Wall clock time and date at job start Tue Mar 31 2020 11:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48504 * 109.47219 * 269.99772 * 3 2 1 5 5 H 1.48498 * 109.47396 * 30.00192 * 3 2 1 6 6 H 1.48503 * 109.47099 * 150.00218 * 3 2 1 7 7 C 1.38814 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00366 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99766 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00093 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47199 * 324.99589 * 10 9 7 12 12 C 1.53009 * 109.47303 * 84.99434 * 10 9 7 13 13 C 1.53002 * 109.47090 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47141 * 300.00105 * 13 12 10 15 15 H 1.09001 * 109.47066 * 300.00262 * 14 13 12 16 16 N 1.46496 * 109.47084 * 180.02562 * 14 13 12 17 17 C 1.34777 * 120.00271 * 84.99619 * 16 14 13 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 14 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 14 20 20 C 1.53000 * 109.46912 * 180.02562 * 19 17 16 21 21 C 1.53783 * 113.61182 * 274.13516 * 20 19 17 22 22 C 1.53957 * 87.01875 * 220.05000 * 21 20 19 23 23 F 1.39900 * 113.53872 * 270.80880 * 22 21 20 24 24 F 1.39910 * 113.74108 * 139.94647 * 22 21 20 25 25 C 1.53778 * 87.11265 * 25.36563 * 22 21 20 26 26 C 1.53002 * 109.47405 * 60.00131 * 14 13 12 27 27 C 1.52998 * 109.47381 * 204.99409 * 10 9 7 28 28 H 0.97001 * 120.00098 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00326 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46811 * 300.00478 * 12 10 9 31 31 H 1.08997 * 109.46574 * 60.00365 * 12 10 9 32 32 H 1.09002 * 109.46730 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.46674 * 60.00484 * 13 12 10 34 34 H 0.97005 * 120.00266 * 265.00202 * 16 14 13 35 35 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 36 36 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 37 37 H 1.08990 * 112.85361 * 45.33465 * 20 19 17 38 38 H 1.09003 * 113.61584 * 334.56887 * 21 20 19 39 39 H 1.09000 * 113.61286 * 105.47141 * 21 20 19 40 40 H 1.09000 * 113.61215 * 220.09246 * 25 22 21 41 41 H 1.08993 * 113.69471 * 89.19308 * 25 22 21 42 42 H 1.08997 * 109.46609 * 59.99617 * 26 14 13 43 43 H 1.09002 * 109.47469 * 179.97438 * 26 14 13 44 44 H 1.09002 * 109.46949 * 60.00167 * 27 10 9 45 45 H 1.08997 * 109.47585 * 300.00302 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.5646 -3.2065 0.5891 12 6 4.2587 -2.9752 -1.4371 13 6 5.0232 -4.3005 -1.4370 14 6 6.4102 -4.0892 -0.8267 15 1 6.9581 -3.3537 -1.4157 16 7 7.1423 -5.3580 -0.8272 17 6 7.8253 -5.7416 -1.9239 18 8 7.8342 -5.0361 -2.9103 19 6 8.5781 -7.0472 -1.9246 20 6 9.2614 -7.2412 -3.2797 21 6 8.3550 -7.8896 -4.3393 22 6 9.5880 -8.6977 -4.7833 23 9 10.3537 -8.0559 -5.7626 24 9 9.3033 -10.0297 -5.1029 25 6 10.1290 -8.5087 -3.3563 26 6 6.2636 -3.5849 0.6104 27 6 5.4991 -2.2590 0.6101 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3621 0.0004 30 1 3.2705 -3.1261 -1.8718 31 1 4.8063 -2.2395 -2.0262 32 1 5.1280 -4.6595 -2.4609 33 1 4.4752 -5.0359 -0.8480 34 1 7.1356 -5.9223 -0.0381 35 1 7.8827 -7.8676 -1.7471 36 1 9.3314 -7.0326 -1.1369 37 1 9.7692 -6.3427 -3.6302 38 1 7.5596 -8.5036 -3.9169 39 1 7.9957 -7.1898 -5.0938 40 1 11.1996 -8.3078 -3.3182 41 1 9.8203 -9.2915 -2.6635 42 1 5.7156 -4.3204 1.1993 43 1 7.2517 -3.4348 1.0454 44 1 5.3947 -1.8998 1.6339 45 1 6.0467 -1.5233 0.0210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034672005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:35 Heat of formation + Delta-G solvation = -124.011580 kcal Electronic energy + Delta-G solvation = -26320.025758 eV Core-core repulsion = 22201.217624 eV Total energy + Delta-G solvation = -4118.808133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.13606 -47.47429 -40.33398 -38.69772 -37.66505 -34.99809 -33.13259 -31.29339 -30.52503 -30.30552 -27.61049 -26.69425 -24.07999 -23.07347 -22.47999 -21.11083 -20.57114 -20.26009 -19.64951 -17.86289 -17.62146 -17.17309 -16.95968 -16.60300 -16.22939 -15.72536 -15.05764 -14.84955 -14.44764 -14.34418 -13.91653 -13.86861 -13.78359 -13.72760 -13.49104 -13.01631 -12.97467 -12.84830 -12.63662 -12.18642 -12.02402 -11.80108 -11.67604 -11.60244 -11.33430 -11.17995 -10.91870 -10.87968 -10.81494 -10.68599 -10.25337 -10.21067 -9.88951 -9.83807 -9.57662 -9.05729 -8.88499 -7.26135 -5.76710 -3.12007 2.47845 2.94860 3.10122 3.37755 3.40085 3.41090 3.45816 3.85459 3.91384 3.95651 4.50211 4.59543 4.71614 4.79577 4.89431 4.94545 4.95515 5.00023 5.07865 5.11468 5.22937 5.34602 5.40840 5.45007 5.49751 5.52558 5.59938 5.74362 5.76621 5.82643 5.90030 6.08497 6.15443 6.17123 6.33119 6.43582 6.51408 6.61619 6.87939 7.03374 7.36085 7.99952 8.08520 8.42653 9.21392 9.94174 10.14085 11.41694 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.030438 B = 0.002141 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.693107 B =13076.756503 C =13336.506454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.182 3.818 11 H 0.055 0.945 12 C -0.133 4.133 13 C -0.123 4.123 14 C 0.144 3.856 15 H 0.087 0.913 16 N -0.727 5.727 17 C 0.510 3.490 18 O -0.536 6.536 19 C -0.130 4.130 20 C -0.088 4.088 21 C -0.158 4.158 22 C 0.251 3.749 23 F -0.180 7.180 24 F -0.193 7.193 25 C -0.162 4.162 26 C -0.118 4.118 27 C -0.124 4.124 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.398 0.602 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.556 -19.306 -1.991 29.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.392 5.392 10 C 0.073 3.927 11 H 0.073 0.927 12 C -0.174 4.174 13 C -0.162 4.162 14 C 0.040 3.960 15 H 0.105 0.895 16 N -0.377 5.377 17 C 0.296 3.704 18 O -0.412 6.412 19 C -0.170 4.170 20 C -0.106 4.106 21 C -0.196 4.196 22 C 0.215 3.785 23 F -0.160 7.160 24 F -0.174 7.174 25 C -0.200 4.200 26 C -0.157 4.157 27 C -0.163 4.163 28 H 0.069 0.931 29 H 0.193 0.807 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.232 0.768 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.313 -18.858 -2.729 29.342 hybrid contribution 0.528 0.838 0.133 1.000 sum 22.841 -18.019 -2.597 29.209 Atomic orbital electron populations 1.69703 1.05105 1.25793 1.57669 1.24681 0.95241 0.97227 1.02136 0.86545 0.79172 0.84997 0.77786 1.21115 1.21808 1.20331 1.19072 0.80621 0.94648 1.42810 0.89244 1.42793 1.04004 1.02076 1.90300 1.20212 0.90202 0.89112 0.93213 0.92745 1.22189 1.00032 0.94804 1.00329 1.21883 0.94640 0.99156 1.00565 1.21111 0.92764 0.84775 0.97344 0.89535 1.46185 1.51761 1.23543 1.16237 1.20558 0.79147 0.87649 0.83065 1.90733 1.62290 1.55068 1.33140 1.21625 1.00384 0.96408 0.98602 1.22151 0.96279 0.97774 0.94426 1.24204 0.96332 0.99072 1.00026 1.22154 0.93981 0.76003 0.86356 1.93026 1.76871 1.80958 1.65194 1.93012 1.93840 1.36162 1.94373 1.24185 1.02603 0.99555 0.93670 1.21740 1.00450 0.98436 0.95050 1.21802 0.96900 0.95861 1.01741 0.93097 0.80699 0.91315 0.92613 0.92254 0.92153 0.76850 0.88363 0.88158 0.86784 0.87123 0.88334 0.88688 0.86865 0.91375 0.91847 0.91300 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.12 27.74 -169.99 -4.71 17.40 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 7 C -0.24 -6.73 10.41 -15.06 -0.16 -6.89 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.41 4.92 -53.43 -0.26 -17.67 16 10 C 0.18 3.32 2.77 -67.93 -0.19 3.13 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.13 -2.28 5.50 -26.73 -0.15 -2.42 16 13 C -0.12 -1.68 5.49 -26.73 -0.15 -1.83 16 14 C 0.14 1.68 2.45 -67.93 -0.17 1.51 16 15 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 16 N -0.73 -6.32 5.08 -53.81 -0.27 -6.59 16 17 C 0.51 4.92 7.79 -10.98 -0.09 4.83 16 18 O -0.54 -7.57 15.45 5.56 0.09 -7.48 16 19 C -0.13 -0.69 5.52 -27.88 -0.15 -0.85 16 20 C -0.09 -0.57 3.09 -89.80 -0.28 -0.85 16 21 C -0.16 -1.17 7.44 -25.82 -0.19 -1.36 16 22 C 0.25 2.03 3.27 -25.83 -0.08 1.94 16 23 F -0.18 -1.83 17.38 2.25 0.04 -1.79 16 24 F -0.19 -1.82 17.42 2.25 0.04 -1.78 16 25 C -0.16 -0.83 7.43 -25.92 -0.19 -1.03 16 26 C -0.12 -1.28 5.39 -26.70 -0.14 -1.42 16 27 C -0.12 -1.79 5.39 -26.70 -0.14 -1.93 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.36 8.27 5.66 -40.82 -0.23 8.04 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.40 2.22 8.60 -40.82 -0.35 1.87 16 35 H 0.10 0.34 7.88 -51.93 -0.41 -0.07 16 36 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.11 0.95 7.73 -51.93 -0.40 0.55 16 38 H 0.11 0.66 7.92 -51.93 -0.41 0.24 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.37 8.10 -51.93 -0.42 -0.05 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -33.98 367.63 -8.23 -42.21 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.28 Total: 5.90 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.18 Total: -7.19 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.24 Total: -52.81 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.09 Total: -7.48 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.08 Total: -3.56 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.98 -8.23 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034672005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.805 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds