Wall clock time and date at job start Tue Mar 31 2020 11:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09009 * 109.47257 * 324.99540 * 10 9 7 12 12 C 1.52998 * 109.47539 * 84.99635 * 10 9 7 13 13 C 1.53000 * 109.47573 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.46990 * 300.00080 * 13 12 10 15 15 H 1.08997 * 109.47435 * 299.99827 * 14 13 12 16 16 N 1.46504 * 109.47224 * 179.97438 * 14 13 12 17 17 C 1.34779 * 119.99790 * 84.99532 * 16 14 13 18 18 O 1.21279 * 119.99802 * 0.02562 * 17 16 14 19 19 C 1.50699 * 120.00038 * 179.97438 * 17 16 14 20 20 H 1.09003 * 110.01297 * 58.60989 * 19 17 16 21 21 C 1.54266 * 110.03428 * 297.17283 * 19 17 16 22 22 C 1.54892 * 104.19644 * 217.10261 * 21 19 17 23 23 C 1.54887 * 102.74426 * 37.94198 * 22 21 19 24 24 F 1.39899 * 110.48158 * 203.37848 * 23 22 21 25 25 F 1.39893 * 110.48747 * 80.73775 * 23 22 21 26 26 C 1.53865 * 110.03495 * 180.02562 * 19 17 16 27 27 C 1.53003 * 109.47430 * 60.00089 * 14 13 12 28 28 C 1.53000 * 109.46589 * 299.99894 * 27 14 13 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47032 * 299.99839 * 12 10 9 32 32 H 1.09002 * 109.47236 * 59.99954 * 12 10 9 33 33 H 1.08999 * 109.47225 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.46796 * 59.99784 * 13 12 10 35 35 H 0.96998 * 120.00108 * 265.00672 * 16 14 13 36 36 H 1.08995 * 110.48561 * 335.78469 * 21 19 17 37 37 H 1.09007 * 110.48694 * 98.42405 * 21 19 17 38 38 H 1.09001 * 110.75638 * 279.62823 * 22 21 19 39 39 H 1.09000 * 110.75365 * 156.25611 * 22 21 19 40 40 H 1.08998 * 110.03345 * 238.57283 * 26 19 17 41 41 H 1.09000 * 110.03203 * 359.97438 * 26 19 17 42 42 H 1.08994 * 109.47656 * 180.02562 * 27 14 13 43 43 H 1.08997 * 109.47025 * 59.99488 * 27 14 13 44 44 H 1.08997 * 109.47105 * 299.99544 * 28 27 14 45 45 H 1.09000 * 109.47107 * 179.97438 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9692 -3.5503 -0.5904 12 6 2.4209 -4.0363 1.4355 13 6 3.1853 -5.3616 1.4355 14 6 2.3080 -6.4564 0.8250 15 1 1.3969 -6.5624 1.4138 16 7 3.0401 -7.7253 0.8245 17 6 3.0308 -8.5091 1.9209 18 8 2.4160 -8.1641 2.9077 19 6 3.7834 -9.8147 1.9202 20 1 4.8396 -9.6364 1.7181 21 6 3.1938 -10.7641 0.8568 22 6 3.2765 -12.1656 1.5111 23 6 2.9340 -11.8718 2.9927 24 9 3.4560 -12.8695 3.8230 25 9 1.5495 -11.7659 3.1635 26 6 3.6178 -10.5193 3.2780 27 6 1.9451 -6.0770 -0.6121 28 6 1.1807 -4.7516 -0.6121 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 3.0455 -3.2562 1.8706 32 1 1.5097 -4.1428 2.0243 33 1 3.4441 -5.6317 2.4593 34 1 4.0963 -5.2556 0.8466 35 1 3.5316 -8.0014 0.0352 36 1 2.1571 -10.5026 0.6449 37 1 3.7901 -10.7329 -0.0551 38 1 4.2827 -12.5751 1.4211 39 1 2.5426 -12.8410 1.0715 40 1 4.5937 -10.6837 3.7349 41 1 2.9935 -9.9167 3.9377 42 1 1.3198 -6.8566 -1.0469 43 1 2.8562 -5.9709 -1.2009 44 1 0.2696 -4.8577 -0.0233 45 1 0.9226 -4.4810 -1.6359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034657277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:38 Heat of formation + Delta-G solvation = -177.506637 kcal Electronic energy + Delta-G solvation = -26842.559325 eV Core-core repulsion = 22721.431472 eV Total energy + Delta-G solvation = -4121.127853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.90283 -48.06096 -41.37095 -39.62216 -37.60213 -36.58843 -34.84026 -32.39158 -31.77258 -30.40259 -29.57158 -28.20088 -25.55374 -23.90955 -23.46274 -22.34966 -22.11144 -21.28367 -20.58794 -19.35060 -18.86649 -18.27979 -17.67940 -17.40860 -16.94682 -16.82395 -16.08816 -15.94489 -15.53516 -15.35708 -15.16749 -15.09256 -15.07604 -14.68006 -14.40058 -14.23875 -14.08500 -13.53976 -13.35937 -13.16708 -12.97807 -12.91977 -12.72108 -12.68978 -12.45522 -12.37730 -12.23861 -12.10097 -11.91458 -11.87242 -11.58337 -11.52657 -11.48063 -11.12803 -10.88311 -10.77736 -10.06470 -9.11410 -8.38614 -5.32034 1.57182 1.59715 1.67521 1.83612 2.07637 2.71569 2.77003 2.92993 3.07521 3.39849 3.42906 3.65658 3.70387 3.80330 3.87047 3.95762 4.10437 4.19817 4.21309 4.29323 4.29863 4.33368 4.42879 4.50119 4.51662 4.57648 4.75204 4.78456 4.88387 4.91091 4.91455 5.04797 5.06552 5.08631 5.14221 5.16671 5.19425 5.43585 5.48535 5.55300 5.61735 6.49876 6.57975 7.11011 7.27820 8.01424 8.13150 9.13469 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.038237 B = 0.002230 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.107037 B =12553.604101 C =12676.428100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.110 4.110 3 Si 1.127 2.873 4 H -0.294 1.294 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.326 4.326 8 H 0.066 0.934 9 N -0.753 5.753 10 C 0.178 3.822 11 H 0.048 0.952 12 C -0.123 4.123 13 C -0.110 4.110 14 C 0.152 3.848 15 H 0.058 0.942 16 N -0.704 5.704 17 C 0.511 3.489 18 O -0.587 6.587 19 C -0.101 4.101 20 H 0.151 0.849 21 C -0.110 4.110 22 C -0.146 4.146 23 C 0.261 3.739 24 F -0.207 7.207 25 F -0.215 7.215 26 C -0.161 4.161 27 C -0.104 4.104 28 C -0.115 4.115 29 H 0.243 0.757 30 H 0.357 0.643 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.420 0.580 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.875 -28.852 -2.228 31.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.300 4.300 3 Si 0.952 3.048 4 H -0.221 1.221 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.457 4.457 8 H 0.084 0.916 9 N -0.394 5.394 10 C 0.070 3.930 11 H 0.066 0.934 12 C -0.164 4.164 13 C -0.150 4.150 14 C 0.047 3.953 15 H 0.077 0.923 16 N -0.355 5.355 17 C 0.298 3.702 18 O -0.467 6.467 19 C -0.122 4.122 20 H 0.169 0.831 21 C -0.147 4.147 22 C -0.184 4.184 23 C 0.225 3.775 24 F -0.188 7.188 25 F -0.196 7.196 26 C -0.199 4.199 27 C -0.142 4.142 28 C -0.154 4.154 29 H 0.053 0.947 30 H 0.189 0.811 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.258 0.742 36 H 0.085 0.915 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.119 0.881 40 H 0.139 0.861 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.068 0.932 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.517 -26.979 -1.536 29.781 hybrid contribution -0.729 -1.364 0.595 1.657 sum 11.787 -28.343 -0.941 30.711 Atomic orbital electron populations 1.70992 1.07220 1.27818 1.56636 1.27203 0.97150 1.04741 1.00930 0.82642 0.73384 0.71665 0.77157 1.22053 1.20683 1.20001 1.20372 0.92257 0.87062 1.46027 0.91563 1.42716 1.04630 1.02084 1.89941 1.20433 0.94461 0.84581 0.93534 0.93439 1.22016 0.98857 0.96216 0.99321 1.21746 0.99041 0.93623 1.00561 1.20791 0.94317 0.82664 0.97532 0.92339 1.45839 1.52731 1.20234 1.16744 1.21109 0.80419 0.86297 0.82334 1.90716 1.45701 1.74922 1.35328 1.21928 1.03339 0.91128 0.95813 0.83124 1.22433 1.02672 0.91090 0.98509 1.23518 1.06571 0.99672 0.88608 1.22457 0.74732 0.87673 0.92652 1.92980 1.86206 1.64207 1.75453 1.92989 1.33502 1.96567 1.96574 1.23139 1.03996 0.93402 0.99404 1.21637 1.01823 0.96257 0.94466 1.21665 0.98353 0.94545 1.00852 0.94660 0.81121 0.94416 0.94730 0.93424 0.90211 0.74175 0.91460 0.84877 0.85145 0.88104 0.86127 0.90064 0.89094 0.89021 0.93188 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.46 13.70 21.65 0.30 -62.17 16 2 C -0.11 -6.46 5.50 84.86 0.47 -5.99 16 3 Si 1.13 52.59 29.92 68.60 2.05 54.65 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.33 -18.48 9.93 84.03 0.83 -17.64 16 8 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 9 N -0.75 -38.37 5.12 -322.95 -1.65 -40.03 16 10 C 0.18 6.90 2.77 44.99 0.12 7.02 16 11 H 0.05 1.85 8.08 -2.38 -0.02 1.83 16 12 C -0.12 -4.58 5.50 30.59 0.17 -4.41 16 13 C -0.11 -3.07 5.49 30.59 0.17 -2.91 16 14 C 0.15 3.55 2.45 44.99 0.11 3.66 16 15 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 16 N -0.70 -11.09 5.02 -442.53 -2.22 -13.32 16 17 C 0.51 10.12 6.96 87.66 0.61 10.73 16 18 O -0.59 -18.52 14.87 -3.03 -0.05 -18.56 16 19 C -0.10 -1.04 3.30 -10.82 -0.04 -1.08 16 20 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 21 C -0.11 -0.63 6.31 31.67 0.20 -0.43 16 22 C -0.15 -1.04 6.49 31.89 0.21 -0.83 16 23 C 0.26 4.23 2.49 31.65 0.08 4.31 16 24 F -0.21 -3.85 17.16 44.97 0.77 -3.08 16 25 F -0.22 -5.09 17.17 44.97 0.77 -4.32 16 26 C -0.16 -2.47 6.01 31.30 0.19 -2.28 16 27 C -0.10 -2.09 5.39 30.60 0.16 -1.93 16 28 C -0.12 -3.49 5.39 30.60 0.16 -3.32 16 29 H 0.24 15.49 6.77 -92.71 -0.63 14.86 16 30 H 0.36 19.21 6.63 -92.71 -0.61 18.59 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.42 3.03 8.60 -92.71 -0.80 2.24 16 36 H 0.07 0.65 7.85 -2.39 -0.02 0.63 16 37 H 0.13 -0.24 8.14 -2.38 -0.02 -0.26 16 38 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.12 1.30 8.11 -2.39 -0.02 1.28 16 41 H 0.08 1.90 6.37 -2.39 -0.02 1.88 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -80.56 363.78 3.16 -77.40 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -0.27 Total: 24.54 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 3.45 Total: -15.12 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -3.58 Total: -115.51 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.56 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 1.54 Total: -7.40 kcal Atomic # 14 Polarization: 52.59 SS G_CDS: 2.05 Total: 54.65 kcal Total: -80.56 3.16 -77.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034657277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.105 kcal (2) G-P(sol) polarization free energy of solvation -80.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds