Wall clock time and date at job start Tue Mar 31 2020 11:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48504 * 109.47219 * 269.99772 * 3 2 1 5 5 H 1.48498 * 109.47396 * 30.00192 * 3 2 1 6 6 H 1.48503 * 109.47099 * 150.00218 * 3 2 1 7 7 C 1.38814 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00366 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99766 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00093 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47199 * 324.99589 * 10 9 7 12 12 C 1.53009 * 109.47303 * 84.99434 * 10 9 7 13 13 C 1.53002 * 109.47090 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47141 * 300.00105 * 13 12 10 15 15 H 1.09001 * 109.47066 * 300.00262 * 14 13 12 16 16 N 1.46496 * 109.47084 * 180.02562 * 14 13 12 17 17 C 1.34777 * 120.00271 * 84.99619 * 16 14 13 18 18 O 1.21278 * 119.99854 * 0.02562 * 17 16 14 19 19 C 1.50703 * 120.00161 * 180.02562 * 17 16 14 20 20 C 1.53000 * 109.46912 * 180.02562 * 19 17 16 21 21 C 1.53783 * 113.61182 * 274.13516 * 20 19 17 22 22 C 1.53957 * 87.01875 * 220.05000 * 21 20 19 23 23 F 1.39900 * 113.53872 * 270.80880 * 22 21 20 24 24 F 1.39910 * 113.74108 * 139.94647 * 22 21 20 25 25 C 1.53778 * 87.11265 * 25.36563 * 22 21 20 26 26 C 1.53002 * 109.47405 * 60.00131 * 14 13 12 27 27 C 1.52998 * 109.47381 * 204.99409 * 10 9 7 28 28 H 0.97001 * 120.00098 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00326 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46811 * 300.00478 * 12 10 9 31 31 H 1.08997 * 109.46574 * 60.00365 * 12 10 9 32 32 H 1.09002 * 109.46730 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.46674 * 60.00484 * 13 12 10 34 34 H 0.97005 * 120.00266 * 265.00202 * 16 14 13 35 35 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 36 36 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 37 37 H 1.08990 * 112.85361 * 45.33465 * 20 19 17 38 38 H 1.09003 * 113.61584 * 334.56887 * 21 20 19 39 39 H 1.09000 * 113.61286 * 105.47141 * 21 20 19 40 40 H 1.09000 * 113.61215 * 220.09246 * 25 22 21 41 41 H 1.08993 * 113.69471 * 89.19308 * 25 22 21 42 42 H 1.08997 * 109.46609 * 59.99617 * 26 14 13 43 43 H 1.09002 * 109.47469 * 179.97438 * 26 14 13 44 44 H 1.09002 * 109.46949 * 60.00167 * 27 10 9 45 45 H 1.08997 * 109.47585 * 300.00302 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.5646 -3.2065 0.5891 12 6 4.2587 -2.9752 -1.4371 13 6 5.0232 -4.3005 -1.4370 14 6 6.4102 -4.0892 -0.8267 15 1 6.9581 -3.3537 -1.4157 16 7 7.1423 -5.3580 -0.8272 17 6 7.8253 -5.7416 -1.9239 18 8 7.8342 -5.0361 -2.9103 19 6 8.5781 -7.0472 -1.9246 20 6 9.2614 -7.2412 -3.2797 21 6 8.3550 -7.8896 -4.3393 22 6 9.5880 -8.6977 -4.7833 23 9 10.3537 -8.0559 -5.7626 24 9 9.3033 -10.0297 -5.1029 25 6 10.1290 -8.5087 -3.3563 26 6 6.2636 -3.5849 0.6104 27 6 5.4991 -2.2590 0.6101 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3621 0.0004 30 1 3.2705 -3.1261 -1.8718 31 1 4.8063 -2.2395 -2.0262 32 1 5.1280 -4.6595 -2.4609 33 1 4.4752 -5.0359 -0.8480 34 1 7.1356 -5.9223 -0.0381 35 1 7.8827 -7.8676 -1.7471 36 1 9.3314 -7.0326 -1.1369 37 1 9.7692 -6.3427 -3.6302 38 1 7.5596 -8.5036 -3.9169 39 1 7.9957 -7.1898 -5.0938 40 1 11.1996 -8.3078 -3.3182 41 1 9.8203 -9.2915 -2.6635 42 1 5.7156 -4.3204 1.1993 43 1 7.2517 -3.4348 1.0454 44 1 5.3947 -1.8998 1.6339 45 1 6.0467 -1.5233 0.0210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034672005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:34 Heat of formation + Delta-G solvation = -146.762596 kcal Electronic energy + Delta-G solvation = -26321.012316 eV Core-core repulsion = 22201.217624 eV Total energy + Delta-G solvation = -4119.794692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.80505 -48.16166 -41.13180 -39.63182 -38.52186 -36.40460 -34.61264 -32.96083 -31.68595 -31.19310 -28.92908 -27.16881 -25.41182 -24.28428 -23.62766 -22.37044 -21.40022 -21.08682 -20.71506 -19.56177 -18.46719 -17.99030 -17.55798 -17.25613 -17.11254 -16.76465 -16.46085 -16.05291 -15.58853 -15.15132 -15.03628 -15.00969 -14.74507 -14.56927 -14.47966 -14.34468 -14.20739 -13.65094 -13.52263 -13.39532 -13.24037 -13.09638 -12.89706 -12.47190 -12.28450 -12.23295 -12.08722 -12.04779 -11.94080 -11.80731 -11.78978 -11.46529 -11.35670 -11.21119 -10.90167 -10.70526 -9.94527 -9.29686 -8.01879 -5.34558 1.37192 1.40789 1.47920 1.77175 2.24850 2.48741 2.55379 2.87999 3.29350 3.29917 3.40742 3.43325 3.59947 3.77531 3.88230 3.97247 4.23524 4.27541 4.35125 4.37066 4.44844 4.52136 4.55181 4.59429 4.59866 4.65675 4.70564 4.78108 4.87515 4.89469 4.93219 4.96311 5.14403 5.16872 5.24861 5.27787 5.33628 5.50230 5.57532 5.64709 5.79025 6.23054 6.71129 7.09223 7.42040 7.86777 8.04962 9.19785 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.030438 B = 0.002141 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.693107 B =13076.756503 C =13336.506454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.954 3.046 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.248 1.248 7 C -0.225 4.225 8 H 0.056 0.944 9 N -0.754 5.754 10 C 0.175 3.825 11 H 0.047 0.953 12 C -0.126 4.126 13 C -0.112 4.112 14 C 0.152 3.848 15 H 0.064 0.936 16 N -0.713 5.713 17 C 0.504 3.496 18 O -0.588 6.588 19 C -0.119 4.119 20 C -0.088 4.088 21 C -0.162 4.162 22 C 0.232 3.768 23 F -0.199 7.199 24 F -0.203 7.203 25 C -0.138 4.138 26 C -0.106 4.106 27 C -0.118 4.118 28 H 0.257 0.743 29 H 0.364 0.636 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.418 0.582 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.143 0.857 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.621 -20.722 0.158 32.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.260 4.260 3 Si 0.782 3.218 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.172 1.172 7 C -0.356 4.356 8 H 0.074 0.926 9 N -0.397 5.397 10 C 0.067 3.933 11 H 0.065 0.935 12 C -0.167 4.167 13 C -0.152 4.152 14 C 0.046 3.954 15 H 0.083 0.917 16 N -0.365 5.365 17 C 0.292 3.708 18 O -0.468 6.468 19 C -0.158 4.158 20 C -0.107 4.107 21 C -0.200 4.200 22 C 0.196 3.804 23 F -0.180 7.180 24 F -0.184 7.184 25 C -0.176 4.176 26 C -0.144 4.144 27 C -0.157 4.157 28 H 0.065 0.935 29 H 0.197 0.803 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.256 0.744 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.108 0.892 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.161 0.839 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.091 0.909 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 25.443 -20.337 -0.545 32.576 hybrid contribution -0.477 1.174 -0.616 1.409 sum 24.966 -19.162 -1.162 31.494 Atomic orbital electron populations 1.69887 1.07123 1.26557 1.60094 1.25518 0.96136 1.01279 1.03035 0.85411 0.78826 0.79716 0.77850 1.21045 1.22282 1.17245 1.19032 0.82748 0.93285 1.40576 0.92603 1.42859 1.02436 1.04182 1.90218 1.20482 0.92119 0.86866 0.93786 0.93508 1.22019 0.98659 0.96765 0.99209 1.21755 0.95927 0.97012 1.00471 1.20792 0.91159 0.85928 0.97485 0.91743 1.45978 1.50820 1.22633 1.17049 1.21393 0.78655 0.88578 0.82141 1.90730 1.64057 1.56948 1.35101 1.21673 1.01161 0.94378 0.98573 1.22055 0.96275 0.97484 0.94862 1.24298 0.96832 0.98899 1.00010 1.22677 0.94813 0.75449 0.87493 1.92982 1.77358 1.81336 1.66289 1.92987 1.93985 1.36817 1.94579 1.24154 1.02920 0.99116 0.91409 1.21657 1.01635 0.96606 0.94514 1.21714 0.94335 0.98239 1.01362 0.93464 0.80294 0.94729 0.93536 0.93480 0.90900 0.74422 0.85381 0.84702 0.89211 0.85324 0.90851 0.87685 0.83907 0.89570 0.88936 0.90865 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.84 13.97 21.65 0.30 -63.54 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.95 45.97 27.74 68.60 1.90 47.87 16 4 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.25 -10.63 6.52 99.48 0.65 -9.98 16 7 C -0.23 -12.86 10.41 84.03 0.87 -11.99 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 9 N -0.75 -34.90 4.92 -322.94 -1.59 -36.49 16 10 C 0.18 6.29 2.77 44.99 0.12 6.42 16 11 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 12 C -0.13 -4.38 5.50 30.60 0.17 -4.22 16 13 C -0.11 -2.97 5.49 30.59 0.17 -2.81 16 14 C 0.15 3.18 2.45 44.99 0.11 3.29 16 15 H 0.06 1.70 7.58 -2.39 -0.02 1.68 16 16 N -0.71 -9.88 5.08 -442.54 -2.25 -12.12 16 17 C 0.50 8.42 7.79 87.66 0.68 9.11 16 18 O -0.59 -16.36 15.45 -3.02 -0.05 -16.40 16 19 C -0.12 -0.77 5.52 29.85 0.16 -0.60 16 20 C -0.09 -0.96 3.09 -10.26 -0.03 -1.00 16 21 C -0.16 -2.26 7.44 31.18 0.23 -2.02 16 22 C 0.23 3.51 3.27 31.18 0.10 3.61 16 23 F -0.20 -4.11 17.38 44.97 0.78 -3.33 16 24 F -0.20 -3.60 17.42 44.97 0.78 -2.81 16 25 C -0.14 -0.99 7.43 31.12 0.23 -0.75 16 26 C -0.11 -1.88 5.39 30.61 0.17 -1.72 16 27 C -0.12 -3.09 5.39 30.61 0.17 -2.93 16 28 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.36 16.21 5.66 -92.71 -0.52 15.69 16 30 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.42 2.54 8.60 -92.70 -0.80 1.74 16 35 H 0.13 0.17 7.88 -2.39 -0.02 0.15 16 36 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.09 1.46 7.73 -2.39 -0.02 1.44 16 38 H 0.13 1.26 7.92 -2.39 -0.02 1.24 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.14 0.21 8.10 -2.39 -0.02 0.19 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -79.27 367.63 3.13 -76.14 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.38 Total: 19.91 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 3.62 Total: -9.23 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -3.53 Total: -112.15 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.05 Total: -16.40 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 1.56 Total: -6.14 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.87 kcal Total: -79.27 3.13 -76.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034672005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.622 kcal (2) G-P(sol) polarization free energy of solvation -79.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds