Wall clock time and date at job start Tue Mar 31 2020 11:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09002 * 109.49961 * 305.00645 * 3 2 1 5 5 C 1.53196 * 109.49598 * 65.06552 * 3 2 1 6 6 N 1.46934 * 108.77223 * 174.55466 * 5 3 2 7 7 C 1.34782 * 120.60162 * 126.42309 * 6 5 3 8 8 O 1.21279 * 120.00125 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99688 * 180.02562 * 7 6 5 10 10 C 1.53790 * 113.61006 * 279.13549 * 9 7 6 11 11 C 1.53955 * 87.01624 * 220.05001 * 10 9 7 12 12 F 1.39904 * 113.53644 * 270.81055 * 11 10 9 13 13 F 1.39898 * 113.74519 * 139.94606 * 11 10 9 14 14 C 1.53781 * 87.11548 * 25.36103 * 11 10 9 15 15 C 1.46924 * 118.76578 * 306.44423 * 6 5 3 16 16 C 1.53193 * 108.77426 * 53.58963 * 15 6 5 17 17 C 1.53038 * 109.50012 * 184.93683 * 3 2 1 18 18 H 1.09001 * 109.46364 * 298.70269 * 17 3 2 19 19 N 1.46495 * 109.46285 * 58.66757 * 17 3 2 20 20 C 1.36935 * 120.00175 * 205.00297 * 19 17 3 21 21 H 1.08001 * 119.99905 * 359.97438 * 20 19 17 22 22 C 1.38809 * 119.99966 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00347 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99730 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47305 * 60.00352 * 24 22 20 26 26 H 1.48504 * 109.46909 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47421 * 299.99968 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.09001 * 109.58552 * 294.37777 * 5 3 2 34 34 H 1.09004 * 109.58283 * 54.79884 * 5 3 2 35 35 H 1.08992 * 112.85355 * 50.33043 * 9 7 6 36 36 H 1.08997 * 113.61549 * 334.56493 * 10 9 7 37 37 H 1.08999 * 113.61084 * 105.47342 * 10 9 7 38 38 H 1.08991 * 113.62079 * 220.08853 * 14 11 10 39 39 H 1.09008 * 113.60902 * 89.18485 * 14 11 10 40 40 H 1.09002 * 109.58724 * 293.79962 * 15 6 5 41 41 H 1.09001 * 109.70328 * 173.44596 * 15 6 5 42 42 H 1.09004 * 109.49602 * 185.41377 * 16 15 6 43 43 H 1.08998 * 109.49620 * 65.31619 * 16 15 6 44 44 H 0.96999 * 120.00268 * 24.99666 * 19 17 3 45 45 H 0.97002 * 120.00158 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8416 5 6 1.6365 2.1275 1.3095 6 7 2.2437 3.4648 1.3502 7 6 1.4840 4.5570 1.5661 8 8 0.2878 4.4411 1.7293 9 6 2.1210 5.9223 1.6046 10 6 2.7813 6.2561 2.9528 11 6 2.2174 7.6788 2.7853 12 9 3.0761 8.5426 2.0970 13 9 1.7259 8.2333 3.9719 14 6 1.1263 7.0581 1.8970 15 6 3.6940 3.5892 1.1509 16 6 4.0738 2.8881 -0.1572 17 6 3.5653 1.4450 -0.1241 18 1 4.0001 0.9263 0.7303 19 7 3.9556 0.7617 -1.3598 20 6 5.1938 0.1859 -1.4621 21 1 5.8828 0.2359 -0.6319 22 6 5.5634 -0.4620 -2.6327 23 7 4.7239 -0.5225 -3.6447 24 14 7.2528 -1.2469 -2.7725 25 1 7.4035 -2.2873 -1.7238 26 1 7.4001 -1.8693 -4.1127 27 1 8.2980 -0.2074 -2.5924 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 0.5511 2.2168 1.3558 34 1 1.9931 1.5388 2.1548 35 1 2.7626 6.1144 0.7447 36 1 2.3529 5.7130 3.7951 37 1 3.8701 6.2112 2.9286 38 1 0.8810 7.6597 1.0219 39 1 0.2446 6.7346 2.4503 40 1 4.2188 3.1197 1.9829 41 1 3.9681 4.6426 1.0938 42 1 5.1581 2.8894 -0.2691 43 1 3.6203 3.4145 -0.9970 44 1 3.3370 0.7170 -2.1055 45 1 4.9821 -0.9756 -4.4626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037828845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:08 Heat of formation + Delta-G solvation = -111.658632 kcal Electronic energy + Delta-G solvation = -27593.777872 eV Core-core repulsion = 23475.505403 eV Total energy + Delta-G solvation = -4118.272469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.10280 -47.43161 -40.61012 -38.41561 -36.85570 -34.81464 -33.81406 -31.78042 -29.58487 -29.07941 -26.64615 -26.62475 -24.64869 -23.85225 -22.82951 -21.13778 -20.82513 -19.71720 -19.16233 -17.97775 -17.18576 -17.03380 -16.88483 -16.45708 -15.79525 -15.44960 -14.92955 -14.38857 -14.29912 -14.17159 -14.00755 -13.77297 -13.70040 -13.40216 -13.32474 -13.16978 -12.95131 -12.76646 -12.28860 -12.12950 -11.96575 -11.78809 -11.64548 -11.64146 -11.33608 -10.96584 -10.89779 -10.79858 -10.74260 -10.40345 -10.27463 -10.20452 -9.86026 -9.73128 -9.64971 -8.94556 -8.57133 -7.01698 -5.82021 -3.11111 2.44159 2.89771 3.13118 3.39351 3.43349 3.44359 3.45391 3.89535 3.97661 4.05042 4.53264 4.56362 4.89034 4.98855 5.06321 5.09509 5.15414 5.19835 5.21453 5.28929 5.38377 5.40379 5.51486 5.55784 5.63104 5.63298 5.75523 5.83555 5.95764 6.06745 6.10190 6.25958 6.30043 6.34152 6.40860 6.49571 6.61829 6.77169 6.90668 6.99626 7.39484 7.63510 8.08400 8.36058 9.47579 10.04563 10.39279 11.40241 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.003263 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.448351 B = 8578.138497 C = 9773.730234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.118 3.882 6 N -0.600 5.600 7 C 0.528 3.472 8 O -0.544 6.544 9 C -0.133 4.133 10 C -0.148 4.148 11 C 0.255 3.745 12 F -0.178 7.178 13 F -0.189 7.189 14 C -0.141 4.141 15 C 0.105 3.895 16 C -0.153 4.153 17 C 0.184 3.816 18 H 0.048 0.952 19 N -0.720 5.720 20 C -0.241 4.241 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 12.560 12.940 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.332 5.332 7 C 0.315 3.685 8 O -0.422 6.422 9 C -0.154 4.154 10 C -0.186 4.186 11 C 0.218 3.782 12 F -0.159 7.159 13 F -0.169 7.169 14 C -0.180 4.180 15 C -0.018 4.018 16 C -0.194 4.194 17 C 0.073 3.927 18 H 0.066 0.934 19 N -0.360 5.360 20 C -0.372 4.372 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.143 0.857 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.218 0.782 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.256 12.428 13.034 19.065 hybrid contribution 1.068 -0.230 -0.497 1.201 sum -5.188 12.198 12.537 18.245 Atomic orbital electron populations 1.21844 0.96789 1.01075 1.01289 1.21451 0.94386 0.95659 1.03506 1.21783 0.97665 0.96311 0.96671 0.91195 1.21793 0.99439 0.81270 0.97923 1.48151 1.08643 1.06744 1.69659 1.19964 0.86676 0.85343 0.76473 1.90683 1.14675 1.86355 1.50473 1.22550 0.99361 0.93634 0.99884 1.24073 1.03568 0.92601 0.98405 1.22040 0.90458 0.85510 0.80159 1.93034 1.71262 1.72573 1.79006 1.93018 1.87852 1.87933 1.48138 1.23990 0.97950 0.95223 1.00800 1.21921 0.79246 1.01202 0.99441 1.22707 1.02323 0.99365 0.95023 1.20180 0.90749 0.90500 0.91269 0.93423 1.42398 1.16463 1.64461 1.12695 1.19159 0.91800 1.27586 0.98633 0.91292 1.24723 0.98115 1.01454 0.96415 1.69644 1.35323 1.48224 1.04764 0.86307 0.84132 0.79188 0.76766 1.21287 1.21746 1.21316 0.93235 0.93144 0.92988 0.92448 0.89759 0.89071 0.91572 0.85412 0.86528 0.87830 0.88257 0.85659 0.91267 0.90474 0.90458 0.92128 0.78186 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 37.16 0.36 -1.68 16 2 C -0.11 -1.74 5.31 -26.73 -0.14 -1.88 16 3 C -0.10 -1.61 1.92 -90.50 -0.17 -1.79 16 4 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 5 C 0.12 1.59 5.32 -3.70 -0.02 1.57 16 6 N -0.60 -7.52 2.97 -172.76 -0.51 -8.04 16 7 C 0.53 6.65 7.22 -10.98 -0.08 6.57 16 8 O -0.54 -8.51 15.32 5.56 0.09 -8.43 16 9 C -0.13 -1.24 2.71 -90.95 -0.25 -1.48 16 10 C -0.15 -1.16 7.17 -25.82 -0.19 -1.35 16 11 C 0.25 2.34 3.27 -25.83 -0.08 2.25 16 12 F -0.18 -1.82 17.38 2.25 0.04 -1.78 16 13 F -0.19 -2.00 17.41 2.25 0.04 -1.96 16 14 C -0.14 -1.27 7.18 -25.92 -0.19 -1.46 16 15 C 0.11 1.20 6.30 -3.71 -0.02 1.18 16 16 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 17 C 0.18 3.25 2.19 -67.89 -0.15 3.10 16 18 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 19 N -0.72 -16.57 4.33 -53.39 -0.23 -16.80 16 20 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 21 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -27.08 13.06 55.49 0.72 -26.36 16 24 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.58 7.22 -51.93 -0.37 1.21 16 33 H 0.09 1.29 5.72 -51.93 -0.30 1.00 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.13 1.06 7.29 -51.93 -0.38 0.68 16 36 H 0.12 0.89 8.09 -51.93 -0.42 0.47 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.13 1.21 7.45 -51.92 -0.39 0.83 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.70 5.68 -51.93 -0.29 0.40 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.38 9.63 7.51 -40.82 -0.31 9.32 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -29.88 362.03 -7.75 -37.63 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.00 Total: 7.97 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -1.33 Total: -4.24 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.02 Total: -51.20 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.08 Total: -3.74 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.88 -7.75 -37.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037828845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.026 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds