Wall clock time and date at job start Tue Mar 31 2020 11:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47315 * 2 1 4 4 C 1.50701 * 109.47207 * 120.00397 * 2 1 3 5 5 O 1.21285 * 119.99730 * 249.47750 * 4 2 1 6 6 N 1.34777 * 120.00384 * 69.46867 * 4 2 1 7 7 C 1.46592 * 119.68278 * 354.54789 * 6 4 2 8 8 C 1.53539 * 110.81408 * 227.73575 * 7 6 4 9 9 C 1.51518 * 107.42874 * 309.21777 * 8 7 6 10 10 H 1.08994 * 109.28660 * 306.14472 * 9 8 7 11 11 C 1.55360 * 107.78309 * 64.70418 * 9 8 7 12 12 H 1.09001 * 111.51331 * 50.39517 * 11 9 8 13 13 C 1.53747 * 101.00230 * 168.71935 * 11 9 8 14 14 C 1.56325 * 101.36401 * 321.88602 * 13 11 9 15 15 N 1.45467 * 117.33994 * 181.73884 * 9 8 7 16 16 C 1.36931 * 126.40722 * 30.61953 * 15 9 8 17 17 H 1.08003 * 119.99846 * 0.02562 * 16 15 9 18 18 C 1.38813 * 120.00004 * 179.97438 * 16 15 9 19 19 N 1.31611 * 120.00209 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99785 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46896 * 90.00477 * 20 18 16 22 22 H 1.48496 * 109.46901 * 210.00322 * 20 18 16 23 23 H 1.48503 * 109.47154 * 330.00138 * 20 18 16 24 24 C 1.47720 * 119.68736 * 174.81795 * 6 4 2 25 25 C 1.53002 * 109.47359 * 240.00199 * 2 1 3 26 26 F 1.39897 * 109.47304 * 66.21775 * 25 2 1 27 27 F 1.39900 * 109.47194 * 186.22689 * 25 2 1 28 28 H 1.09004 * 109.47249 * 296.76392 * 1 2 3 29 29 H 1.09000 * 109.47236 * 56.76268 * 1 2 3 30 30 H 1.09003 * 109.47361 * 176.76005 * 1 2 3 31 31 H 1.09001 * 109.46979 * 184.84612 * 3 2 1 32 32 H 1.08994 * 109.47055 * 304.84556 * 3 2 1 33 33 H 1.09001 * 109.46746 * 64.84959 * 3 2 1 34 34 H 1.08998 * 109.25778 * 348.10690 * 7 6 4 35 35 H 1.09001 * 109.25441 * 107.54070 * 7 6 4 36 36 H 1.09004 * 109.95997 * 189.66079 * 8 7 6 37 37 H 1.08992 * 109.77629 * 68.67340 * 8 7 6 38 38 H 1.09001 * 110.95416 * 79.50075 * 13 11 9 39 39 H 1.09002 * 110.95633 * 203.22519 * 13 11 9 40 40 H 1.09003 * 109.16884 * 262.21284 * 14 13 11 41 41 H 1.09006 * 110.48835 * 141.23608 * 14 13 11 42 42 H 0.97003 * 120.00462 * 179.97438 * 19 18 16 43 43 H 1.09000 * 110.07077 * 247.15024 * 24 6 4 44 44 H 1.09002 * 110.06866 * 8.72823 * 24 6 4 45 45 H 1.09001 * 109.46921 * 306.21986 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.5816 -0.0831 2.1111 6 7 1.8711 -2.0430 1.3523 7 6 1.1017 -2.7765 0.3427 8 6 0.0835 -3.7139 1.0075 9 6 0.8286 -4.5333 2.0415 10 1 1.6800 -5.0222 1.5680 11 6 1.3431 -3.5598 3.1375 12 1 0.5464 -2.9115 3.5023 13 6 1.7966 -4.5515 4.2214 14 6 0.6856 -5.6467 4.1211 15 7 0.0675 -5.5292 2.7797 16 6 -1.0175 -6.2272 2.3209 17 1 -1.3836 -6.0587 1.3189 18 6 -1.6462 -7.1521 3.1432 19 7 -1.1997 -7.3577 4.3641 20 14 -3.1269 -8.1037 2.5175 21 1 -2.6705 -9.3603 1.8711 22 1 -4.0228 -8.4298 3.6559 23 1 -3.8643 -7.2775 1.5281 24 6 2.4661 -2.7496 2.5050 25 6 2.0400 -0.7212 -1.2493 26 9 1.6941 0.0156 -2.3870 27 9 3.4317 -0.8464 -1.1799 28 1 -0.3634 0.4628 0.9176 29 1 -0.3634 0.5633 -0.8595 30 1 -0.3634 -1.0260 -0.0581 31 1 3.1266 1.4437 -0.0868 32 1 1.6076 1.9808 -0.8434 33 1 1.7493 1.9306 0.9303 34 1 0.5733 -2.0659 -0.2928 35 1 1.7832 -3.3674 -0.2692 36 1 -0.3585 -4.3731 0.2603 37 1 -0.6968 -3.1269 1.4917 38 1 2.7740 -4.9705 3.9821 39 1 1.8068 -4.0782 5.2032 40 1 -0.0638 -5.4680 4.8922 41 1 1.1167 -6.6401 4.2457 42 1 -1.6393 -8.0038 4.9389 43 1 3.2617 -3.4135 2.1667 44 1 2.8583 -2.0296 3.2232 45 1 1.5886 -1.7117 -1.3067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036815225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:47 Heat of formation + Delta-G solvation = -92.089410 kcal Electronic energy + Delta-G solvation = -28843.147868 eV Core-core repulsion = 24725.723984 eV Total energy + Delta-G solvation = -4117.423884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.26525 -47.19553 -40.79771 -38.52475 -35.91811 -35.22663 -32.68745 -31.72600 -29.74509 -28.57475 -27.44981 -26.58862 -25.31551 -24.09709 -22.53746 -21.78114 -20.24014 -19.80222 -19.16547 -17.93564 -17.34059 -17.33264 -16.49211 -16.06388 -15.60840 -15.19207 -15.05575 -14.45589 -14.21747 -14.15761 -13.84500 -13.75820 -13.54980 -13.37773 -13.14803 -12.94296 -12.70715 -12.56361 -12.49725 -12.30840 -12.12965 -11.74724 -11.64178 -11.52802 -11.38631 -11.03043 -10.86276 -10.81385 -10.53769 -10.21790 -10.12518 -9.95262 -9.74060 -9.68454 -9.54099 -8.67964 -8.65413 -6.89937 -5.76991 -3.10719 2.38770 2.81247 3.35468 3.40108 3.42688 3.43023 3.83212 3.90514 4.16869 4.43525 4.55415 4.64094 4.73338 4.82081 4.96677 5.09645 5.22608 5.25055 5.28925 5.42253 5.47901 5.50043 5.52829 5.54895 5.71500 5.78128 5.80243 5.92713 5.97838 6.03676 6.08115 6.14278 6.24951 6.38059 6.52909 6.55892 6.72213 6.98317 7.29219 7.49638 7.56119 7.75740 8.01497 8.18522 9.13363 9.77070 10.44945 11.35317 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020671 B = 0.003875 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.208523 B = 7224.822967 C = 7967.161416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.134 4.134 3 C -0.130 4.130 4 C 0.528 3.472 5 O -0.530 6.530 6 N -0.602 5.602 7 C 0.081 3.919 8 C -0.129 4.129 9 C 0.167 3.833 10 H 0.021 0.979 11 C -0.123 4.123 12 H 0.079 0.921 13 C -0.136 4.136 14 C 0.177 3.823 15 N -0.594 5.594 16 C -0.228 4.228 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.920 5.920 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.126 3.874 25 C 0.252 3.748 26 F -0.199 7.199 27 F -0.198 7.198 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.040 0.960 42 H 0.253 0.747 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 13.470 -9.725 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C -0.188 4.188 4 C 0.314 3.686 5 O -0.406 6.406 6 N -0.335 5.335 7 C -0.042 4.042 8 C -0.168 4.168 9 C 0.059 3.941 10 H 0.038 0.962 11 C -0.144 4.144 12 H 0.097 0.903 13 C -0.175 4.175 14 C 0.053 3.947 15 N -0.319 5.319 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.567 5.567 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.004 3.996 25 C 0.199 3.801 26 F -0.180 7.180 27 F -0.179 7.179 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.457 13.609 -9.188 17.303 hybrid contribution -0.763 -0.632 -0.399 1.068 sum 4.694 12.977 -9.587 16.803 Atomic orbital electron populations 1.22135 0.90047 1.04281 1.04682 1.21936 0.99795 0.99236 0.92848 1.21661 1.02074 0.91489 1.03548 1.19928 0.79149 0.82065 0.87447 1.90686 1.43112 1.65313 1.41453 1.48261 1.52530 1.06586 1.26115 1.22455 0.94808 0.96019 0.90889 1.21818 0.97433 0.97653 0.99878 1.20629 0.93349 0.88798 0.91332 0.96187 1.22638 0.97540 0.96649 0.97554 0.90258 1.22875 0.99855 0.97524 0.97283 1.21700 0.91574 0.93978 0.87444 1.44184 1.33139 1.43138 1.11410 1.18972 1.03606 1.15304 0.97748 0.90368 1.24792 0.99546 0.99744 0.96208 1.69933 1.42036 1.37579 1.07181 0.86160 0.82296 0.80018 0.77506 1.21607 1.21698 1.20715 1.21692 0.95438 0.95469 0.86957 1.22688 0.77713 0.96679 0.83045 1.92976 1.91784 1.80113 1.53113 1.93008 1.31663 1.96755 1.96449 0.90199 0.90189 0.90050 0.91477 0.91121 0.90345 0.88916 0.91176 0.90144 0.91081 0.92327 0.91891 0.92856 0.94169 0.93702 0.91052 0.89061 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.12 37.16 0.30 -1.04 16 2 C -0.13 -1.44 0.47 -155.66 -0.07 -1.51 16 3 C -0.13 -1.36 7.62 37.16 0.28 -1.08 16 4 C 0.53 7.33 6.05 -10.98 -0.07 7.26 16 5 O -0.53 -9.02 15.24 5.55 0.08 -8.93 16 6 N -0.60 -8.12 2.99 -172.75 -0.52 -8.64 16 7 C 0.08 0.94 4.06 -3.71 -0.02 0.92 16 8 C -0.13 -1.95 5.46 -27.20 -0.15 -2.09 16 9 C 0.17 3.12 2.58 -67.98 -0.18 2.95 16 10 H 0.02 0.40 7.95 -51.93 -0.41 -0.02 16 11 C -0.12 -2.09 2.81 -89.37 -0.25 -2.34 16 12 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 13 C -0.14 -2.44 6.64 -24.56 -0.16 -2.60 16 14 C 0.18 4.13 5.47 -1.34 -0.01 4.12 16 15 N -0.59 -14.17 3.35 -162.44 -0.54 -14.72 16 16 C -0.23 -5.96 9.88 -15.06 -0.15 -6.11 16 17 H 0.08 1.94 7.21 -52.48 -0.38 1.56 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -26.26 10.43 55.49 0.58 -25.68 16 20 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C 0.13 1.84 5.97 -3.76 -0.02 1.82 16 25 C 0.25 2.58 3.79 37.16 0.14 2.72 16 26 F -0.20 -2.06 16.46 2.25 0.04 -2.02 16 27 F -0.20 -2.48 16.53 2.25 0.04 -2.44 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.56 8.05 -51.93 -0.42 0.15 16 30 H 0.08 0.67 5.19 -51.93 -0.27 0.40 16 31 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 32 H 0.07 0.61 7.82 -51.93 -0.41 0.21 16 33 H 0.08 0.85 7.83 -51.93 -0.41 0.44 16 34 H 0.09 0.85 2.28 -51.93 -0.12 0.73 16 35 H 0.07 0.74 7.84 -51.93 -0.41 0.34 16 36 H 0.08 1.21 7.62 -51.93 -0.40 0.82 16 37 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 38 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.39 7.21 -51.93 -0.37 1.02 16 41 H 0.04 1.03 7.76 -51.93 -0.40 0.63 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 44 H 0.09 1.39 6.98 -51.93 -0.36 1.03 16 45 H 0.13 1.08 4.26 -51.93 -0.22 0.86 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -30.85 343.17 -7.26 -38.11 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.65 Total: 0.09 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.44 Total: 2.77 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.48 Total: -49.04 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.07 Total: -4.46 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.85 -7.26 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036815225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.979 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds