Wall clock time and date at job start Tue Mar 31 2020 11:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 112.85007 * 2 1 4 4 O 1.21275 * 120.00180 * 230.33535 * 3 2 1 5 5 N 1.34777 * 119.99797 * 50.33411 * 3 2 1 6 6 C 1.46498 * 120.00073 * 180.02562 * 5 3 2 7 7 H 1.08995 * 109.47033 * 34.99726 * 6 5 3 8 8 C 1.52997 * 109.47426 * 154.99826 * 6 5 3 9 9 C 1.53003 * 109.47241 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47087 * 300.00042 * 9 8 6 11 11 H 1.09004 * 109.47434 * 300.00074 * 10 9 8 12 12 N 1.46498 * 109.46963 * 179.97438 * 10 9 8 13 13 C 1.36943 * 119.99752 * 154.72381 * 12 10 9 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 10 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 10 16 16 N 1.31611 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47483 * 90.00178 * 17 15 13 19 19 H 1.48498 * 109.47011 * 210.00042 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99664 * 17 15 13 21 21 C 1.52997 * 109.47114 * 59.99880 * 10 9 8 22 22 C 1.52999 * 109.46797 * 274.99803 * 6 5 3 23 23 C 1.53776 * 113.61527 * 131.19824 * 2 1 3 24 24 C 1.53952 * 87.02019 * 89.23091 * 23 2 1 25 25 F 1.39908 * 113.53530 * 270.80990 * 24 23 2 26 26 F 1.39904 * 113.74367 * 139.94811 * 24 23 2 27 27 C 1.53771 * 87.11139 * 25.36220 * 24 23 2 28 28 H 1.08998 * 109.47352 * 69.66810 * 1 2 3 29 29 H 1.08999 * 109.47268 * 189.66590 * 1 2 3 30 30 H 1.08997 * 109.47065 * 309.66755 * 1 2 3 31 31 H 0.97004 * 119.99878 * 359.97438 * 5 3 2 32 32 H 1.09004 * 109.46812 * 59.99970 * 8 6 5 33 33 H 1.08997 * 109.47293 * 299.99867 * 8 6 5 34 34 H 1.08997 * 109.46962 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.46928 * 60.00077 * 9 8 6 36 36 H 0.97001 * 120.00384 * 335.00737 * 12 10 9 37 37 H 0.97008 * 120.00329 * 179.97438 * 16 15 13 38 38 H 1.09009 * 109.47238 * 59.99946 * 21 10 9 39 39 H 1.08997 * 109.47293 * 179.97438 * 21 10 9 40 40 H 1.08995 * 109.47266 * 299.99780 * 22 6 5 41 41 H 1.09000 * 109.47204 * 59.99838 * 22 6 5 42 42 H 1.08998 * 113.61510 * 203.74720 * 23 2 1 43 43 H 1.09005 * 113.61653 * 334.65278 * 23 2 1 44 44 H 1.09003 * 113.61418 * 220.09069 * 27 24 23 45 45 H 1.09001 * 113.61334 * 89.18930 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3888 0.0000 4 8 2.9685 1.6873 -0.8085 5 7 1.6903 2.2990 0.8985 6 6 2.2587 3.6492 0.8982 7 1 2.4765 3.9515 -0.1261 8 6 1.2552 4.6253 1.5156 9 6 1.8492 6.0353 1.5158 10 6 3.1406 6.0446 2.3363 11 1 2.9225 5.7420 3.3605 12 7 3.7096 7.3945 2.3360 13 6 4.5229 7.7950 3.3624 14 1 4.7484 7.1140 4.1698 15 6 5.0575 9.0760 3.3651 16 7 5.8395 9.4607 4.3513 17 14 4.6668 10.2540 1.9690 18 1 3.4462 11.0308 2.3036 19 1 5.8073 11.1844 1.7726 20 1 4.4363 9.4832 0.7207 21 6 4.1441 5.0685 1.7189 22 6 3.5503 3.6589 1.7184 23 6 2.1460 -0.9280 1.0602 24 6 2.0951 -2.0419 -0.0014 25 9 0.8943 -2.7599 -0.0005 26 9 3.2229 -2.8697 -0.0039 27 6 2.1460 -0.9280 -1.0602 28 1 -0.3634 0.3571 -0.9636 29 1 -0.3634 -1.0131 0.1725 30 1 -0.3633 0.6560 0.7910 31 1 1.0075 2.0604 1.5449 32 1 1.0375 4.3230 2.5399 33 1 0.3351 4.6184 0.9313 34 1 1.1345 6.7305 1.9560 35 1 2.0673 6.3378 0.4916 36 1 3.5070 8.0062 1.6109 37 1 6.2134 10.3558 4.3530 38 1 4.3622 5.3711 0.6946 39 1 5.0642 5.0755 2.3032 40 1 3.3325 3.3567 2.7427 41 1 4.2652 2.9636 1.2785 42 1 3.1585 -0.6477 1.3506 43 1 1.4940 -1.1080 1.9149 44 1 1.4939 -1.1079 -1.9150 45 1 3.1586 -0.6477 -1.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034775714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:57 Heat of formation + Delta-G solvation = -118.456559 kcal Electronic energy + Delta-G solvation = -27020.262327 eV Core-core repulsion = 22901.695077 eV Total energy + Delta-G solvation = -4118.567250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.25285 -47.56296 -40.82422 -38.73782 -37.30314 -35.07443 -33.14888 -31.11873 -30.53948 -29.81007 -27.79919 -26.79095 -24.92306 -23.29670 -22.52331 -21.69525 -20.81225 -19.96177 -19.25336 -18.43090 -17.51661 -17.22479 -16.86553 -16.30635 -16.24682 -15.24721 -15.11094 -14.61225 -14.52379 -14.22751 -14.22021 -13.93112 -13.90057 -13.86904 -13.43917 -13.00865 -12.89523 -12.75485 -12.66671 -12.26389 -12.23145 -12.00998 -11.78553 -11.75153 -11.48177 -11.18671 -10.92960 -10.91621 -10.89777 -10.69445 -10.28849 -10.21448 -9.88420 -9.85445 -9.57939 -9.10642 -8.89743 -7.26832 -5.77250 -3.12629 2.29905 2.80329 3.03696 3.31517 3.37488 3.40535 3.45457 3.70555 3.72952 3.96665 4.43265 4.57254 4.59050 4.74896 4.85174 4.92030 4.97111 5.01066 5.06637 5.15566 5.28546 5.31494 5.43364 5.47327 5.50765 5.52397 5.57997 5.65854 5.72534 5.74949 5.88453 6.06219 6.13111 6.14468 6.31087 6.41468 6.47695 6.59837 6.86528 7.02251 7.28822 7.98462 7.99508 8.42054 9.20828 9.93570 10.13379 11.41175 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.032732 B = 0.002430 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.233656 B =11520.954257 C =11799.569873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.533 3.467 4 O -0.531 6.531 5 N -0.719 5.719 6 C 0.143 3.857 7 H 0.088 0.912 8 C -0.118 4.118 9 C -0.124 4.124 10 C 0.182 3.818 11 H 0.055 0.945 12 N -0.750 5.750 13 C -0.242 4.242 14 H 0.090 0.910 15 C 0.003 3.997 16 N -0.935 5.935 17 Si 0.884 3.116 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.277 1.277 21 C -0.133 4.133 22 C -0.124 4.124 23 C -0.148 4.148 24 C 0.256 3.744 25 F -0.177 7.177 26 F -0.187 7.187 27 C -0.139 4.139 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.398 0.602 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.118 0.882 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.166 -23.071 -8.800 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C 0.317 3.683 4 O -0.407 6.407 5 N -0.369 5.369 6 C 0.040 3.960 7 H 0.106 0.894 8 C -0.157 4.157 9 C -0.163 4.163 10 C 0.073 3.927 11 H 0.073 0.927 12 N -0.392 5.392 13 C -0.372 4.372 14 H 0.108 0.892 15 C -0.192 4.192 16 N -0.583 5.583 17 Si 0.715 3.285 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.203 1.203 21 C -0.174 4.174 22 C -0.163 4.163 23 C -0.186 4.186 24 C 0.220 3.780 25 F -0.158 7.158 26 F -0.168 7.168 27 C -0.177 4.177 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.233 0.767 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.136 0.864 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.408 -22.846 -9.162 28.029 hybrid contribution -0.439 0.600 -0.595 0.953 sum -13.848 -22.245 -9.757 27.961 Atomic orbital electron populations 1.21774 0.90169 1.04112 1.03496 1.21885 0.97900 0.92854 0.98240 1.19867 0.82051 0.85563 0.80788 1.90735 1.31638 1.79563 1.38778 1.46132 1.42731 1.12772 1.35284 1.21156 0.93615 0.80033 1.01207 0.89414 1.21733 0.97550 0.95353 1.01052 1.21796 0.98456 0.94979 1.01092 1.20211 0.89915 0.85640 0.96979 0.92686 1.42795 1.58797 1.10889 1.26671 1.19075 1.20473 0.97665 0.99977 0.89244 1.24675 0.99565 0.97288 0.97706 1.69699 1.36851 1.19297 1.32423 0.86551 0.77590 0.81554 0.82840 1.21141 1.21805 1.20286 1.22183 1.00600 0.92969 1.01606 1.21883 0.96064 0.98833 0.99517 1.24163 1.04957 0.92024 0.97452 1.21977 0.71814 0.83192 1.01028 1.92999 1.45019 1.80514 1.97252 1.93032 1.50845 1.75671 1.97211 1.24073 1.05709 0.90841 0.97118 0.90954 0.90217 0.91174 0.76721 0.91321 0.91769 0.91225 0.92086 0.80693 0.93085 0.92610 0.91283 0.92067 0.92240 0.86380 0.87798 0.88228 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 8.95 37.16 0.33 -0.38 16 2 C -0.11 -0.75 1.25 -154.85 -0.19 -0.95 16 3 C 0.53 5.46 6.88 -10.98 -0.08 5.38 16 4 O -0.53 -7.67 15.57 5.56 0.09 -7.59 16 5 N -0.72 -6.44 4.97 -53.81 -0.27 -6.70 16 6 C 0.14 1.66 2.45 -67.93 -0.17 1.49 16 7 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 8 C -0.12 -1.26 5.39 -26.73 -0.14 -1.41 16 9 C -0.12 -1.76 5.39 -26.73 -0.14 -1.91 16 10 C 0.18 3.29 2.77 -67.93 -0.19 3.10 16 11 H 0.06 1.03 8.08 -51.93 -0.42 0.62 16 12 N -0.75 -17.29 4.92 -53.43 -0.26 -17.55 16 13 C -0.24 -6.72 10.41 -15.06 -0.16 -6.87 16 14 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 15 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 16 N -0.93 -29.26 13.97 55.49 0.78 -28.49 16 17 Si 0.88 22.03 27.74 -169.99 -4.71 17.31 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.28 -6.50 6.52 56.52 0.37 -6.14 16 21 C -0.13 -2.26 5.50 -26.76 -0.15 -2.40 16 22 C -0.12 -1.67 5.49 -26.75 -0.15 -1.82 16 23 C -0.15 -0.96 7.01 -25.83 -0.18 -1.14 16 24 C 0.26 2.02 3.26 -25.83 -0.08 1.94 16 25 F -0.18 -1.47 15.52 2.25 0.03 -1.43 16 26 F -0.19 -1.84 17.42 2.25 0.04 -1.80 16 27 C -0.14 -1.07 6.77 -25.93 -0.18 -1.25 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.39 6.20 -51.93 -0.32 0.07 16 30 H 0.07 0.27 7.11 -51.93 -0.37 -0.10 16 31 H 0.40 2.44 7.59 -40.82 -0.31 2.13 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.36 8.22 5.66 -40.82 -0.23 7.99 16 37 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 38 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.12 0.81 8.09 -51.93 -0.42 0.39 16 43 H 0.10 0.48 8.10 -51.93 -0.42 0.06 16 44 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.13 1.12 7.45 -51.93 -0.39 0.74 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -33.06 361.48 -7.52 -40.58 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.09 Total: 6.43 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.57 Total: -6.20 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.24 Total: -52.74 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.09 Total: -7.59 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.07 Total: -3.23 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.06 -7.52 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034775714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.881 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds