Wall clock time and date at job start Tue Mar 31 2020 11:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46794 * 2 1 4 4 H 1.08998 * 109.52782 * 305.07614 * 3 2 1 5 5 C 1.53193 * 109.49827 * 65.16452 * 3 2 1 6 6 N 1.46920 * 108.77594 * 174.58455 * 5 3 2 7 7 C 1.34773 * 120.63316 * 126.41194 * 6 5 3 8 8 O 1.21284 * 120.00169 * 175.57930 * 7 6 5 9 9 C 1.50701 * 120.00190 * 355.57112 * 7 6 5 10 10 C 1.53006 * 115.54446 * 80.12564 * 9 7 6 11 11 F 1.39899 * 109.47321 * 296.06771 * 10 9 7 12 12 F 1.39898 * 109.47072 * 56.07314 * 10 9 7 13 13 C 1.52996 * 117.49805 * 294.42238 * 9 7 6 14 14 C 1.52994 * 117.50137 * 225.79792 * 9 7 6 15 15 C 1.46927 * 118.73846 * 306.38813 * 6 5 3 16 16 C 1.53195 * 108.77592 * 53.60601 * 15 6 5 17 17 C 1.53033 * 109.31268 * 305.36813 * 16 15 6 18 18 H 1.08999 * 109.46458 * 301.35446 * 17 16 15 19 19 N 1.46502 * 109.45800 * 181.38314 * 17 16 15 20 20 C 1.36940 * 120.00108 * 84.99937 * 19 17 16 21 21 H 1.08001 * 119.99843 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00026 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99873 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00066 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47282 * 270.00473 * 24 22 20 26 26 H 1.48501 * 109.46916 * 30.00191 * 24 22 20 27 27 H 1.48495 * 109.47472 * 150.00314 * 24 22 20 28 28 H 1.08998 * 109.46924 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47018 * 300.00051 * 1 2 3 30 30 H 1.09004 * 109.46976 * 60.00363 * 1 2 3 31 31 H 1.09002 * 109.46751 * 239.99695 * 2 1 3 32 32 H 1.08996 * 109.46516 * 120.00053 * 2 1 3 33 33 H 1.09004 * 109.58714 * 54.79121 * 5 3 2 34 34 H 1.09002 * 109.58074 * 294.36853 * 5 3 2 35 35 H 1.09002 * 109.46744 * 176.07061 * 10 9 7 36 36 H 1.08998 * 117.50050 * 359.97438 * 13 9 7 37 37 H 1.09010 * 117.49825 * 145.01610 * 13 9 7 38 38 H 1.09008 * 117.49681 * 214.97588 * 14 9 7 39 39 H 1.08994 * 117.50073 * 0.02562 * 14 9 7 40 40 H 1.09000 * 109.58835 * 293.82105 * 15 6 5 41 41 H 1.09002 * 109.70734 * 173.46842 * 15 6 5 42 42 H 1.08995 * 109.49606 * 185.41152 * 16 15 6 43 43 H 1.09006 * 109.49340 * 65.32130 * 16 15 6 44 44 H 0.97005 * 119.99911 * 265.00176 * 19 17 16 45 45 H 0.97008 * 120.00207 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6386 2.1267 1.3105 6 7 2.2451 3.4643 1.3507 7 6 1.4858 4.5563 1.5682 8 8 2.0076 5.6455 1.6790 9 6 -0.0117 4.4242 1.6734 10 6 -0.5381 3.9428 3.0271 11 9 -0.0824 2.6424 3.2690 12 9 -0.0762 4.7942 4.0365 13 6 -0.7715 3.9814 0.4215 14 6 -0.8659 5.4313 0.9009 15 6 3.6952 3.5887 1.1499 16 6 4.0737 2.8880 -0.1588 17 6 3.5653 1.4450 -0.1256 18 1 4.0007 0.9260 0.7283 19 7 3.9543 0.7620 -1.3620 20 6 5.1919 0.1851 -1.4652 21 1 5.8814 0.2339 -0.6354 22 6 5.5602 -0.4625 -2.6365 23 7 4.7201 -0.5216 -3.6479 24 14 7.2482 -1.2502 -2.7771 25 1 8.2139 -0.2586 -3.3149 26 1 7.6973 -1.7011 -1.4353 27 1 7.1753 -2.4170 -3.6927 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9965 1.5376 2.1549 34 1 0.5533 2.2160 1.3585 35 1 -1.6280 3.9498 3.0164 36 1 -0.1884 3.7861 -0.4784 37 1 -1.6467 3.3469 0.5620 38 1 -1.8031 5.7506 1.3568 39 1 -0.3448 6.1892 0.3161 40 1 4.2209 3.1189 1.9812 41 1 3.9693 4.6422 1.0929 42 1 5.1578 2.8894 -0.2718 43 1 3.6193 3.4147 -0.9980 44 1 3.3351 0.7185 -2.1074 45 1 4.9776 -0.9738 -4.4666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037848201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:58 Heat of formation + Delta-G solvation = -104.961298 kcal Electronic energy + Delta-G solvation = -28685.147039 eV Core-core repulsion = 24567.164988 eV Total energy + Delta-G solvation = -4117.982051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.22649 -47.22820 -40.46674 -38.18975 -36.87070 -34.59880 -33.72944 -31.86748 -29.74167 -28.60516 -27.58575 -25.29574 -24.33400 -23.48298 -22.88702 -22.08486 -20.58193 -19.92080 -18.79493 -18.03418 -17.47472 -17.34017 -17.06391 -16.22804 -15.87530 -15.07504 -14.92879 -14.43139 -14.25664 -14.05083 -14.00131 -13.74520 -13.56392 -13.37413 -13.15423 -13.03595 -12.83560 -12.58348 -12.18010 -11.99029 -11.92690 -11.85138 -11.54817 -11.35148 -11.00327 -10.94003 -10.88634 -10.82637 -10.64592 -10.36917 -10.24617 -10.18056 -9.85258 -9.72285 -9.53399 -8.90690 -8.47833 -6.97597 -5.79216 -3.07586 2.43768 2.83313 3.13540 3.37281 3.41920 3.47800 3.48721 3.78356 4.18060 4.24446 4.25720 4.56808 4.71047 4.82923 5.00645 5.11518 5.16423 5.19181 5.29018 5.43095 5.47006 5.53901 5.55728 5.58484 5.64462 5.67682 5.75397 5.80133 6.01475 6.07510 6.12240 6.25499 6.35082 6.37095 6.45781 6.50690 6.67247 6.83713 6.91616 7.04548 7.47209 7.68293 8.15231 8.39179 9.50901 10.07668 10.42786 11.43268 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.003795 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.238591 B = 7375.524107 C = 7841.783560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.105 4.105 4 H 0.069 0.931 5 C 0.111 3.889 6 N -0.594 5.594 7 C 0.552 3.448 8 O -0.535 6.535 9 C -0.231 4.231 10 C 0.310 3.690 11 F -0.194 7.194 12 F -0.195 7.195 13 C -0.142 4.142 14 C -0.124 4.124 15 C 0.112 3.888 16 C -0.149 4.149 17 C 0.183 3.817 18 H 0.048 0.952 19 N -0.720 5.720 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.282 1.282 27 H -0.292 1.292 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.612 7.538 11.237 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.125 4.125 4 H 0.087 0.913 5 C -0.012 4.012 6 N -0.325 5.325 7 C 0.338 3.662 8 O -0.412 6.412 9 C -0.235 4.235 10 C 0.255 3.745 11 F -0.175 7.175 12 F -0.176 7.176 13 C -0.179 4.179 14 C -0.162 4.162 15 C -0.011 4.011 16 C -0.190 4.190 17 C 0.072 3.928 18 H 0.066 0.934 19 N -0.360 5.360 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.208 1.208 27 H -0.218 1.218 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.104 7.997 11.345 20.513 hybrid contribution 0.959 -0.575 -0.294 1.156 sum -14.145 7.422 11.051 19.424 Atomic orbital electron populations 1.21847 0.96907 1.01204 1.00978 1.21459 0.94297 0.95711 1.03636 1.21803 0.97923 0.96274 0.96472 0.91287 1.22146 0.98847 0.81906 0.98308 1.48075 1.08548 1.06672 1.69248 1.18998 0.86177 0.84146 0.76878 1.90686 1.73586 1.26565 1.50349 1.22467 0.94446 1.11789 0.94763 1.21099 0.97431 0.72923 0.83006 1.93009 1.91401 1.38304 1.94793 1.93032 1.91244 1.70830 1.62499 1.23223 1.01350 0.98058 0.95226 1.23069 0.99667 0.93236 1.00193 1.21755 0.78567 1.02132 0.98620 1.22673 1.02253 0.98952 0.95152 1.20199 0.90708 0.90635 0.91235 0.93398 1.42394 1.16487 1.64477 1.12640 1.19221 0.91827 1.27186 0.98639 0.91253 1.24703 0.98098 1.01540 0.96412 1.69654 1.35200 1.48522 1.04723 0.86232 0.84175 0.78744 0.77297 1.21798 1.20789 1.21840 0.93099 0.93316 0.93002 0.89711 0.92374 0.91265 0.89119 0.86277 0.86767 0.86875 0.87110 0.86904 0.91660 0.89730 0.90534 0.92327 0.78250 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.68 37.16 0.36 -1.40 16 2 C -0.11 -1.68 5.31 -26.73 -0.14 -1.82 16 3 C -0.10 -1.58 1.92 -90.50 -0.17 -1.76 16 4 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 5 C 0.11 1.47 3.74 -3.71 -0.01 1.45 16 6 N -0.59 -8.75 2.97 -172.77 -0.51 -9.27 16 7 C 0.55 8.29 6.66 -10.99 -0.07 8.21 16 8 O -0.53 -9.84 16.43 5.55 0.09 -9.75 16 9 C -0.23 -2.45 1.09 -155.66 -0.17 -2.62 16 10 C 0.31 2.95 5.08 37.16 0.19 3.13 16 11 F -0.19 -2.11 14.31 2.25 0.03 -2.08 16 12 F -0.19 -2.43 17.17 2.25 0.04 -2.39 16 13 C -0.14 -1.11 8.51 -26.73 -0.23 -1.34 16 14 C -0.12 -1.00 9.85 -26.73 -0.26 -1.27 16 15 C 0.11 1.75 6.42 -3.71 -0.02 1.72 16 16 C -0.15 -2.63 5.66 -26.61 -0.15 -2.78 16 17 C 0.18 3.41 2.19 -67.89 -0.15 3.26 16 18 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 19 N -0.72 -16.91 4.33 -53.39 -0.23 -17.14 16 20 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 24 Si 0.90 22.00 29.55 -169.99 -5.02 16.98 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.49 6.70 -51.93 -0.35 0.14 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.55 7.22 -51.93 -0.37 1.17 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.03 2.62 -51.93 -0.14 0.89 16 35 H 0.12 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.11 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.11 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.37 7.04 -51.93 -0.37 1.01 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.38 9.66 7.51 -40.82 -0.31 9.35 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -31.86 361.79 -7.50 -39.36 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.99 Total: 7.54 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.08 Total: -2.10 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.02 Total: -53.02 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.07 Total: -4.47 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.86 -7.50 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.603 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds