Wall clock time and date at job start Tue Mar 31 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 C 1.50701 * 109.47195 * 119.99670 * 2 1 3 5 5 O 1.21275 * 120.00597 * 235.68079 * 4 2 1 6 6 N 1.34781 * 119.99361 * 55.67809 * 4 2 1 7 7 C 1.47066 * 120.93596 * 5.33838 * 6 4 2 8 8 C 1.53102 * 107.54038 * 121.17014 * 7 6 4 9 9 C 1.50290 * 112.37685 * 52.61081 * 8 7 6 10 10 H 1.08997 * 105.74606 * 196.36527 * 9 8 7 11 11 C 1.52112 * 116.66790 * 314.14999 * 9 8 7 12 12 H 1.08993 * 111.20215 * 272.30434 * 11 9 8 13 13 C 1.55998 * 102.18648 * 153.96869 * 11 9 8 14 14 C 1.55074 * 101.17261 * 323.01076 * 13 11 9 15 15 N 1.46507 * 113.03446 * 80.79415 * 9 8 7 16 16 C 1.36937 * 125.97356 * 47.07363 * 15 9 8 17 17 H 1.07994 * 119.99897 * 359.95341 * 16 15 9 18 18 C 1.38814 * 119.99724 * 179.97438 * 16 15 9 19 19 N 1.31614 * 120.00415 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99556 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46940 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47009 * 119.99683 * 20 18 16 23 23 H 1.48499 * 109.46961 * 239.99893 * 20 18 16 24 24 C 1.46120 * 120.92850 * 185.62169 * 6 4 2 25 25 C 1.53001 * 109.47546 * 239.99968 * 2 1 3 26 26 F 1.39904 * 109.47140 * 54.02164 * 25 2 1 27 27 F 1.39902 * 109.47332 * 174.02379 * 25 2 1 28 28 H 1.09003 * 109.46543 * 55.23935 * 1 2 3 29 29 H 1.08997 * 109.47409 * 295.23641 * 1 2 3 30 30 H 1.09004 * 109.47027 * 175.23330 * 1 2 3 31 31 H 1.09000 * 109.47284 * 64.91109 * 3 2 1 32 32 H 1.08998 * 109.47381 * 184.90961 * 3 2 1 33 33 H 1.09003 * 109.47350 * 304.90995 * 3 2 1 34 34 H 1.08996 * 109.79300 * 240.75729 * 7 6 4 35 35 H 1.08993 * 109.79385 * 1.61710 * 7 6 4 36 36 H 1.08994 * 109.01087 * 291.80384 * 8 7 6 37 37 H 1.08997 * 108.82168 * 173.28593 * 8 7 6 38 38 H 1.09005 * 111.08325 * 80.98472 * 13 11 9 39 39 H 1.09000 * 111.08231 * 205.03331 * 13 11 9 40 40 H 1.09002 * 110.35694 * 155.67099 * 14 13 11 41 41 H 1.08995 * 110.35774 * 277.97873 * 14 13 11 42 42 H 0.96998 * 120.00037 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.04334 * 352.99111 * 24 6 4 44 44 H 1.08996 * 109.04343 * 111.86094 * 24 6 4 45 45 H 1.08999 * 109.46919 * 294.02216 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7928 -0.1463 1.9884 6 7 1.6364 -1.9725 1.4887 7 6 0.8093 -2.7171 0.5272 8 6 1.5785 -3.9829 0.1400 9 6 2.0201 -4.7735 1.3394 10 1 2.7856 -5.4592 0.9762 11 6 2.6571 -3.9899 2.4769 12 1 3.7314 -3.8823 2.3283 13 6 2.3547 -4.8956 3.7105 14 6 0.9370 -5.4171 3.3602 15 7 0.9562 -5.6130 1.8960 16 6 0.1251 -6.4358 1.1836 17 1 0.2241 -6.5054 0.1105 18 6 -0.8449 -7.1801 1.8409 19 7 -0.9656 -7.0955 3.1488 20 14 -1.9782 -8.3031 0.8692 21 1 -1.6395 -8.2192 -0.5743 22 1 -1.8091 -9.7021 1.3372 23 1 -3.3872 -7.8801 1.0720 24 6 2.0118 -2.6374 2.7345 25 6 2.0401 -0.7212 -1.2492 26 9 1.4650 -0.1459 -2.3874 27 9 3.4324 -0.6035 -1.3199 28 1 -0.3632 0.5860 -0.8443 29 1 -0.3634 0.4381 0.9295 30 1 -0.3633 -1.0242 -0.0854 31 1 1.7503 1.9303 0.9307 32 1 3.1264 1.4438 -0.0879 33 1 1.6066 1.9811 -0.8428 34 1 -0.1409 -2.9861 0.9884 35 1 0.6312 -2.1058 -0.3575 36 1 2.4574 -3.7009 -0.4398 37 1 0.9360 -4.6095 -0.4786 38 1 3.0687 -5.7165 3.7786 39 1 2.3416 -4.3124 4.6313 40 1 0.7449 -6.3629 3.8668 41 1 0.1831 -4.6791 3.6342 42 1 -1.6431 -7.6158 3.6080 43 1 2.7151 -2.0055 3.2770 44 1 1.1198 -2.7794 3.3446 45 1 1.7668 -1.7751 -1.1973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036815224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:43 Heat of formation + Delta-G solvation = -93.777527 kcal Electronic energy + Delta-G solvation = -29261.404824 eV Core-core repulsion = 25143.907737 eV Total energy + Delta-G solvation = -4117.497087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.18417 -47.11403 -40.71120 -38.55380 -35.78517 -35.01665 -32.83410 -31.88168 -29.49089 -28.32012 -27.23591 -26.63056 -25.69763 -24.20613 -22.79223 -21.95114 -20.24214 -19.63176 -18.40144 -17.75235 -17.51123 -17.19534 -16.55909 -16.14416 -15.65631 -15.28280 -14.67207 -14.55541 -14.21512 -14.02779 -13.83011 -13.60276 -13.48794 -13.35307 -13.03679 -12.77853 -12.67494 -12.46412 -12.43658 -12.26326 -11.97474 -11.81626 -11.59544 -11.27503 -11.23184 -11.12303 -10.88318 -10.71081 -10.52750 -10.24759 -10.15976 -10.03174 -9.73727 -9.69334 -9.55178 -8.72026 -8.42267 -6.90095 -5.75266 -3.15108 2.44019 2.95982 3.33079 3.38920 3.41493 3.55808 3.92896 4.02793 4.24143 4.40030 4.66325 4.77684 4.87146 4.92354 5.15480 5.17781 5.27439 5.35298 5.36357 5.46133 5.48656 5.54878 5.58839 5.62224 5.71550 5.82819 5.87112 6.01689 6.05746 6.11067 6.18500 6.18682 6.33949 6.47668 6.59615 6.62213 6.79853 6.87637 7.42767 7.46700 7.55104 7.77678 8.12097 8.25774 9.12533 9.74695 10.40993 11.30269 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017948 B = 0.004513 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.725071 B = 6202.219439 C = 6975.543281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.132 4.132 3 C -0.130 4.130 4 C 0.526 3.474 5 O -0.533 6.533 6 N -0.597 5.597 7 C 0.091 3.909 8 C -0.142 4.142 9 C 0.173 3.827 10 H 0.015 0.985 11 C -0.104 4.104 12 H 0.073 0.927 13 C -0.142 4.142 14 C 0.155 3.845 15 N -0.593 5.593 16 C -0.222 4.222 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.123 3.877 25 C 0.258 3.742 26 F -0.198 7.198 27 F -0.197 7.197 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.013 0.987 42 H 0.252 0.748 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 12.553 -5.669 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.136 4.136 3 C -0.187 4.187 4 C 0.313 3.687 5 O -0.409 6.409 6 N -0.329 5.329 7 C -0.030 4.030 8 C -0.182 4.182 9 C 0.065 3.935 10 H 0.032 0.968 11 C -0.124 4.124 12 H 0.091 0.909 13 C -0.181 4.181 14 C 0.031 3.969 15 N -0.318 5.318 16 C -0.351 4.351 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.567 5.567 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.001 3.999 25 C 0.204 3.796 26 F -0.179 7.179 27 F -0.178 7.178 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.031 0.969 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.898 12.695 -5.248 14.280 hybrid contribution -0.619 -0.620 -0.658 1.096 sum 3.279 12.075 -5.906 13.836 Atomic orbital electron populations 1.22216 0.90180 1.04758 1.04341 1.21904 0.99741 0.99089 0.92871 1.21656 1.02463 0.91409 1.03186 1.19888 0.80714 0.81507 0.86631 1.90675 1.34777 1.65909 1.49563 1.47939 1.51336 1.12743 1.20893 1.22375 0.95550 0.92985 0.92123 1.21795 0.99755 0.96401 1.00252 1.19507 0.91629 0.91260 0.91136 0.96785 1.21890 0.98874 0.94025 0.97644 0.90881 1.23305 1.01264 0.98061 0.95469 1.21925 0.89240 1.00931 0.84834 1.44544 1.37737 1.46769 1.02713 1.19011 1.08988 1.16198 0.90868 0.90404 1.24756 0.99340 1.00423 0.95826 1.69839 1.36149 1.44381 1.06339 0.86063 0.80503 0.80462 0.78832 1.20537 1.21765 1.21802 1.21280 1.00663 0.93094 0.84819 1.22448 0.74970 0.99347 0.82822 1.92978 1.84265 1.87333 1.53332 1.93002 1.30873 1.97353 1.96559 0.90329 0.90507 0.89870 0.90706 0.91048 0.91350 0.89230 0.89757 0.93020 0.89629 0.91815 0.92010 0.88166 0.96881 0.93750 0.89705 0.90962 0.85589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 7.85 37.16 0.29 -1.25 16 2 C -0.13 -1.57 0.47 -155.66 -0.07 -1.64 16 3 C -0.13 -1.47 7.57 37.16 0.28 -1.18 16 4 C 0.53 7.85 6.35 -10.98 -0.07 7.78 16 5 O -0.53 -9.50 15.39 5.56 0.09 -9.41 16 6 N -0.60 -8.88 2.92 -174.05 -0.51 -9.39 16 7 C 0.09 1.28 4.27 -3.68 -0.02 1.26 16 8 C -0.14 -2.25 5.35 -28.03 -0.15 -2.40 16 9 C 0.17 3.25 2.70 -69.73 -0.19 3.06 16 10 H 0.01 0.29 8.09 -51.93 -0.42 -0.13 16 11 C -0.10 -1.76 3.45 -89.95 -0.31 -2.07 16 12 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.14 -2.52 6.38 -24.03 -0.15 -2.68 16 14 C 0.16 3.47 5.50 -2.27 -0.01 3.46 16 15 N -0.59 -13.59 3.29 -165.45 -0.54 -14.13 16 16 C -0.22 -5.62 9.62 -15.06 -0.14 -5.76 16 17 H 0.08 1.90 7.09 -52.49 -0.37 1.52 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -25.32 10.16 55.49 0.56 -24.75 16 20 Si 0.91 20.87 29.55 -169.99 -5.02 15.85 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.12 1.97 5.64 -4.73 -0.03 1.95 16 25 C 0.26 3.06 3.95 37.16 0.15 3.21 16 26 F -0.20 -2.30 16.48 2.25 0.04 -2.27 16 27 F -0.20 -2.74 16.34 2.25 0.04 -2.71 16 28 H 0.08 0.65 7.82 -51.93 -0.41 0.25 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.80 4.76 -51.93 -0.25 0.55 16 31 H 0.07 0.84 8.02 -51.93 -0.42 0.42 16 32 H 0.07 0.89 7.51 -51.93 -0.39 0.50 16 33 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.08 0.95 2.53 -51.93 -0.13 0.82 16 36 H 0.05 0.73 7.66 -51.93 -0.40 0.34 16 37 H 0.09 1.43 6.82 -51.93 -0.35 1.08 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 0.97 7.94 -51.93 -0.41 0.56 16 40 H 0.10 2.58 6.04 -51.93 -0.31 2.27 16 41 H 0.01 0.31 7.44 -51.93 -0.39 -0.07 16 42 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.08 1.36 6.97 -51.92 -0.36 1.00 16 44 H 0.07 1.22 6.80 -51.93 -0.35 0.86 16 45 H 0.13 1.39 4.14 -51.93 -0.22 1.18 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -29.07 338.64 -7.19 -36.26 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.42 Total: 2.00 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -0.52 Total: 3.45 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.49 Total: -48.28 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.07 Total: -4.97 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.07 -7.19 -36.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036815224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.518 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds