Wall clock time and date at job start Tue Mar 31 2020 11:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 C 1.52999 * 109.47170 * 2 1 4 4 C 1.50703 * 109.46688 * 120.00016 * 2 1 3 5 5 O 1.21282 * 119.99514 * 122.81598 * 4 2 1 6 6 N 1.34773 * 120.00387 * 302.81087 * 4 2 1 7 7 C 1.46895 * 120.45883 * 354.73215 * 6 4 2 8 8 C 1.53357 * 108.74220 * 124.34501 * 7 6 4 9 9 C 1.52557 * 109.12811 * 52.25433 * 8 7 6 10 10 C 1.52961 * 114.05891 * 75.54699 * 9 8 7 11 11 N 1.47162 * 87.85243 * 139.43973 * 10 9 8 12 12 C 1.36937 * 135.99738 * 153.33446 * 11 10 9 13 13 H 1.08000 * 120.00392 * 0.02562 * 12 11 10 14 14 C 1.38817 * 119.99769 * 180.02562 * 12 11 10 15 15 N 1.31614 * 119.99816 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99926 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47466 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47261 * 119.99840 * 16 14 12 19 19 H 1.48505 * 109.47096 * 239.99881 * 16 14 12 20 20 C 1.47165 * 88.00045 * 333.33849 * 11 10 9 21 21 C 1.52556 * 113.43516 * 302.67624 * 9 8 7 22 22 C 1.46881 * 120.46482 * 174.71049 * 6 4 2 23 23 C 1.53001 * 109.46996 * 239.99929 * 2 1 3 24 24 F 1.39898 * 109.47012 * 59.99706 * 23 2 1 25 25 F 1.39898 * 109.47273 * 180.02562 * 23 2 1 26 26 H 1.08999 * 109.46873 * 304.80160 * 1 2 3 27 27 H 1.08998 * 109.46369 * 64.79951 * 1 2 3 28 28 H 1.08992 * 109.46960 * 184.79921 * 1 2 3 29 29 H 1.08999 * 109.46808 * 175.24102 * 3 2 1 30 30 H 1.08998 * 109.46871 * 295.24094 * 3 2 1 31 31 H 1.09000 * 109.47315 * 55.24147 * 3 2 1 32 32 H 1.09000 * 109.59542 * 4.56521 * 7 6 4 33 33 H 1.09000 * 109.59291 * 244.11807 * 7 6 4 34 34 H 1.09002 * 109.52844 * 292.36760 * 8 7 6 35 35 H 1.08995 * 109.53409 * 172.15392 * 8 7 6 36 36 H 1.09005 * 113.49199 * 24.69095 * 10 9 8 37 37 H 1.09007 * 113.48918 * 254.18888 * 10 9 8 38 38 H 0.96998 * 119.99806 * 179.97438 * 15 14 12 39 39 H 1.08996 * 113.49035 * 141.41677 * 20 11 10 40 40 H 1.08999 * 113.48172 * 271.92445 * 20 11 10 41 41 H 1.08994 * 109.52783 * 177.21023 * 21 9 8 42 42 H 1.08999 * 109.52166 * 297.42024 * 21 9 8 43 43 H 1.08994 * 109.58972 * 355.42782 * 22 6 4 44 44 H 1.09006 * 109.58940 * 115.86849 * 22 6 4 45 45 H 1.09006 * 109.47053 * 300.00372 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7711 -1.6659 1.1199 6 7 1.6607 -0.2840 2.4538 7 6 0.8614 0.9391 2.6050 8 6 -0.4127 0.6015 3.3889 9 6 -0.0302 -0.1185 4.6783 10 6 0.5419 0.8001 5.7593 11 7 -0.2394 0.0355 6.7445 12 6 -0.1325 -0.2492 8.0797 13 1 0.6999 0.1369 8.6493 14 6 -1.0941 -1.0343 8.7011 15 7 -2.1087 -1.5045 8.0071 16 14 -0.9486 -1.4221 10.5226 17 1 0.2729 -0.7790 11.0697 18 1 -2.1434 -0.9036 11.2360 19 1 -0.8595 -2.8926 10.7100 20 6 -1.1860 -0.2889 5.6654 21 6 0.7833 -1.3880 4.4460 22 6 2.0487 -1.0361 3.6543 23 6 2.0401 -0.7213 -1.2492 24 9 1.5737 -0.0618 -2.3915 25 9 3.4391 -0.7218 -1.2490 26 1 -0.3633 0.5865 0.8439 27 1 -0.3632 0.4376 -0.9299 28 1 -0.3633 -1.0240 0.0860 29 1 3.1268 1.4436 0.0853 30 1 1.7481 1.9311 -0.9295 31 1 1.6089 1.9804 0.8443 32 1 0.5939 1.3249 1.6213 33 1 1.4378 1.6874 3.1491 34 1 -1.0507 -0.0449 2.7862 35 1 -0.9469 1.5206 3.6294 36 1 0.2221 1.8376 5.6618 37 1 1.6198 0.7008 5.8880 38 1 -2.7804 -2.0533 8.4412 39 1 -1.5684 -1.3084 5.7148 40 1 -1.9752 0.4528 5.5423 41 1 1.0630 -1.8222 5.4058 42 1 0.1872 -2.1043 3.8807 43 1 2.5631 -1.9514 3.3618 44 1 2.7078 -0.4251 4.2712 45 1 1.6767 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035789003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:03 Heat of formation + Delta-G solvation = -65.183742 kcal Electronic energy + Delta-G solvation = -28438.881460 eV Core-core repulsion = 24322.624293 eV Total energy + Delta-G solvation = -4116.257167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.13470 -47.07064 -40.90055 -39.05092 -36.19589 -35.48356 -32.51487 -31.02991 -30.47173 -27.87688 -27.11402 -26.57894 -25.01276 -24.16739 -23.41032 -22.09825 -20.98054 -19.76852 -17.92811 -17.41323 -17.27033 -16.91743 -16.72909 -16.23798 -15.45461 -15.17339 -14.94200 -14.78717 -14.37650 -14.23786 -13.88795 -13.81226 -13.55777 -13.43801 -13.37491 -12.81680 -12.63943 -12.52166 -12.50149 -12.39307 -12.14976 -11.79210 -11.72304 -11.53760 -11.15364 -11.08227 -10.92007 -10.86524 -10.74226 -10.36840 -10.23255 -9.88171 -9.76725 -9.51248 -9.25814 -8.83675 -8.50684 -6.89957 -5.79926 -3.11807 2.45818 2.79976 3.36409 3.42048 3.44384 3.49917 3.91148 4.06803 4.18402 4.42639 4.50510 4.76156 4.83337 4.92034 4.97155 5.11301 5.16222 5.24309 5.25905 5.33051 5.33975 5.39386 5.44246 5.48997 5.63282 5.70773 5.78316 5.84082 5.88418 5.93374 6.11806 6.20820 6.25947 6.37879 6.55042 6.59323 6.74046 6.82298 7.18115 7.31759 7.34738 7.53795 7.95081 8.02302 9.01163 9.67784 10.61890 11.37525 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.034625 B = 0.003058 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.462810 B = 9153.656739 C = 9371.047664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.134 4.134 3 C -0.161 4.161 4 C 0.527 3.473 5 O -0.538 6.538 6 N -0.594 5.594 7 C 0.081 3.919 8 C -0.117 4.117 9 C -0.115 4.115 10 C 0.127 3.873 11 N -0.608 5.608 12 C -0.217 4.217 13 H 0.080 0.920 14 C -0.007 4.007 15 N -0.919 5.919 16 Si 0.910 3.090 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.166 3.834 21 C -0.093 4.093 22 C 0.114 3.886 23 C 0.288 3.712 24 F -0.203 7.203 25 F -0.192 7.192 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.036 0.964 38 H 0.253 0.747 39 H 0.070 0.930 40 H 0.023 0.977 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 5.455 -18.450 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.138 4.138 3 C -0.218 4.218 4 C 0.314 3.686 5 O -0.415 6.415 6 N -0.326 5.326 7 C -0.041 4.041 8 C -0.156 4.156 9 C -0.116 4.116 10 C 0.000 4.000 11 N -0.333 5.333 12 C -0.344 4.344 13 H 0.098 0.902 14 C -0.204 4.204 15 N -0.566 5.566 16 Si 0.741 3.259 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.217 1.217 20 C 0.041 3.959 21 C -0.131 4.131 22 C -0.008 4.008 23 C 0.233 3.767 24 F -0.184 7.184 25 F -0.174 7.174 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.995 4.808 -18.159 19.437 hybrid contribution -0.112 0.020 1.072 1.078 sum 4.883 4.829 -17.087 18.415 Atomic orbital electron populations 1.22262 0.90232 1.04395 1.04918 1.21825 0.99674 0.98810 0.93473 1.22222 1.02747 0.92256 1.04537 1.19890 0.80616 0.83962 0.84150 1.90738 1.36059 1.28491 1.86237 1.47941 1.52644 1.26317 1.05701 1.22566 0.93045 0.86457 1.02002 1.21799 0.96059 1.01036 0.96739 1.22085 1.00645 0.96194 0.92673 1.22402 0.95640 0.93875 0.88058 1.45567 1.25678 1.56976 1.05069 1.18965 1.07005 1.26071 0.82364 0.90204 1.24771 0.97007 1.00503 0.98118 1.69830 1.13456 1.38671 1.34661 0.86070 0.77273 0.77831 0.84735 1.20473 1.21780 1.21688 1.22039 0.90423 1.00313 0.83170 1.21417 0.94704 0.96409 1.00572 1.21749 0.97589 0.96806 0.84634 1.21427 0.76159 0.97143 0.81923 1.92959 1.88398 1.83893 1.53168 1.93000 1.30233 1.97548 1.96579 0.88851 0.90358 0.91122 0.91133 0.90485 0.89411 0.87778 0.90909 0.91532 0.90536 0.95269 0.94537 0.93738 0.91177 0.95909 0.89286 0.92130 0.89303 0.91292 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.06 37.16 0.30 -0.94 16 2 C -0.13 -1.30 0.46 -155.65 -0.07 -1.38 16 3 C -0.16 -1.33 7.89 37.16 0.29 -1.03 16 4 C 0.53 6.84 6.38 -10.99 -0.07 6.77 16 5 O -0.54 -8.83 14.77 5.56 0.08 -8.75 16 6 N -0.59 -7.37 2.93 -172.63 -0.51 -7.88 16 7 C 0.08 0.83 4.34 -3.64 -0.02 0.81 16 8 C -0.12 -1.43 4.95 -26.77 -0.13 -1.57 16 9 C -0.11 -1.90 0.84 -155.02 -0.13 -2.03 16 10 C 0.13 2.39 7.63 -8.20 -0.06 2.33 16 11 N -0.61 -14.84 3.55 -184.66 -0.66 -15.49 16 12 C -0.22 -5.92 10.74 -15.06 -0.16 -6.08 16 13 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 14 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 15 N -0.92 -26.70 11.51 55.49 0.64 -26.06 16 16 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 C 0.17 3.66 6.54 -8.21 -0.05 3.61 16 21 C -0.09 -1.51 5.27 -26.77 -0.14 -1.65 16 22 C 0.11 1.61 6.32 -3.65 -0.02 1.59 16 23 C 0.29 3.03 3.80 37.16 0.14 3.17 16 24 F -0.20 -2.06 16.13 2.25 0.04 -2.03 16 25 F -0.19 -2.55 15.92 2.25 0.04 -2.51 16 26 H 0.09 0.67 4.00 -51.93 -0.21 0.46 16 27 H 0.08 0.50 7.67 -51.93 -0.40 0.10 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.66 7.94 -51.93 -0.41 0.25 16 30 H 0.08 0.56 7.67 -51.93 -0.40 0.16 16 31 H 0.09 0.60 4.81 -51.93 -0.25 0.36 16 32 H 0.10 0.81 2.22 -51.93 -0.12 0.69 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.78 7.64 -51.93 -0.40 0.38 16 35 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 37 H 0.04 0.67 7.53 -51.92 -0.39 0.28 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 39 H 0.07 1.75 7.11 -51.93 -0.37 1.38 16 40 H 0.02 0.52 8.09 -51.93 -0.42 0.10 16 41 H 0.09 1.70 7.95 -51.93 -0.41 1.29 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 44 H 0.07 0.96 7.60 -51.93 -0.39 0.57 16 45 H 0.11 1.07 8.13 -51.93 -0.42 0.65 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -31.99 346.50 -7.00 -38.99 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.60 Total: -1.60 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -0.22 Total: 3.31 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.52 Total: -49.43 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.08 Total: -8.75 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.99 -7.00 -38.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035789003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.191 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds