Wall clock time and date at job start Tue Mar 31 2020 11:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99723 * 2 1 4 4 H 1.48496 * 109.47381 * 269.99916 * 3 2 1 5 5 H 1.48504 * 109.47271 * 29.99922 * 3 2 1 6 6 H 1.48504 * 109.47066 * 149.99810 * 3 2 1 7 7 C 1.38800 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00175 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00084 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46685 * 324.99598 * 10 9 7 12 12 C 1.53004 * 109.47214 * 84.99614 * 10 9 7 13 13 C 1.52997 * 109.46713 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47599 * 299.99579 * 13 12 10 15 15 H 1.09005 * 109.47002 * 300.00785 * 14 13 12 16 16 N 1.46496 * 109.47576 * 180.02562 * 14 13 12 17 17 C 1.34774 * 120.00100 * 84.99620 * 16 14 13 18 18 O 1.21284 * 120.00042 * 0.02562 * 17 16 14 19 19 C 1.50695 * 120.00284 * 179.97438 * 17 16 14 20 20 H 1.09001 * 110.53780 * 57.39387 * 19 17 16 21 21 C 1.54268 * 110.49105 * 180.02562 * 19 17 16 22 22 C 1.53869 * 106.60115 * 142.28987 * 21 19 17 23 23 C 1.54270 * 106.63967 * 359.97438 * 22 21 19 24 24 F 1.39899 * 110.48343 * 95.09487 * 23 22 21 25 25 F 1.39900 * 110.48592 * 217.73348 * 23 22 21 26 26 C 1.54895 * 110.48813 * 294.78415 * 19 17 16 27 27 C 1.52999 * 109.46508 * 60.00220 * 14 13 12 28 28 C 1.53000 * 109.47475 * 299.99885 * 27 14 13 29 29 H 0.97004 * 120.00100 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00270 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47086 * 299.99833 * 12 10 9 32 32 H 1.09002 * 109.46849 * 60.00177 * 12 10 9 33 33 H 1.09004 * 109.46760 * 179.97438 * 13 12 10 34 34 H 1.08993 * 109.47584 * 60.00417 * 13 12 10 35 35 H 0.96997 * 119.99707 * 265.00994 * 16 14 13 36 36 H 1.08999 * 110.03048 * 23.00269 * 21 19 17 37 37 H 1.09001 * 110.06994 * 261.60220 * 21 19 17 38 38 H 1.09002 * 110.03268 * 119.28653 * 22 21 19 39 39 H 1.08995 * 110.03391 * 240.66959 * 22 21 19 40 40 H 1.09001 * 110.75082 * 321.68845 * 26 19 17 41 41 H 1.08991 * 110.75596 * 84.87535 * 26 19 17 42 42 H 1.09002 * 109.47485 * 60.00393 * 27 14 13 43 43 H 1.09005 * 109.47008 * 179.97438 * 27 14 13 44 44 H 1.09004 * 109.47224 * 180.02562 * 28 27 14 45 45 H 1.08993 * 109.47433 * 300.00736 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3879 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.9693 -3.5506 -0.5872 12 6 2.4211 -4.0348 1.4392 13 6 3.1866 -5.3595 1.4402 14 6 2.3104 -6.4555 0.8303 15 1 1.3992 -6.5619 1.4190 16 7 3.0432 -7.7240 0.8318 17 6 3.0336 -8.5065 1.9290 18 8 2.4178 -8.1608 2.9151 19 6 3.7869 -9.8117 1.9305 20 1 4.8410 -9.6451 1.7083 21 6 3.6273 -10.5259 3.2885 22 6 3.5158 -12.0300 2.9838 23 6 3.6108 -12.1784 1.4512 24 9 4.9270 -12.4556 1.0668 25 9 2.7465 -13.1827 1.0020 26 6 3.1668 -10.7967 0.9085 27 6 1.9475 -6.0773 -0.6071 28 6 1.1819 -4.7527 -0.6082 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 3.0457 -3.2543 1.8735 32 1 1.5099 -4.1409 2.0280 33 1 3.4455 -5.6287 2.4642 34 1 4.0977 -5.2531 0.8515 35 1 3.5355 -8.0006 0.0431 36 1 2.7236 -10.1783 3.7892 37 1 4.4981 -10.3355 3.9159 38 1 4.3329 -12.5696 3.4626 39 1 2.5584 -12.4126 3.3372 40 1 2.0798 -10.7151 0.9041 41 1 3.5698 -10.6228 -0.0891 42 1 2.8586 -5.9709 -1.1959 43 1 1.3237 -6.8583 -1.0419 44 1 0.9230 -4.4835 -1.6323 45 1 0.2709 -4.8591 -0.0195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034657278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:42 Heat of formation + Delta-G solvation = -155.697432 kcal Electronic energy + Delta-G solvation = -26679.642787 eV Core-core repulsion = 22559.460652 eV Total energy + Delta-G solvation = -4120.182135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.29172 -47.42494 -40.43508 -38.35909 -36.83108 -34.92596 -33.10331 -30.90648 -30.43845 -29.75947 -28.61452 -27.18607 -23.84605 -22.78685 -22.27646 -21.57059 -20.88153 -20.27601 -19.42736 -18.29772 -17.48528 -17.07321 -16.85779 -16.38909 -16.14643 -15.52496 -15.10383 -14.68116 -14.45744 -14.40221 -13.93784 -13.78517 -13.74786 -13.58311 -13.55890 -13.08865 -12.80785 -12.58764 -12.54139 -12.10943 -12.00561 -11.90228 -11.81944 -11.45866 -11.18675 -11.15573 -11.06343 -10.82736 -10.78735 -10.68497 -10.20224 -10.12860 -9.95471 -9.78175 -9.59063 -9.04550 -8.85925 -6.94517 -5.75812 -3.04381 2.38079 2.90592 3.27494 3.35401 3.43458 3.48712 3.50408 3.69188 3.92670 4.40047 4.54473 4.59539 4.63122 4.73118 4.76594 4.85128 4.93745 5.01408 5.05349 5.24791 5.33747 5.39101 5.50644 5.57542 5.59985 5.65658 5.70336 5.76387 5.82567 5.84994 5.99980 6.21166 6.22880 6.27360 6.45125 6.54270 6.62005 6.70630 6.97486 7.13788 7.34517 7.70573 8.04544 8.43072 9.53988 10.12527 10.46944 11.46947 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.038014 B = 0.002190 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.390222 B =12784.133795 C =12971.509544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.144 3.856 15 H 0.088 0.912 16 N -0.722 5.722 17 C 0.521 3.479 18 O -0.532 6.532 19 C -0.115 4.115 20 H 0.111 0.889 21 C -0.110 4.110 22 C -0.161 4.161 23 C 0.280 3.720 24 F -0.193 7.193 25 F -0.196 7.196 26 C -0.149 4.149 27 C -0.119 4.119 28 C -0.121 4.121 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.398 0.602 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.293 -26.335 1.961 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.040 3.960 15 H 0.106 0.894 16 N -0.372 5.372 17 C 0.306 3.694 18 O -0.408 6.408 19 C -0.136 4.136 20 H 0.129 0.871 21 C -0.148 4.148 22 C -0.199 4.199 23 C 0.244 3.756 24 F -0.174 7.174 25 F -0.177 7.177 26 C -0.187 4.187 27 C -0.157 4.157 28 C -0.160 4.160 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.232 0.768 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.962 -25.947 2.651 27.270 hybrid contribution 0.549 0.662 -0.482 0.986 sum 8.511 -25.284 2.169 26.766 Atomic orbital electron populations 1.69661 1.05093 1.25605 1.57831 1.24739 0.95510 0.97669 1.03153 0.86212 0.78663 0.83979 0.77474 1.21770 1.21803 1.20804 1.19234 0.90954 0.84159 1.42463 0.91246 1.42432 1.05792 0.99799 1.88562 1.20235 0.94278 0.85981 0.92757 0.93632 1.22227 0.99766 0.94487 1.00851 1.21892 0.98581 0.95400 1.00388 1.21149 0.95480 0.81754 0.97577 0.89393 1.46177 1.53116 1.21933 1.16017 1.20179 0.81014 0.85032 0.83188 1.90727 1.43252 1.73611 1.33192 1.22125 1.01380 0.93005 0.97110 0.87103 1.22055 1.05370 0.91517 0.95831 1.23167 1.05775 0.99235 0.91726 1.21875 0.72993 0.85824 0.94941 1.93023 1.36947 1.94703 1.92754 1.93021 1.69666 1.63974 1.91004 1.23424 1.03946 0.91138 1.00201 1.21748 1.00853 0.98314 0.94800 1.21754 0.98942 0.93451 1.01806 0.93543 0.78307 0.91799 0.92490 0.92398 0.92313 0.76830 0.88319 0.90005 0.88832 0.88252 0.87584 0.88201 0.91558 0.91890 0.91342 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -17.95 5.12 -53.42 -0.27 -18.22 16 10 C 0.18 3.39 2.77 -67.92 -0.19 3.20 16 11 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 12 C -0.13 -2.35 5.50 -26.73 -0.15 -2.50 16 13 C -0.12 -1.75 5.49 -26.73 -0.15 -1.89 16 14 C 0.14 1.77 2.45 -67.93 -0.17 1.60 16 15 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 16 N -0.72 -6.78 5.07 -53.81 -0.27 -7.05 16 17 C 0.52 5.41 7.09 -10.99 -0.08 5.33 16 18 O -0.53 -7.77 15.08 5.55 0.08 -7.68 16 19 C -0.11 -0.80 3.26 -90.11 -0.29 -1.10 16 20 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 21 C -0.11 -0.76 6.18 -25.62 -0.16 -0.92 16 22 C -0.16 -0.96 6.41 -25.61 -0.16 -1.13 16 23 C 0.28 2.04 2.50 -25.04 -0.06 1.98 16 24 F -0.19 -1.65 17.17 2.25 0.04 -1.61 16 25 F -0.20 -1.76 17.17 2.25 0.04 -1.72 16 26 C -0.15 -0.91 5.89 -24.71 -0.15 -1.06 16 27 C -0.12 -1.37 5.39 -26.73 -0.14 -1.52 16 28 C -0.12 -1.87 5.39 -26.73 -0.14 -2.01 16 29 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 2.58 8.60 -40.82 -0.35 2.23 16 36 H 0.10 0.86 6.85 -51.93 -0.36 0.50 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.47 8.12 -51.93 -0.42 0.05 16 39 H 0.10 0.54 8.11 -51.93 -0.42 0.12 16 40 H 0.11 0.67 8.05 -51.93 -0.42 0.26 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -32.36 366.18 -8.55 -40.91 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.29 Total: 7.19 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.08 Total: -7.21 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.18 Total: -52.75 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.08 Total: -7.68 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.08 Total: -3.33 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.36 -8.55 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034657278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.789 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds