Wall clock time and date at job start Tue Mar 31 2020 11:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46922 * 2 1 4 4 H 1.08996 * 109.52430 * 305.07910 * 3 2 1 5 5 C 1.53192 * 109.49887 * 65.16028 * 3 2 1 6 6 N 1.46917 * 108.77326 * 174.58281 * 5 3 2 7 7 C 1.34785 * 120.62868 * 126.41573 * 6 5 3 8 8 O 1.21283 * 119.99858 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00126 * 180.02562 * 7 6 5 10 10 C 1.53787 * 113.61167 * 277.49490 * 9 7 6 11 11 C 1.53785 * 87.08104 * 220.01641 * 10 9 7 12 12 F 1.39896 * 113.61726 * 270.88450 * 11 10 9 13 13 F 1.39897 * 113.68714 * 139.99249 * 11 10 9 14 14 C 1.53774 * 113.61587 * 180.02562 * 9 7 6 15 15 C 1.46925 * 118.74351 * 306.39369 * 6 5 3 16 16 C 1.53188 * 108.77613 * 53.60844 * 15 6 5 17 17 C 1.53042 * 109.49150 * 184.99699 * 3 2 1 18 18 H 1.08999 * 109.46023 * 58.67873 * 17 3 2 19 19 N 1.46492 * 109.46658 * 298.70154 * 17 3 2 20 20 C 1.36935 * 120.00376 * 155.00230 * 19 17 3 21 21 H 1.08003 * 119.99724 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00063 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99887 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00212 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 89.99941 * 24 22 20 26 26 H 1.48503 * 109.47261 * 330.00122 * 24 22 20 27 27 H 1.48500 * 109.47454 * 210.00115 * 24 22 20 28 28 H 1.08999 * 109.47029 * 300.00177 * 1 2 3 29 29 H 1.08996 * 109.47063 * 60.00219 * 1 2 3 30 30 H 1.09002 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47029 * 239.99823 * 2 1 3 32 32 H 1.09005 * 109.46944 * 119.99531 * 2 1 3 33 33 H 1.08998 * 109.58957 * 294.37353 * 5 3 2 34 34 H 1.09003 * 109.58303 * 54.79735 * 5 3 2 35 35 H 1.08999 * 112.85241 * 48.79450 * 9 7 6 36 36 H 1.08992 * 113.61692 * 334.56999 * 10 9 7 37 37 H 1.09004 * 113.61014 * 105.47058 * 10 9 7 38 38 H 1.09005 * 113.61234 * 254.52627 * 14 9 7 39 39 H 1.08999 * 113.61476 * 25.34441 * 14 9 7 40 40 H 1.08999 * 109.58665 * 173.39914 * 15 6 5 41 41 H 1.09007 * 109.58384 * 293.67829 * 15 6 5 42 42 H 1.09002 * 109.49733 * 185.41830 * 16 15 6 43 43 H 1.08993 * 109.50070 * 65.31666 * 16 15 6 44 44 H 0.97009 * 119.99477 * 335.00815 * 19 17 3 45 45 H 0.97006 * 119.99732 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4643 1.3506 7 6 1.4857 4.5565 1.5681 8 8 0.2898 4.4405 1.7333 9 6 2.1226 5.9217 1.6059 10 6 2.7504 6.2711 2.9656 11 6 2.1939 7.6912 2.7690 12 9 3.0684 8.5469 2.0907 13 9 1.6762 8.2588 3.9382 14 6 1.1227 7.0610 1.8640 15 6 3.6952 3.5888 1.1498 16 6 4.0737 2.8882 -0.1589 17 6 3.5653 1.4450 -0.1257 18 1 3.8546 0.9370 -1.0456 19 7 4.1508 0.7475 1.0218 20 6 5.3886 0.1718 0.9145 21 1 5.9334 0.2323 -0.0160 22 6 5.9431 -0.4895 2.0017 23 7 7.1331 -1.0424 1.8987 24 14 5.0011 -0.5935 3.6115 25 1 4.1582 -1.8161 3.6137 26 1 4.1357 0.6046 3.7569 27 1 5.9604 -0.6515 4.7436 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 0.5532 2.2162 1.3585 34 1 1.9965 1.5377 2.1549 35 1 2.7837 6.1040 0.7586 36 1 2.3013 5.7383 3.8037 37 1 3.8395 6.2255 2.9683 38 1 0.8972 7.6534 0.9771 39 1 0.2281 6.7438 2.3998 40 1 3.9669 4.6428 1.0919 41 1 4.2209 3.1212 1.9824 42 1 5.1578 2.8894 -0.2719 43 1 3.6193 3.4147 -0.9981 44 1 3.6615 0.6935 1.8578 45 1 7.5204 -1.5048 2.6584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037828837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:04 Heat of formation + Delta-G solvation = -122.089542 kcal Electronic energy + Delta-G solvation = -28181.882585 eV Core-core repulsion = 24063.157798 eV Total energy + Delta-G solvation = -4118.724788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.87473 -48.21352 -41.69638 -39.75733 -37.81158 -35.97506 -35.36632 -33.55745 -31.46164 -30.34198 -27.87169 -27.30673 -25.86695 -25.02843 -24.92892 -22.25384 -21.92860 -20.52314 -19.87627 -19.75924 -18.81009 -17.95794 -17.66294 -17.27162 -16.85370 -16.69982 -16.26488 -16.06608 -15.51066 -15.22241 -15.08256 -14.99707 -14.91670 -14.59733 -14.49841 -14.41182 -14.23126 -13.80668 -13.70769 -13.26895 -13.10526 -12.97685 -12.91385 -12.68212 -12.50986 -12.48491 -12.44623 -12.10580 -12.02243 -11.85731 -11.60009 -11.52376 -11.48875 -11.14848 -10.96411 -10.76805 -9.66471 -9.22032 -7.97351 -5.27870 1.35802 1.38475 1.45297 1.46275 1.90542 2.40426 2.49660 2.72086 3.15419 3.23216 3.27540 3.35378 3.62485 3.65370 3.85335 3.95480 4.00501 4.19062 4.28773 4.31705 4.36135 4.40065 4.43374 4.44597 4.58380 4.59188 4.67311 4.70311 4.81753 4.88382 4.97299 5.01284 5.06907 5.16604 5.20187 5.23895 5.29684 5.38369 5.48731 5.63876 5.85769 6.26739 6.39525 7.06701 7.13909 7.90939 8.08753 9.24616 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.004270 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.152956 B = 6556.131084 C = 7549.160667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.094 4.094 4 H 0.091 0.909 5 C 0.118 3.882 6 N -0.599 5.599 7 C 0.528 3.472 8 O -0.575 6.575 9 C -0.128 4.128 10 C -0.147 4.147 11 C 0.254 3.746 12 F -0.181 7.181 13 F -0.199 7.199 14 C -0.136 4.136 15 C 0.114 3.886 16 C -0.144 4.144 17 C 0.175 3.825 18 H 0.049 0.951 19 N -0.742 5.742 20 C -0.210 4.210 21 H 0.062 0.938 22 C -0.058 4.058 23 N -0.985 5.985 24 Si 0.938 3.062 25 H -0.285 1.285 26 H -0.255 1.255 27 H -0.302 1.302 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.152 0.848 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.362 0.638 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.075 15.822 -2.420 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.114 4.114 4 H 0.109 0.891 5 C -0.005 4.005 6 N -0.330 5.330 7 C 0.317 3.683 8 O -0.456 6.456 9 C -0.148 4.148 10 C -0.185 4.185 11 C 0.218 3.782 12 F -0.162 7.162 13 F -0.180 7.180 14 C -0.174 4.174 15 C -0.008 4.008 16 C -0.185 4.185 17 C 0.067 3.933 18 H 0.067 0.933 19 N -0.386 5.386 20 C -0.341 4.341 21 H 0.080 0.920 22 C -0.250 4.250 23 N -0.636 5.636 24 Si 0.767 3.233 25 H -0.211 1.211 26 H -0.180 1.180 27 H -0.229 1.229 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.169 0.831 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.196 0.804 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.498 15.733 -2.418 20.871 hybrid contribution 0.267 -0.552 1.283 1.422 sum -13.231 15.182 -1.135 20.170 Atomic orbital electron populations 1.21795 0.94603 1.01995 1.02056 1.21411 0.96255 0.95250 1.02008 1.21699 0.95336 0.96612 0.97736 0.89086 1.21610 0.99217 0.82198 0.97450 1.48167 1.09005 1.06319 1.69516 1.20467 0.86241 0.86178 0.75368 1.90667 1.16149 1.86933 1.51822 1.22600 0.99854 0.91350 1.01033 1.24071 1.04903 0.91716 0.97821 1.22060 0.90119 0.85501 0.80544 1.93023 1.70401 1.73233 1.79526 1.92999 1.87067 1.87662 1.50286 1.23954 0.97548 0.94816 1.01116 1.21783 0.78365 1.02276 0.98366 1.22384 1.01582 0.97279 0.97221 1.20440 0.91061 0.91605 0.90150 0.93333 1.42796 1.18160 1.65916 1.11682 1.18997 0.93050 1.24567 0.97533 0.92002 1.25269 0.97414 1.01323 1.00944 1.69857 1.18482 1.43538 1.31732 0.85678 0.78111 0.78529 0.80976 1.21128 1.18032 1.22880 0.92880 0.91839 0.92246 0.91838 0.93446 0.89006 0.93200 0.83063 0.86903 0.86210 0.86612 0.86643 0.87219 0.92399 0.91585 0.90005 0.80426 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.68 71.98 0.70 -2.53 16 2 C -0.11 -3.00 5.19 30.60 0.16 -2.84 16 3 C -0.09 -2.51 2.14 -10.71 -0.02 -2.53 16 4 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 5 C 0.12 3.25 5.03 86.36 0.43 3.68 16 6 N -0.60 -14.94 2.97 -818.92 -2.43 -17.37 16 7 C 0.53 12.61 7.22 87.65 0.63 13.24 16 8 O -0.58 -17.33 15.31 -3.04 -0.05 -17.38 16 9 C -0.13 -2.10 2.72 -11.02 -0.03 -2.13 16 10 C -0.15 -2.33 7.28 31.12 0.23 -2.10 16 11 C 0.25 4.44 3.27 31.11 0.10 4.54 16 12 F -0.18 -3.38 17.38 44.97 0.78 -2.60 16 13 F -0.20 -4.25 17.41 44.97 0.78 -3.47 16 14 C -0.14 -2.18 7.19 31.11 0.22 -1.96 16 15 C 0.11 2.75 6.08 86.36 0.53 3.28 16 16 C -0.14 -3.84 5.78 30.67 0.18 -3.66 16 17 C 0.18 5.63 2.53 45.02 0.11 5.75 16 18 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 19 N -0.74 -30.31 3.53 -322.81 -1.14 -31.45 16 20 C -0.21 -10.90 10.41 84.03 0.87 -10.03 16 21 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 22 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 23 N -0.98 -60.81 13.97 21.65 0.30 -60.51 16 24 Si 0.94 43.84 27.73 68.60 1.90 45.74 16 25 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.26 -10.74 6.52 99.48 0.65 -10.09 16 27 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 28 H 0.05 1.16 6.70 -2.39 -0.02 1.15 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.49 7.70 -2.38 -0.02 1.48 16 33 H 0.09 2.54 5.73 -2.39 -0.01 2.52 16 34 H 0.05 1.55 6.64 -2.39 -0.02 1.53 16 35 H 0.15 1.81 7.21 -2.39 -0.02 1.79 16 36 H 0.11 1.92 8.09 -2.39 -0.02 1.90 16 37 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.12 2.14 7.43 -2.39 -0.02 2.13 16 40 H 0.11 1.86 5.69 -2.39 -0.01 1.85 16 41 H 0.06 1.71 7.75 -2.38 -0.02 1.70 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.36 14.74 3.80 -92.70 -0.35 14.39 16 45 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -65.95 355.37 5.32 -60.63 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.59 Total: 26.47 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 4.58 Total: -0.07 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -3.27 Total: -109.32 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.05 Total: -17.38 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 1.56 Total: -6.07 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.90 Total: 45.74 kcal Total: -65.95 5.32 -60.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037828837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.455 kcal (2) G-P(sol) polarization free energy of solvation -65.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds