Wall clock time and date at job start Tue Mar 31 2020 11:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46794 * 2 1 4 4 H 1.08998 * 109.52782 * 305.07614 * 3 2 1 5 5 C 1.53193 * 109.49827 * 65.16452 * 3 2 1 6 6 N 1.46920 * 108.77594 * 174.58455 * 5 3 2 7 7 C 1.34773 * 120.63316 * 126.41194 * 6 5 3 8 8 O 1.21284 * 120.00169 * 175.57930 * 7 6 5 9 9 C 1.50701 * 120.00190 * 355.57112 * 7 6 5 10 10 C 1.53006 * 115.54446 * 80.12564 * 9 7 6 11 11 F 1.39899 * 109.47321 * 296.06771 * 10 9 7 12 12 F 1.39898 * 109.47072 * 56.07314 * 10 9 7 13 13 C 1.52996 * 117.49805 * 294.42238 * 9 7 6 14 14 C 1.52994 * 117.50137 * 225.79792 * 9 7 6 15 15 C 1.46927 * 118.73846 * 306.38813 * 6 5 3 16 16 C 1.53195 * 108.77592 * 53.60601 * 15 6 5 17 17 C 1.53033 * 109.31268 * 305.36813 * 16 15 6 18 18 H 1.08999 * 109.46458 * 301.35446 * 17 16 15 19 19 N 1.46502 * 109.45800 * 181.38314 * 17 16 15 20 20 C 1.36940 * 120.00108 * 84.99937 * 19 17 16 21 21 H 1.08001 * 119.99843 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00026 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99873 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00066 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47282 * 270.00473 * 24 22 20 26 26 H 1.48501 * 109.46916 * 30.00191 * 24 22 20 27 27 H 1.48495 * 109.47472 * 150.00314 * 24 22 20 28 28 H 1.08998 * 109.46924 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47018 * 300.00051 * 1 2 3 30 30 H 1.09004 * 109.46976 * 60.00363 * 1 2 3 31 31 H 1.09002 * 109.46751 * 239.99695 * 2 1 3 32 32 H 1.08996 * 109.46516 * 120.00053 * 2 1 3 33 33 H 1.09004 * 109.58714 * 54.79121 * 5 3 2 34 34 H 1.09002 * 109.58074 * 294.36853 * 5 3 2 35 35 H 1.09002 * 109.46744 * 176.07061 * 10 9 7 36 36 H 1.08998 * 117.50050 * 359.97438 * 13 9 7 37 37 H 1.09010 * 117.49825 * 145.01610 * 13 9 7 38 38 H 1.09008 * 117.49681 * 214.97588 * 14 9 7 39 39 H 1.08994 * 117.50073 * 0.02562 * 14 9 7 40 40 H 1.09000 * 109.58835 * 293.82105 * 15 6 5 41 41 H 1.09002 * 109.70734 * 173.46842 * 15 6 5 42 42 H 1.08995 * 109.49606 * 185.41152 * 16 15 6 43 43 H 1.09006 * 109.49340 * 65.32130 * 16 15 6 44 44 H 0.97005 * 119.99911 * 265.00176 * 19 17 16 45 45 H 0.97008 * 120.00207 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6386 2.1267 1.3105 6 7 2.2451 3.4643 1.3507 7 6 1.4858 4.5563 1.5682 8 8 2.0076 5.6455 1.6790 9 6 -0.0117 4.4242 1.6734 10 6 -0.5381 3.9428 3.0271 11 9 -0.0824 2.6424 3.2690 12 9 -0.0762 4.7942 4.0365 13 6 -0.7715 3.9814 0.4215 14 6 -0.8659 5.4313 0.9009 15 6 3.6952 3.5887 1.1499 16 6 4.0737 2.8880 -0.1588 17 6 3.5653 1.4450 -0.1256 18 1 4.0007 0.9260 0.7283 19 7 3.9543 0.7620 -1.3620 20 6 5.1919 0.1851 -1.4652 21 1 5.8814 0.2339 -0.6354 22 6 5.5602 -0.4625 -2.6365 23 7 4.7201 -0.5216 -3.6479 24 14 7.2482 -1.2502 -2.7771 25 1 8.2139 -0.2586 -3.3149 26 1 7.6973 -1.7011 -1.4353 27 1 7.1753 -2.4170 -3.6927 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9965 1.5376 2.1549 34 1 0.5533 2.2160 1.3585 35 1 -1.6280 3.9498 3.0164 36 1 -0.1884 3.7861 -0.4784 37 1 -1.6467 3.3469 0.5620 38 1 -1.8031 5.7506 1.3568 39 1 -0.3448 6.1892 0.3161 40 1 4.2209 3.1189 1.9812 41 1 3.9693 4.6422 1.0929 42 1 5.1578 2.8894 -0.2718 43 1 3.6193 3.4147 -0.9980 44 1 3.3351 0.7185 -2.1074 45 1 4.9776 -0.9738 -4.4666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037848201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:57 Heat of formation + Delta-G solvation = -124.255300 kcal Electronic energy + Delta-G solvation = -28685.983690 eV Core-core repulsion = 24567.164988 eV Total energy + Delta-G solvation = -4118.818702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.97670 -48.00328 -41.60411 -39.44787 -37.78731 -36.19778 -35.10989 -33.60529 -31.36768 -29.90148 -28.31448 -26.79804 -25.52342 -24.99022 -23.49487 -23.41345 -21.84891 -21.24121 -19.97953 -19.08277 -18.87032 -18.22972 -18.09428 -17.39692 -16.86203 -16.71863 -16.07907 -15.66444 -15.59758 -15.43604 -15.05408 -14.89825 -14.71753 -14.54545 -14.45412 -14.23790 -13.87625 -13.68812 -13.50960 -13.19173 -13.05431 -12.84453 -12.69719 -12.68784 -12.53658 -12.46619 -12.21048 -12.08834 -11.83477 -11.65091 -11.59117 -11.51500 -11.44808 -11.18573 -10.88287 -10.76110 -9.75597 -8.97226 -7.92490 -5.19465 1.34537 1.47388 1.48033 1.55999 1.81090 2.40134 2.56647 2.67552 3.15380 3.30481 3.40631 3.51679 3.61721 3.75452 3.79765 3.97332 4.04487 4.11325 4.14364 4.24897 4.28376 4.42938 4.50475 4.57591 4.65814 4.67447 4.71842 4.77516 4.82458 4.90571 4.93224 4.97928 5.10713 5.12763 5.15186 5.33491 5.40641 5.48486 5.50833 5.57531 5.67726 6.29074 6.31130 6.98778 7.36670 8.11900 8.36114 9.30683 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.003795 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.238591 B = 7375.524107 C = 7841.783560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.093 4.093 4 H 0.065 0.935 5 C 0.120 3.880 6 N -0.598 5.598 7 C 0.543 3.457 8 O -0.578 6.578 9 C -0.255 4.255 10 C 0.305 3.695 11 F -0.204 7.204 12 F -0.217 7.217 13 C -0.125 4.125 14 C -0.115 4.115 15 C 0.118 3.882 16 C -0.136 4.136 17 C 0.178 3.822 18 H 0.041 0.959 19 N -0.727 5.727 20 C -0.234 4.234 21 H 0.072 0.928 22 C -0.070 4.070 23 N -0.967 5.967 24 Si 0.964 3.036 25 H -0.292 1.292 26 H -0.271 1.271 27 H -0.296 1.296 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.178 0.822 36 H 0.097 0.903 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.044 0.956 44 H 0.373 0.627 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.178 7.443 12.713 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.113 4.113 4 H 0.083 0.917 5 C -0.002 4.002 6 N -0.329 5.329 7 C 0.332 3.668 8 O -0.458 6.458 9 C -0.259 4.259 10 C 0.251 3.749 11 F -0.185 7.185 12 F -0.198 7.198 13 C -0.162 4.162 14 C -0.152 4.152 15 C -0.005 4.005 16 C -0.177 4.177 17 C 0.069 3.931 18 H 0.060 0.940 19 N -0.366 5.366 20 C -0.366 4.366 21 H 0.090 0.910 22 C -0.263 4.263 23 N -0.618 5.618 24 Si 0.794 3.206 25 H -0.219 1.219 26 H -0.196 1.196 27 H -0.223 1.223 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.195 0.805 36 H 0.116 0.884 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.206 0.794 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -17.678 7.905 12.866 23.250 hybrid contribution 1.786 -0.479 -0.728 1.987 sum -15.892 7.426 12.138 21.332 Atomic orbital electron populations 1.21794 0.93730 1.02212 1.02468 1.21367 0.97088 0.94621 1.01641 1.21665 0.94905 0.97030 0.97650 0.91659 1.22171 1.00369 0.80831 0.96805 1.48174 1.08031 1.07537 1.69113 1.19860 0.88350 0.83200 0.75433 1.90656 1.75015 1.28063 1.52099 1.22505 0.91282 1.15142 0.96944 1.21719 1.00026 0.71819 0.81299 1.92979 1.91817 1.38974 1.94746 1.92991 1.91767 1.71599 1.63455 1.23407 1.01424 0.98582 0.92777 1.23235 1.00075 0.92878 0.99005 1.21556 0.80029 1.01335 0.97570 1.22451 1.00974 0.98344 0.95964 1.20406 0.93494 0.90253 0.88904 0.94048 1.42517 1.15451 1.64783 1.13865 1.19555 0.92761 1.25936 0.98355 0.91037 1.25407 1.01368 1.03046 0.96468 1.69797 1.36863 1.50037 1.05089 0.85270 0.80374 0.77507 0.77412 1.21913 1.19610 1.22320 0.92460 0.90782 0.92436 0.93659 0.92419 0.91010 0.86278 0.80542 0.88411 0.82875 0.83362 0.88942 0.90672 0.90545 0.92227 0.93693 0.79449 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.68 71.99 0.70 -2.23 16 2 C -0.11 -3.14 5.31 30.60 0.16 -2.98 16 3 C -0.09 -2.74 1.92 -10.72 -0.02 -2.76 16 4 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 5 C 0.12 2.96 3.74 86.36 0.32 3.28 16 6 N -0.60 -17.19 2.97 -818.90 -2.43 -19.62 16 7 C 0.54 15.84 6.66 87.66 0.58 16.42 16 8 O -0.58 -21.51 16.43 -3.04 -0.05 -21.56 16 9 C -0.25 -4.66 1.09 -52.93 -0.06 -4.72 16 10 C 0.30 4.58 5.08 71.98 0.37 4.95 16 11 F -0.20 -3.67 14.31 44.97 0.64 -3.03 16 12 F -0.22 -4.89 17.17 44.97 0.77 -4.12 16 13 C -0.13 -1.46 8.51 30.59 0.26 -1.20 16 14 C -0.11 -1.47 9.85 30.59 0.30 -1.17 16 15 C 0.12 3.75 6.42 86.36 0.55 4.30 16 16 C -0.14 -4.96 5.66 30.67 0.17 -4.79 16 17 C 0.18 6.76 2.19 45.02 0.10 6.86 16 18 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 19 N -0.73 -35.13 4.33 -322.81 -1.40 -36.53 16 20 C -0.23 -12.67 9.93 84.03 0.83 -11.84 16 21 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 22 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 23 N -0.97 -58.09 13.06 21.65 0.28 -57.81 16 24 Si 0.96 45.90 29.55 68.60 2.03 47.92 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 27 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.14 6.70 -2.39 -0.02 1.12 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 1.67 7.22 -2.39 -0.02 1.66 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.12 2.28 2.62 -2.39 -0.01 2.27 16 35 H 0.18 0.68 8.10 -2.39 -0.02 0.67 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.15 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.15 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.08 2.57 7.04 -2.39 -0.02 2.55 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.37 19.47 7.51 -92.70 -0.70 18.77 16 45 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 Total: -1.00 -72.73 361.79 4.89 -67.84 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.30 Total: 26.30 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 4.74 Total: 0.62 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -3.55 Total: -113.96 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.56 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 1.42 Total: -7.15 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -72.73 4.89 -67.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.417 kcal (2) G-P(sol) polarization free energy of solvation -72.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds