Wall clock time and date at job start Tue Mar 31 2020 11:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46964 * 2 1 4 4 C 1.50703 * 109.47008 * 119.99387 * 2 1 3 5 5 O 1.21282 * 119.99457 * 118.05118 * 4 2 1 6 6 N 1.34766 * 120.00414 * 298.05114 * 4 2 1 7 7 C 1.46592 * 119.68730 * 185.49315 * 6 4 2 8 8 C 1.53955 * 110.57935 * 132.15322 * 7 6 4 9 9 C 1.51516 * 107.34508 * 51.05559 * 8 7 6 10 10 H 1.08999 * 108.80895 * 53.43807 * 9 8 7 11 11 C 1.55098 * 107.77158 * 295.29843 * 9 8 7 12 12 H 1.09001 * 111.33025 * 309.00013 * 11 9 8 13 13 C 1.53738 * 100.32335 * 191.11478 * 11 9 8 14 14 C 1.55285 * 101.84240 * 38.94708 * 13 11 9 15 15 N 1.45468 * 117.34908 * 178.09331 * 9 8 7 16 16 C 1.36931 * 126.40744 * 329.41593 * 15 9 8 17 17 H 1.08003 * 119.99970 * 7.53680 * 16 15 9 18 18 C 1.38808 * 120.00225 * 187.53837 * 16 15 9 19 19 N 1.31621 * 120.00429 * 204.60300 * 18 16 15 20 20 Si 1.86807 * 120.00016 * 24.60747 * 18 16 15 21 21 H 1.48504 * 109.46815 * 275.62968 * 20 18 16 22 22 H 1.48494 * 109.47112 * 155.62871 * 20 18 16 23 23 H 1.48504 * 109.46941 * 35.62826 * 20 18 16 24 24 C 1.47798 * 119.83491 * 5.80102 * 6 4 2 25 25 C 1.52996 * 109.47371 * 239.99704 * 2 1 3 26 26 F 1.39899 * 109.46738 * 300.00174 * 25 2 1 27 27 F 1.39898 * 109.47010 * 59.99651 * 25 2 1 28 28 H 1.09006 * 109.47285 * 291.29995 * 1 2 3 29 29 H 1.08996 * 109.47379 * 51.30138 * 1 2 3 30 30 H 1.08998 * 109.47168 * 171.30684 * 1 2 3 31 31 H 1.09000 * 109.46921 * 201.05451 * 3 2 1 32 32 H 1.09006 * 109.47156 * 321.05203 * 3 2 1 33 33 H 1.08996 * 109.47581 * 81.05570 * 3 2 1 34 34 H 1.09000 * 109.25306 * 11.87057 * 7 6 4 35 35 H 1.09006 * 109.23016 * 252.41671 * 7 6 4 36 36 H 1.08996 * 109.87995 * 291.59668 * 8 7 6 37 37 H 1.08999 * 109.94460 * 170.55188 * 8 7 6 38 38 H 1.08995 * 110.95731 * 280.80840 * 13 11 9 39 39 H 1.09005 * 110.95127 * 157.08273 * 13 11 9 40 40 H 1.08995 * 109.91990 * 218.16638 * 14 13 11 41 41 H 1.09010 * 110.08453 * 96.96084 * 14 13 11 42 42 H 0.97000 * 119.99351 * 5.13305 * 19 18 16 43 43 H 1.09002 * 110.64548 * 112.78087 * 24 6 4 44 44 H 1.09005 * 109.73116 * 351.05277 * 24 6 4 45 45 H 1.08996 * 109.47201 * 179.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7001 -1.7166 1.1196 6 7 1.7395 -0.2273 2.4542 7 6 2.3301 -0.8518 3.6416 8 6 2.9169 0.2180 4.5805 9 6 1.8394 1.2584 4.8090 10 1 0.9350 0.7577 5.1545 11 6 1.5497 1.9465 3.4495 12 1 2.4688 2.2923 2.9764 13 6 0.6836 3.1273 3.9173 14 6 1.3920 3.5392 5.2364 15 7 2.1524 2.3584 5.7080 16 6 2.9965 2.3125 6.7852 17 1 3.5969 1.4327 6.9638 18 6 3.0806 3.3968 7.6477 19 7 4.1701 3.5873 8.3613 20 14 1.6475 4.5859 7.7959 21 1 1.7340 5.6022 6.7166 22 1 1.6993 5.2614 9.1173 23 1 0.3699 3.8391 7.6715 24 6 0.8209 0.9225 2.5904 25 6 2.0400 -0.7213 -1.2492 26 9 1.5737 -2.0403 -1.2490 27 9 1.5737 -0.0619 -2.3914 28 1 -0.3634 0.3733 0.9575 29 1 -0.3634 0.6425 -0.8020 30 1 -0.3633 -1.0158 -0.1553 31 1 3.0653 1.4654 -0.3692 32 1 1.4075 2.0515 -0.6460 33 1 2.0104 1.8384 1.0151 34 1 3.1231 -1.5329 3.3327 35 1 1.5609 -1.4130 4.1724 36 1 3.7872 0.6815 4.1162 37 1 3.2011 -0.2360 5.5298 38 1 -0.3408 2.8078 4.1084 39 1 0.7079 3.9402 3.1915 40 1 0.6507 3.8258 5.9822 41 1 2.0731 4.3701 5.0518 42 1 4.9418 3.0144 8.2304 43 1 -0.1061 0.6184 3.0765 44 1 0.6087 1.3424 1.6071 45 1 3.1300 -0.7209 -1.2494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036815223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:39 Heat of formation + Delta-G solvation = -88.767307 kcal Electronic energy + Delta-G solvation = -28826.900951 eV Core-core repulsion = 24709.621124 eV Total energy + Delta-G solvation = -4117.279827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.15327 -47.08999 -41.01239 -38.77178 -36.04060 -35.45953 -32.83693 -31.80088 -30.30545 -28.46780 -27.89630 -26.63526 -25.39515 -23.61807 -23.19155 -21.54921 -20.69925 -20.02198 -19.11610 -17.74626 -17.42820 -17.27928 -16.88913 -16.24395 -15.69547 -15.29209 -15.19618 -15.08860 -14.42441 -14.17668 -13.99834 -13.85001 -13.49333 -13.46443 -13.35722 -13.03371 -12.88456 -12.61219 -12.54134 -12.46402 -12.30555 -11.96377 -11.92365 -11.64211 -11.43679 -11.16048 -10.95567 -10.89883 -10.69947 -10.60625 -10.19962 -10.04482 -9.65663 -9.50025 -9.19279 -8.76559 -8.58522 -7.12072 -6.38120 -3.22607 2.38087 2.69721 3.38521 3.45886 3.47455 3.64989 3.84456 4.00217 4.16470 4.47641 4.54858 4.58956 4.76351 4.82978 4.92056 4.98607 5.02474 5.15335 5.24370 5.27803 5.31319 5.31560 5.35317 5.38623 5.50037 5.55123 5.62598 5.73175 5.74241 5.78796 5.92771 5.97131 6.01878 6.13181 6.22248 6.37222 6.43485 6.60773 6.68759 6.83686 7.20580 7.63135 7.93921 8.28695 8.97342 9.55445 10.20954 11.11698 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027811 B = 0.003675 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.565325 B = 7617.270646 C = 8127.908819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.134 4.134 3 C -0.160 4.160 4 C 0.528 3.472 5 O -0.536 6.536 6 N -0.599 5.599 7 C 0.117 3.883 8 C -0.126 4.126 9 C 0.169 3.831 10 H 0.023 0.977 11 C -0.130 4.130 12 H 0.087 0.913 13 C -0.119 4.119 14 C 0.105 3.895 15 N -0.600 5.600 16 C -0.327 4.327 17 H 0.080 0.920 18 C -0.017 4.017 19 N -0.919 5.919 20 Si 1.059 2.941 21 H -0.294 1.294 22 H -0.300 1.300 23 H -0.291 1.291 24 C 0.097 3.903 25 C 0.288 3.712 26 F -0.193 7.193 27 F -0.202 7.202 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.046 0.954 42 H 0.263 0.737 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 -4.674 -18.550 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.138 4.138 3 C -0.217 4.217 4 C 0.314 3.686 5 O -0.413 6.413 6 N -0.331 5.331 7 C -0.006 4.006 8 C -0.165 4.165 9 C 0.061 3.939 10 H 0.040 0.960 11 C -0.151 4.151 12 H 0.105 0.895 13 C -0.157 4.157 14 C -0.019 4.019 15 N -0.326 5.326 16 C -0.453 4.453 17 H 0.098 0.902 18 C -0.217 4.217 19 N -0.559 5.559 20 Si 0.892 3.108 21 H -0.222 1.222 22 H -0.228 1.228 23 H -0.219 1.219 24 C -0.025 4.025 25 C 0.234 3.766 26 F -0.174 7.174 27 F -0.183 7.183 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.560 -3.919 -17.666 20.018 hybrid contribution 0.423 -1.339 -0.795 1.614 sum -8.137 -5.258 -18.461 20.849 Atomic orbital electron populations 1.22307 0.90597 1.04267 1.04827 1.21823 1.00020 0.98556 0.93401 1.22251 1.02404 0.91775 1.05309 1.19931 0.80134 0.84312 0.84209 1.90736 1.39811 1.24474 1.86298 1.48124 1.46319 1.32919 1.05707 1.21688 0.98442 0.95516 0.84917 1.21847 0.99217 0.96460 0.98998 1.20538 0.95226 0.89655 0.88483 0.95970 1.22691 0.99421 0.95380 0.97565 0.89489 1.22409 0.98525 0.97264 0.97539 1.22178 0.94562 0.91694 0.93500 1.44496 1.52955 1.04842 1.30317 1.20033 1.17530 1.04273 1.03485 0.90201 1.25717 1.02264 0.98058 0.95655 1.70886 1.02214 1.38189 1.44597 0.83967 0.75863 0.75801 0.75129 1.22215 1.22801 1.21944 1.22424 0.92451 0.85767 1.01819 1.21495 0.98120 0.75060 0.81950 1.92995 1.90814 1.37022 1.96579 1.92968 1.91224 1.81075 1.53077 0.89392 0.90327 0.91099 0.91206 0.90144 0.89061 0.89214 0.91705 0.91450 0.90292 0.91264 0.91110 0.94503 0.93645 0.92697 0.90417 0.87666 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 7.80 37.16 0.29 -1.08 16 2 C -0.13 -1.33 0.46 -155.66 -0.07 -1.41 16 3 C -0.16 -1.32 7.80 37.16 0.29 -1.03 16 4 C 0.53 6.90 6.35 -10.99 -0.07 6.83 16 5 O -0.54 -8.75 14.74 5.56 0.08 -8.67 16 6 N -0.60 -7.58 2.95 -172.42 -0.51 -8.09 16 7 C 0.12 1.64 6.29 -3.49 -0.02 1.62 16 8 C -0.13 -2.11 5.45 -26.98 -0.15 -2.25 16 9 C 0.17 3.05 2.57 -68.13 -0.18 2.87 16 10 H 0.02 0.42 7.91 -51.93 -0.41 0.01 16 11 C -0.13 -1.82 2.41 -89.51 -0.22 -2.03 16 12 H 0.09 1.28 7.41 -51.93 -0.38 0.90 16 13 C -0.12 -1.68 6.54 -25.14 -0.16 -1.84 16 14 C 0.11 2.11 4.89 -1.92 -0.01 2.10 16 15 N -0.60 -13.69 3.26 -163.26 -0.53 -14.22 16 16 C -0.33 -8.88 10.10 -15.06 -0.15 -9.03 16 17 H 0.08 2.29 7.40 -52.48 -0.39 1.90 16 18 C -0.02 -0.47 5.46 -17.43 -0.10 -0.57 16 19 N -0.92 -28.12 13.70 55.49 0.76 -27.36 16 20 Si 1.06 25.87 24.62 -169.99 -4.19 21.68 16 21 H -0.29 -6.74 6.56 56.52 0.37 -6.37 16 22 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.29 -6.76 6.39 56.52 0.36 -6.40 16 24 C 0.10 1.05 3.40 -3.72 -0.01 1.04 16 25 C 0.29 3.06 3.70 37.16 0.14 3.20 16 26 F -0.19 -2.55 15.71 2.25 0.04 -2.51 16 27 F -0.20 -2.09 16.70 2.25 0.04 -2.05 16 28 H 0.09 0.66 4.67 -51.93 -0.24 0.42 16 29 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 30 H 0.07 0.66 7.57 -51.93 -0.39 0.27 16 31 H 0.07 0.55 7.96 -51.93 -0.41 0.14 16 32 H 0.08 0.53 7.83 -51.93 -0.41 0.12 16 33 H 0.09 0.81 4.08 -51.93 -0.21 0.60 16 34 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 37 H 0.08 1.42 7.63 -51.93 -0.40 1.02 16 38 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.79 4.18 -51.93 -0.22 0.57 16 41 H 0.05 0.97 7.17 -51.92 -0.37 0.60 16 42 H 0.26 7.97 8.73 -40.82 -0.36 7.62 16 43 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 44 H 0.11 0.89 2.94 -51.93 -0.15 0.74 16 45 H 0.11 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -32.37 333.94 -6.21 -38.58 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.51 Total: -0.81 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.42 Total: -1.58 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.28 Total: -49.67 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.07 Total: -4.56 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -4.19 Total: 21.68 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.37 -6.21 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036815223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.189 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds