Wall clock time and date at job start Tue Mar 31 2020 11:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39902 * 109.47063 * 2 1 4 4 F 1.39897 * 109.47240 * 239.99607 * 2 1 3 5 5 C 1.53000 * 109.47163 * 119.99953 * 2 1 3 6 6 C 1.50691 * 109.47408 * 180.02562 * 5 2 1 7 7 O 1.21288 * 120.00232 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00358 * 179.97438 * 6 5 2 9 9 C 1.46941 * 120.55499 * 179.97438 * 8 6 5 10 10 C 1.53333 * 108.68764 * 125.67239 * 9 8 6 11 11 C 1.52103 * 109.44416 * 53.30334 * 10 9 8 12 12 C 1.54391 * 110.51280 * 64.09319 * 11 10 9 13 13 C 1.54448 * 102.87090 * 83.32985 * 12 11 10 14 14 N 1.47085 * 107.29889 * 21.50939 * 13 12 11 15 15 C 1.36932 * 125.62582 * 180.96949 * 14 13 12 16 16 H 1.08008 * 119.99900 * 189.80083 * 15 14 13 17 17 C 1.38813 * 120.00606 * 9.79748 * 15 14 13 18 18 N 1.31612 * 120.00346 * 208.95226 * 17 15 14 19 19 Si 1.86795 * 119.99699 * 28.95134 * 17 15 14 20 20 H 1.48502 * 109.47477 * 275.30216 * 19 17 15 21 21 H 1.48501 * 109.47387 * 35.30155 * 19 17 15 22 22 H 1.48497 * 109.47357 * 155.30134 * 19 17 15 23 23 C 1.47569 * 108.74352 * 1.22821 * 14 13 12 24 24 C 1.52107 * 111.60214 * 300.69308 * 11 10 9 25 25 C 1.46925 * 120.55201 * 0.02562 * 8 6 5 26 26 H 1.09000 * 109.47276 * 300.00275 * 1 2 3 27 27 H 1.08998 * 109.47272 * 60.00142 * 1 2 3 28 28 H 1.09001 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47648 * 59.99466 * 5 2 1 30 30 H 1.09005 * 109.47141 * 300.00371 * 5 2 1 31 31 H 1.09002 * 109.60248 * 5.90549 * 9 8 6 32 32 H 1.09005 * 109.72894 * 245.51169 * 9 8 6 33 33 H 1.09001 * 109.47421 * 293.31323 * 10 9 8 34 34 H 1.08997 * 109.48269 * 173.30186 * 10 9 8 35 35 H 1.08999 * 110.72355 * 324.98567 * 12 11 10 36 36 H 1.08999 * 110.73294 * 201.67838 * 12 11 10 37 37 H 1.09005 * 109.88025 * 262.08337 * 13 12 11 38 38 H 1.09002 * 109.88083 * 140.93421 * 13 12 11 39 39 H 0.97003 * 120.00354 * 4.82071 * 18 17 15 40 40 H 1.08997 * 110.37508 * 95.25854 * 23 14 13 41 41 H 1.08992 * 110.38043 * 217.61228 * 23 14 13 42 42 H 1.09001 * 109.47853 * 179.29676 * 24 11 10 43 43 H 1.09003 * 109.47445 * 299.31479 * 24 11 10 44 44 H 1.09004 * 109.60149 * 354.08152 * 25 8 6 45 45 H 1.09000 * 109.60348 * 114.56212 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0400 -0.7212 1.2492 6 6 3.5469 -0.7207 1.2496 7 8 4.1534 -0.1956 0.3400 8 7 4.2208 -1.3037 2.2607 9 6 5.6901 -1.3108 2.2731 10 6 6.1732 -0.7141 3.6004 11 6 5.5103 -1.4475 4.7563 12 6 5.9499 -2.9273 4.7814 13 6 7.2984 -2.8729 5.5324 14 7 7.3128 -1.6280 6.3157 15 6 8.3427 -1.1962 7.1081 16 1 8.2002 -0.3518 7.7664 17 6 9.5699 -1.8435 7.0655 18 7 10.3430 -1.8593 8.1306 19 14 10.1241 -2.6923 5.4966 20 1 9.5530 -4.0622 5.4465 21 1 9.6532 -1.9165 4.3211 22 1 11.6067 -2.7731 5.4745 23 6 6.0318 -0.9245 6.1116 24 6 3.9942 -1.3430 4.6900 25 6 3.4985 -1.9439 3.3685 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6766 -1.7488 1.2494 30 1 1.6766 -0.2074 2.1393 31 1 6.0657 -0.7108 1.4441 32 1 6.0540 -2.3339 2.1781 33 1 5.9091 0.3427 3.6412 34 1 7.2553 -0.8213 3.6747 35 1 6.0872 -3.3061 3.7686 36 1 5.2283 -3.5350 5.3274 37 1 8.1211 -2.8703 4.8173 38 1 7.3865 -3.7310 6.1987 39 1 10.0265 -1.4799 8.9653 40 1 5.3324 -1.1703 6.9106 41 1 6.1934 0.1524 6.0654 42 1 3.5554 -1.8894 5.5249 43 1 3.6994 -0.2951 4.7463 44 1 2.4292 -1.7611 3.2619 45 1 3.6911 -3.0167 3.3593 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035226983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:35 Heat of formation + Delta-G solvation = -134.907464 kcal Electronic energy + Delta-G solvation = -28090.023836 eV Core-core repulsion = 23970.743221 eV Total energy + Delta-G solvation = -4119.280614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.83058 -47.85806 -41.64353 -40.05435 -37.35812 -35.01006 -34.26854 -32.97460 -32.26469 -30.60554 -29.61139 -28.34253 -25.45233 -24.62497 -24.04862 -22.90884 -22.20055 -20.94826 -19.83575 -18.94424 -18.56087 -18.26261 -17.71630 -17.14845 -16.83020 -16.56658 -16.41215 -16.24417 -15.60384 -15.38405 -14.98394 -14.86126 -14.72594 -14.46687 -14.25251 -14.21403 -13.99775 -13.71421 -13.59333 -13.36962 -13.14534 -13.05352 -12.99695 -12.98967 -12.92437 -12.58671 -12.21704 -12.10734 -11.89771 -11.73099 -11.63454 -11.50702 -11.24092 -11.06879 -10.84464 -10.59789 -9.65373 -9.09496 -8.69218 -5.39804 1.36786 1.48443 1.54863 1.68010 1.89071 2.51520 2.84560 2.99093 3.16132 3.33170 3.38999 3.52171 3.56776 3.73331 3.78377 3.95155 4.08001 4.15805 4.22645 4.35269 4.37599 4.41982 4.43171 4.59573 4.64561 4.69269 4.72887 4.76710 4.79692 4.88273 4.89807 4.92102 5.05597 5.07671 5.09547 5.11145 5.25151 5.37442 5.44266 5.55195 5.61595 6.11514 6.37061 6.82500 7.09421 7.49974 8.14981 8.82201 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.031267 B = 0.003139 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.301126 B = 8916.537767 C = 9197.908799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.284 3.716 3 F -0.220 7.220 4 F -0.218 7.218 5 C -0.181 4.181 6 C 0.503 3.497 7 O -0.584 6.584 8 N -0.603 5.603 9 C 0.119 3.881 10 C -0.108 4.108 11 C -0.062 4.062 12 C -0.108 4.108 13 C 0.109 3.891 14 N -0.629 5.629 15 C -0.319 4.319 16 H 0.043 0.957 17 C -0.070 4.070 18 N -0.952 5.952 19 Si 1.098 2.902 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.309 1.309 23 C 0.140 3.860 24 C -0.112 4.112 25 C 0.104 3.896 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.014 0.986 38 H 0.022 0.978 39 H 0.251 0.749 40 H 0.037 0.963 41 H 0.025 0.975 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.127 0.873 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.607 -2.608 -14.476 31.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.247 3.753 3 F -0.201 7.201 4 F -0.199 7.199 5 C -0.220 4.220 6 C 0.292 3.708 7 O -0.464 6.464 8 N -0.336 5.336 9 C -0.004 4.004 10 C -0.147 4.147 11 C -0.063 4.063 12 C -0.145 4.145 13 C -0.016 4.016 14 N -0.356 5.356 15 C -0.448 4.448 16 H 0.061 0.939 17 C -0.265 4.265 18 N -0.595 5.595 19 Si 0.927 3.073 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.238 1.238 23 C 0.015 3.985 24 C -0.150 4.150 25 C -0.017 4.017 26 H 0.131 0.869 27 H 0.097 0.903 28 H 0.134 0.866 29 H 0.181 0.819 30 H 0.176 0.824 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.031 0.969 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.121 0.879 43 H 0.088 0.912 44 H 0.145 0.855 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.973 -3.089 -15.598 30.454 hybrid contribution 0.168 1.556 1.217 1.983 sum -25.805 -1.533 -14.380 29.581 Atomic orbital electron populations 1.22821 0.87434 1.07470 1.06536 1.21481 0.95649 0.74876 0.83265 1.92996 1.91199 1.39060 1.96866 1.92991 1.91181 1.81116 1.54622 1.23045 0.91378 1.07559 1.00030 1.21052 0.91154 0.77247 0.81336 1.90766 1.71318 1.46721 1.37617 1.48183 1.06442 1.55985 1.22967 1.21493 0.80185 1.01712 0.97035 1.21543 0.99731 0.99274 0.94106 1.21070 0.96714 0.95196 0.93283 1.22660 0.94884 0.96164 1.00802 1.21810 0.97954 0.88536 0.93290 1.44936 1.14831 1.21232 1.54607 1.19898 0.92699 1.15413 1.16763 0.93867 1.26861 0.93684 1.00911 1.05077 1.70985 1.42204 1.45753 1.00529 0.83361 0.73900 0.76467 0.73583 1.19539 1.20736 1.23833 1.21805 0.86739 0.94799 0.95182 1.21746 0.91801 1.02687 0.98774 1.22209 0.97981 0.98111 0.83448 0.86851 0.90302 0.86581 0.81894 0.82414 0.91275 0.89985 0.92675 0.93197 0.89113 0.88335 0.96900 0.95970 0.94056 0.94526 0.95677 0.87949 0.91188 0.85480 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.09 9.38 71.98 0.68 -0.41 16 2 C 0.28 4.60 1.85 30.59 0.06 4.65 16 3 F -0.22 -5.43 16.14 44.97 0.73 -4.70 16 4 F -0.22 -5.17 16.15 44.97 0.73 -4.44 16 5 C -0.18 -1.90 3.64 29.84 0.11 -1.79 16 6 C 0.50 11.11 7.46 87.65 0.65 11.76 16 7 O -0.58 -19.63 14.24 -3.05 -0.04 -19.68 16 8 N -0.60 -11.63 2.96 -818.19 -2.42 -14.05 16 9 C 0.12 3.00 6.12 86.41 0.53 3.53 16 10 C -0.11 -3.20 4.87 30.41 0.15 -3.05 16 11 C -0.06 -1.63 0.55 -51.84 -0.03 -1.66 16 12 C -0.11 -2.86 4.92 31.56 0.16 -2.70 16 13 C 0.11 4.42 4.61 86.76 0.40 4.82 16 14 N -0.63 -30.09 3.28 -692.32 -2.27 -32.35 16 15 C -0.32 -18.75 10.41 84.03 0.87 -17.88 16 16 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 17 C -0.07 -4.28 5.41 84.86 0.46 -3.82 16 18 N -0.95 -61.96 13.70 21.65 0.30 -61.67 16 19 Si 1.10 55.17 24.74 68.60 1.70 56.87 16 20 H -0.27 -12.27 6.74 99.48 0.67 -11.60 16 21 H -0.28 -13.30 6.86 99.48 0.68 -12.62 16 22 H -0.31 -15.90 7.11 99.48 0.71 -15.20 16 23 C 0.14 5.17 6.16 86.63 0.53 5.70 16 24 C -0.11 -1.76 4.84 30.43 0.15 -1.61 16 25 C 0.10 1.09 6.08 86.43 0.53 1.62 16 26 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.12 0.09 8.14 -2.39 -0.02 0.08 16 29 H 0.16 0.39 7.93 -2.39 -0.02 0.37 16 30 H 0.16 0.57 7.70 -2.38 -0.02 0.55 16 31 H 0.07 2.08 6.99 -2.39 -0.02 2.06 16 32 H 0.08 1.88 6.56 -2.38 -0.02 1.87 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.83 7.82 -2.39 -0.02 1.81 16 35 H 0.09 2.04 6.18 -2.39 -0.01 2.02 16 36 H 0.10 2.08 7.98 -2.39 -0.02 2.07 16 37 H 0.01 0.58 3.71 -2.38 -0.01 0.57 16 38 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 39 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 40 H 0.04 1.29 8.00 -2.39 -0.02 1.27 16 41 H 0.02 1.00 8.03 -2.39 -0.02 0.98 16 42 H 0.10 1.25 8.09 -2.39 -0.02 1.23 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.13 0.27 5.91 -2.38 -0.01 0.26 16 45 H 0.09 0.77 7.62 -2.39 -0.02 0.75 16 Total: -1.00 -86.55 346.22 4.84 -81.70 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: 0.89 Total: -0.85 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 5.24 Total: -0.83 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -4.39 Total: -108.07 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.04 Total: -19.68 kcal Atomic # 9 Polarization: -10.59 SS G_CDS: 1.45 Total: -9.14 kcal Atomic # 14 Polarization: 55.17 SS G_CDS: 1.70 Total: 56.87 kcal Total: -86.55 4.84 -81.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035226983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.203 kcal (2) G-P(sol) polarization free energy of solvation -86.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds