Wall clock time and date at job start Tue Mar 31 2020 11:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46922 * 2 1 4 4 H 1.08996 * 109.52430 * 305.07910 * 3 2 1 5 5 C 1.53192 * 109.49887 * 65.16028 * 3 2 1 6 6 N 1.46917 * 108.77326 * 174.58281 * 5 3 2 7 7 C 1.34785 * 120.62868 * 126.41573 * 6 5 3 8 8 O 1.21283 * 119.99858 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00126 * 180.02562 * 7 6 5 10 10 C 1.53787 * 113.61167 * 277.49490 * 9 7 6 11 11 C 1.53785 * 87.08104 * 220.01641 * 10 9 7 12 12 F 1.39896 * 113.61726 * 270.88450 * 11 10 9 13 13 F 1.39897 * 113.68714 * 139.99249 * 11 10 9 14 14 C 1.53774 * 113.61587 * 180.02562 * 9 7 6 15 15 C 1.46925 * 118.74351 * 306.39369 * 6 5 3 16 16 C 1.53188 * 108.77613 * 53.60844 * 15 6 5 17 17 C 1.53042 * 109.49150 * 184.99699 * 3 2 1 18 18 H 1.08999 * 109.46023 * 58.67873 * 17 3 2 19 19 N 1.46492 * 109.46658 * 298.70154 * 17 3 2 20 20 C 1.36935 * 120.00376 * 155.00230 * 19 17 3 21 21 H 1.08003 * 119.99724 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00063 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99887 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00212 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 89.99941 * 24 22 20 26 26 H 1.48503 * 109.47261 * 330.00122 * 24 22 20 27 27 H 1.48500 * 109.47454 * 210.00115 * 24 22 20 28 28 H 1.08999 * 109.47029 * 300.00177 * 1 2 3 29 29 H 1.08996 * 109.47063 * 60.00219 * 1 2 3 30 30 H 1.09002 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47029 * 239.99823 * 2 1 3 32 32 H 1.09005 * 109.46944 * 119.99531 * 2 1 3 33 33 H 1.08998 * 109.58957 * 294.37353 * 5 3 2 34 34 H 1.09003 * 109.58303 * 54.79735 * 5 3 2 35 35 H 1.08999 * 112.85241 * 48.79450 * 9 7 6 36 36 H 1.08992 * 113.61692 * 334.56999 * 10 9 7 37 37 H 1.09004 * 113.61014 * 105.47058 * 10 9 7 38 38 H 1.09005 * 113.61234 * 254.52627 * 14 9 7 39 39 H 1.08999 * 113.61476 * 25.34441 * 14 9 7 40 40 H 1.08999 * 109.58665 * 173.39914 * 15 6 5 41 41 H 1.09007 * 109.58384 * 293.67829 * 15 6 5 42 42 H 1.09002 * 109.49733 * 185.41830 * 16 15 6 43 43 H 1.08993 * 109.50070 * 65.31666 * 16 15 6 44 44 H 0.97009 * 119.99477 * 335.00815 * 19 17 3 45 45 H 0.97006 * 119.99732 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4857 4.5565 1.5681 8 8 0.2898 4.4405 1.7333 9 6 2.1226 5.9217 1.6059 10 6 2.7504 6.2711 2.9656 11 6 2.1939 7.6912 2.7690 12 9 3.0684 8.5469 2.0907 13 9 1.6762 8.2588 3.9382 14 6 1.1227 7.0610 1.8640 15 6 3.6952 3.5888 1.1498 16 6 4.0737 2.8882 -0.1589 17 6 3.5653 1.4450 -0.1257 18 1 3.8546 0.9370 -1.0456 19 7 4.1508 0.7475 1.0218 20 6 5.3886 0.1718 0.9145 21 1 5.9334 0.2323 -0.0160 22 6 5.9431 -0.4895 2.0017 23 7 7.1331 -1.0424 1.8987 24 14 5.0011 -0.5935 3.6115 25 1 4.1582 -1.8161 3.6137 26 1 4.1357 0.6046 3.7569 27 1 5.9604 -0.6515 4.7436 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 0.5532 2.2162 1.3585 34 1 1.9965 1.5377 2.1549 35 1 2.7837 6.1040 0.7586 36 1 2.3013 5.7383 3.8037 37 1 3.8395 6.2255 2.9683 38 1 0.8972 7.6534 0.9771 39 1 0.2281 6.7438 2.3998 40 1 3.9669 4.6428 1.0919 41 1 4.2209 3.1212 1.9824 42 1 5.1578 2.8894 -0.2719 43 1 3.6193 3.4147 -0.9981 44 1 3.6615 0.6935 1.8578 45 1 7.5204 -1.5048 2.6584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037828837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:05 Heat of formation + Delta-G solvation = -105.385154 kcal Electronic energy + Delta-G solvation = -28181.158229 eV Core-core repulsion = 24063.157798 eV Total energy + Delta-G solvation = -4118.000431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.06753 -47.39300 -40.62725 -38.61128 -36.84828 -34.65160 -33.91609 -31.83494 -29.93265 -29.15290 -26.82498 -26.57944 -24.63655 -23.93262 -23.19092 -21.19952 -20.88269 -19.50190 -18.62762 -18.05109 -17.69127 -17.01989 -16.83542 -16.42763 -15.78309 -15.45492 -14.82554 -14.58476 -14.26748 -14.25420 -14.15816 -13.78751 -13.66335 -13.52846 -13.34497 -13.27167 -12.93173 -12.65442 -12.51501 -12.16398 -12.01311 -11.79488 -11.72236 -11.59628 -11.33930 -11.13705 -11.02265 -10.86472 -10.75368 -10.45916 -10.43447 -10.27598 -9.88357 -9.76155 -9.61737 -9.01963 -8.47424 -7.35017 -5.84851 -3.20480 2.47839 2.94291 3.18282 3.27790 3.31501 3.38880 3.47580 3.93137 4.03316 4.09855 4.50421 4.59552 4.91055 4.96411 5.03344 5.11041 5.14139 5.15329 5.24456 5.27580 5.35537 5.39567 5.47254 5.50389 5.56741 5.59009 5.70774 5.79336 5.81815 5.96088 5.98743 6.12182 6.20401 6.25161 6.37376 6.43332 6.48728 6.59820 6.69435 6.80921 7.46125 7.91232 8.12237 8.34183 9.12149 9.84720 10.04266 11.33502 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.004270 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.152956 B = 6556.131084 C = 7549.160667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.116 3.884 6 N -0.598 5.598 7 C 0.527 3.473 8 O -0.547 6.547 9 C -0.132 4.132 10 C -0.149 4.149 11 C 0.255 3.745 12 F -0.178 7.178 13 F -0.189 7.189 14 C -0.141 4.141 15 C 0.110 3.890 16 C -0.151 4.151 17 C 0.184 3.816 18 H 0.061 0.939 19 N -0.743 5.743 20 C -0.242 4.242 21 H 0.091 0.909 22 C 0.008 3.992 23 N -0.932 5.932 24 Si 0.878 3.122 25 H -0.284 1.284 26 H -0.279 1.279 27 H -0.291 1.291 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.395 13.871 -2.018 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.006 4.006 6 N -0.330 5.330 7 C 0.314 3.686 8 O -0.426 6.426 9 C -0.153 4.153 10 C -0.188 4.188 11 C 0.219 3.781 12 F -0.159 7.159 13 F -0.169 7.169 14 C -0.179 4.179 15 C -0.012 4.012 16 C -0.191 4.191 17 C 0.074 3.926 18 H 0.079 0.921 19 N -0.387 5.387 20 C -0.372 4.372 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.580 5.580 24 Si 0.708 3.292 25 H -0.210 1.210 26 H -0.206 1.206 27 H -0.218 1.218 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.143 0.857 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.194 0.806 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.768 13.734 -1.990 18.195 hybrid contribution -0.216 0.024 1.275 1.293 sum -11.984 13.758 -0.715 18.260 Atomic orbital electron populations 1.21861 0.96585 1.01231 1.01475 1.21435 0.94512 0.95638 1.03348 1.21806 0.97455 0.96259 0.97124 0.90938 1.21721 0.99116 0.81653 0.98124 1.48141 1.08915 1.06492 1.69411 1.19965 0.86649 0.85369 0.76571 1.90673 1.14742 1.86414 1.50722 1.22535 0.99418 0.93531 0.99859 1.24051 1.03971 0.92439 0.98315 1.21982 0.89850 0.85493 0.80781 1.93027 1.70288 1.73048 1.79525 1.93019 1.86872 1.87461 1.49575 1.23981 0.98191 0.95052 1.00696 1.21812 0.78828 1.00459 1.00120 1.22512 1.02429 0.98849 0.95358 1.20193 0.89378 0.90685 0.92312 0.92105 1.42839 1.19750 1.65817 1.10298 1.19047 0.92129 1.26762 0.99231 0.89150 1.24630 0.96427 1.00241 0.97482 1.69690 1.16245 1.41109 1.30936 0.86680 0.79413 0.77809 0.85270 1.21028 1.20570 1.21754 0.92875 0.93095 0.93000 0.91434 0.91162 0.89179 0.91517 0.85482 0.86492 0.87727 0.88352 0.85662 0.90806 0.89996 0.90080 0.92841 0.80615 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.68 37.16 0.36 -1.49 16 2 C -0.11 -1.58 5.19 -26.73 -0.14 -1.72 16 3 C -0.11 -1.53 2.14 -90.50 -0.19 -1.72 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 5 C 0.12 1.71 5.03 -3.72 -0.02 1.69 16 6 N -0.60 -8.28 2.97 -172.77 -0.51 -8.79 16 7 C 0.53 7.06 7.22 -10.98 -0.08 6.98 16 8 O -0.55 -8.85 15.31 5.56 0.09 -8.77 16 9 C -0.13 -1.32 2.72 -90.96 -0.25 -1.57 16 10 C -0.15 -1.40 7.28 -25.91 -0.19 -1.59 16 11 C 0.26 2.56 3.27 -25.94 -0.08 2.48 16 12 F -0.18 -1.92 17.38 2.25 0.04 -1.88 16 13 F -0.19 -2.17 17.41 2.25 0.04 -2.13 16 14 C -0.14 -1.33 7.19 -25.94 -0.19 -1.52 16 15 C 0.11 1.48 6.08 -3.71 -0.02 1.46 16 16 C -0.15 -2.18 5.78 -26.61 -0.15 -2.34 16 17 C 0.18 3.07 2.53 -67.89 -0.17 2.90 16 18 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 19 N -0.74 -15.38 3.53 -53.39 -0.19 -15.57 16 20 C -0.24 -6.19 10.41 -15.06 -0.16 -6.35 16 21 H 0.09 2.51 8.06 -52.48 -0.42 2.08 16 22 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 23 N -0.93 -27.92 13.97 55.49 0.78 -27.15 16 24 Si 0.88 20.99 27.73 -169.99 -4.71 16.28 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.24 6.52 56.52 0.37 -5.88 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.13 7.70 -51.93 -0.40 0.73 16 33 H 0.09 1.34 5.73 -51.93 -0.30 1.04 16 34 H 0.07 1.08 6.64 -51.93 -0.34 0.74 16 35 H 0.13 1.07 7.21 -51.93 -0.37 0.70 16 36 H 0.12 1.13 8.09 -51.93 -0.42 0.71 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.13 1.29 7.43 -51.93 -0.39 0.90 16 40 H 0.07 0.78 5.69 -51.93 -0.30 0.49 16 41 H 0.08 1.30 7.75 -51.93 -0.40 0.90 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.36 7.52 3.80 -40.82 -0.16 7.36 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -30.00 355.37 -7.32 -37.32 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.82 Total: 7.99 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.38 Total: -2.65 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.07 Total: -51.50 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.08 Total: -4.02 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.71 Total: 16.28 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.00 -7.32 -37.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037828837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.069 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds