780 1.16031 1.20329 0.81137 0.85202 0.83185 1.90720 1.43329 1.73499 1.33186 1.21858 1.01815 0.93529 0.96128 0.87023 1.22359 1.02920 0.92269 0.97739 1.23462 1.04932 0.99182 0.91911 1.21878 0.75978 0.87542 0.90410 1.93005 1.86246 1.63860 1.74789 1.93041 1.31402 1.96437 1.96289 1.23127 1.03857 0.93934 0.98722 1.21733 1.00834 0.98159 0.94902 1.21772 0.98956 0.93676 1.01683 0.93381 0.80065 0.91751 0.92655 0.92329 0.92275 0.76813 0.89854 0.88990 0.87876 0.88648 0.88051 0.86428 0.91816 0.91506 0.92088 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.40 13.70 55.49 0.76 -28.64 16 2 C -0.05 -1.36 5.50 -17.43 -0.10 -1.46 16 3 Si 1.08 26.04 29.92 -169.99 -5.09 20.95 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.30 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.33 -9.23 9.93 -15.06 -0.15 -9.38 16 8 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.74 -18.37 5.12 -53.43 -0.27 -18.64 16 10 C 0.18 3.55 2.77 -67.94 -0.19 3.37 16 11 H 0.05 0.94 8.08 -51.92 -0.42 0.52 16 12 C -0.13 -2.40 5.50 -26.73 -0.15 -2.54 16 13 C -0.12 -1.77 5.49 -26.73 -0.15 -1.92 16 14 C 0.14 1.80 2.45 -67.93 -0.17 1.64 16 15 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 16 N -0.72 -6.80 5.02 -53.81 -0.27 -7.07 16 17 C 0.52 5.55 6.96 -10.99 -0.08 5.48 16 18 O -0.53 -8.20 14.87 5.56 0.08 -8.12 16 19 C -0.11 -0.76 3.30 -90.66 -0.30 -1.06 16 20 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 21 C -0.12 -0.57 6.31 -25.07 -0.16 -0.73 16 22 C -0.16 -0.83 6.49 -24.74 -0.16 -0.99 16 23 C 0.28 2.41 2.49 -25.10 -0.06 2.35 16 24 F -0.20 -1.93 17.16 2.25 0.04 -1.89 16 25 F -0.19 -2.20 17.17 2.25 0.04 -2.17 16 26 C -0.16 -1.30 6.01 -25.64 -0.15 -1.46 16 27 C -0.12 -1.37 5.39 -26.73 -0.14 -1.52 16 28 C -0.12 -1.90 5.39 -26.73 -0.14 -2.05 16 29 H 0.25 7.81 6.77 -40.82 -0.28 7.53 16 30 H 0.37 9.46 6.63 -40.82 -0.27 9.19 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.40 2.46 8.60 -40.82 -0.35 2.11 16 36 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 37 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 38 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.64 8.11 -51.93 -0.42 0.22 16 41 H 0.12 1.31 6.37 -51.93 -0.33 0.97 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -34.49 363.78 -8.47 -42.96 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.15 Total: 7.40 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -2.09 Total: -10.28 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.22 Total: -54.35 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.08 Total: -8.12 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.08 Total: -4.05 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.09 Total: 20.95 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.49 -8.47 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034657277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.517 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds