Wall clock time and date at job start Tue Mar 31 2020 11:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47266 * 2 1 4 4 H 1.08994 * 109.49682 * 304.93856 * 3 2 1 5 5 C 1.53193 * 109.49374 * 64.99674 * 3 2 1 6 6 N 1.46929 * 108.89390 * 174.54826 * 5 3 2 7 7 C 1.34776 * 120.63216 * 126.45965 * 6 5 3 8 8 O 1.21283 * 119.99843 * 174.96376 * 7 6 5 9 9 C 1.50699 * 120.00143 * 354.96566 * 7 6 5 10 10 C 1.52996 * 115.55142 * 278.61814 * 9 7 6 11 11 F 1.39903 * 109.46860 * 304.98327 * 10 9 7 12 12 F 1.39898 * 109.47507 * 64.97849 * 10 9 7 13 13 C 1.53001 * 117.49936 * 132.90540 * 9 7 6 14 14 C 1.53000 * 117.49728 * 64.28197 * 9 7 6 15 15 C 1.46968 * 118.71217 * 306.64580 * 6 5 3 16 16 C 1.53192 * 108.89043 * 53.35606 * 15 6 5 17 17 C 1.53040 * 109.52555 * 184.85101 * 3 2 1 18 18 H 1.08996 * 109.45782 * 58.65083 * 17 3 2 19 19 N 1.46498 * 109.46132 * 298.67366 * 17 3 2 20 20 C 1.36937 * 119.99970 * 154.99857 * 19 17 3 21 21 H 1.08004 * 119.99919 * 0.02562 * 20 19 17 22 22 C 1.38807 * 120.00249 * 180.02562 * 20 19 17 23 23 N 1.31618 * 119.99828 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00235 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47386 * 89.99866 * 24 22 20 26 26 H 1.48503 * 109.47272 * 209.99678 * 24 22 20 27 27 H 1.48501 * 109.47369 * 329.99869 * 24 22 20 28 28 H 1.09002 * 109.46975 * 60.00114 * 1 2 3 29 29 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46969 * 300.00086 * 1 2 3 31 31 H 1.08999 * 109.47464 * 240.00068 * 2 1 3 32 32 H 1.09002 * 109.46975 * 119.99886 * 2 1 3 33 33 H 1.08996 * 109.59276 * 294.40903 * 5 3 2 34 34 H 1.09004 * 109.58765 * 54.69662 * 5 3 2 35 35 H 1.08995 * 109.47216 * 184.98403 * 10 9 7 36 36 H 1.09001 * 117.49333 * 0.02562 * 13 9 7 37 37 H 1.08993 * 117.50046 * 145.02404 * 13 9 7 38 38 H 1.08998 * 117.50173 * 214.98281 * 14 9 7 39 39 H 1.09004 * 117.49661 * 0.02562 * 14 9 7 40 40 H 1.08996 * 109.46606 * 293.56700 * 15 6 5 41 41 H 1.09003 * 109.59416 * 173.21349 * 15 6 5 42 42 H 1.09000 * 109.49800 * 185.49600 * 16 15 6 43 43 H 1.08992 * 109.52723 * 65.40511 * 16 15 6 44 44 H 0.96998 * 120.00068 * 335.00618 * 19 17 3 45 45 H 0.97008 * 119.99939 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2409 3.4658 1.3526 7 6 1.4806 4.5573 1.5691 8 8 2.0026 5.6449 1.6940 9 6 -0.0182 4.4264 1.6559 10 6 -0.7541 4.3658 0.3159 11 9 -0.4124 5.4824 -0.4546 12 9 -0.3880 3.1998 -0.3650 13 6 -0.7226 5.1294 2.8181 14 6 -0.5897 3.6051 2.8134 15 6 3.6914 3.5908 1.1516 16 6 4.0734 2.8890 -0.1554 17 6 3.5656 1.4457 -0.1220 18 1 3.8574 0.9367 -1.0406 19 7 4.1486 0.7500 1.0279 20 6 5.3870 0.1747 0.9243 21 1 5.9340 0.2343 -0.0050 22 6 5.9392 -0.4849 2.0137 23 7 5.2728 -0.5570 3.1464 24 14 7.6287 -1.2689 1.8726 25 1 8.6671 -0.2805 2.2601 26 1 7.7050 -2.4463 2.7745 27 1 7.8574 -1.7034 0.4711 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5496 2.2168 1.3541 34 1 1.9891 1.5387 2.1547 35 1 -1.8297 4.3612 0.4920 36 1 -0.1019 5.6868 3.5195 37 1 -1.7104 5.5490 2.6281 38 1 -1.4901 3.0220 2.6204 39 1 0.1184 3.1598 3.5123 40 1 4.2153 3.1222 1.9846 41 1 3.9628 4.6449 1.0932 42 1 5.1578 2.8906 -0.2658 43 1 3.6212 3.4143 -0.9966 44 1 3.6574 0.6967 1.8627 45 1 5.6588 -1.0177 3.9078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037848202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:01 Heat of formation + Delta-G solvation = -102.829626 kcal Electronic energy + Delta-G solvation = -29287.266045 eV Core-core repulsion = 25169.376430 eV Total energy + Delta-G solvation = -4117.889615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.06703 -47.07228 -40.34080 -38.22654 -36.73655 -34.20427 -33.71929 -31.79961 -29.56708 -28.38825 -27.51373 -25.32110 -24.20008 -23.62518 -22.81182 -22.46032 -20.55045 -19.34833 -18.47702 -17.67885 -17.38209 -17.24842 -17.07378 -16.10850 -15.67920 -14.92196 -14.68394 -14.47747 -14.23101 -13.98487 -13.89966 -13.76679 -13.42641 -13.27372 -13.13001 -12.86930 -12.74043 -12.52914 -12.17704 -11.93108 -11.81013 -11.71311 -11.42371 -11.06914 -10.97524 -10.86830 -10.78287 -10.75529 -10.59078 -10.26918 -10.20144 -10.16557 -9.83608 -9.63055 -9.41725 -8.90259 -8.21370 -6.95762 -5.78596 -3.06146 2.58461 2.98595 3.27211 3.42580 3.48634 3.49358 3.49486 3.89373 4.30733 4.34976 4.37617 4.58792 4.82620 4.95712 5.09369 5.21407 5.24902 5.31753 5.36625 5.53443 5.57295 5.63164 5.66188 5.72285 5.74262 5.81163 5.87844 5.90605 6.07537 6.16593 6.28232 6.35702 6.38651 6.50201 6.58816 6.63224 6.77383 6.82655 6.98500 7.03348 7.69472 7.70305 8.33001 8.40414 9.52162 10.08828 10.44171 11.44097 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018611 B = 0.004488 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.133200 B = 6237.291967 C = 6654.801594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.071 0.929 5 C 0.111 3.889 6 N -0.589 5.589 7 C 0.550 3.450 8 O -0.539 6.539 9 C -0.228 4.228 10 C 0.310 3.690 11 F -0.196 7.196 12 F -0.190 7.190 13 C -0.126 4.126 14 C -0.145 4.145 15 C 0.120 3.880 16 C -0.149 4.149 17 C 0.177 3.823 18 H 0.051 0.949 19 N -0.718 5.718 20 C -0.235 4.235 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.934 5.934 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.283 1.283 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.710 7.088 -3.372 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.090 0.910 5 C -0.011 4.011 6 N -0.320 5.320 7 C 0.335 3.665 8 O -0.416 6.416 9 C -0.232 4.232 10 C 0.256 3.744 11 F -0.177 7.177 12 F -0.171 7.171 13 C -0.163 4.163 14 C -0.182 4.182 15 C -0.001 4.001 16 C -0.190 4.190 17 C 0.067 3.933 18 H 0.068 0.932 19 N -0.360 5.360 20 C -0.366 4.366 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.583 5.583 24 Si 0.735 3.265 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.209 1.209 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.217 7.564 -3.392 18.213 hybrid contribution 0.988 -0.545 0.051 1.129 sum -15.229 7.019 -3.341 17.098 Atomic orbital electron populations 1.21825 0.96847 1.00791 1.01206 1.21414 0.94247 0.95812 1.03340 1.21732 0.97299 0.96044 0.97083 0.91037 1.21968 0.98039 0.82118 0.98983 1.48060 1.08713 1.06428 1.68766 1.18969 0.86073 0.84166 0.77246 1.90675 1.73663 1.26660 1.50601 1.22483 0.95159 1.13065 0.92486 1.21051 0.98208 0.71797 0.83322 1.93030 1.94328 1.53089 1.77240 1.93035 1.93654 1.48777 1.81605 1.23062 1.01297 0.95234 0.96733 1.23225 1.03092 0.94630 0.97265 1.21614 0.78186 1.00952 0.99372 1.22518 1.01747 0.99033 0.95667 1.20246 0.89835 0.90666 0.92542 0.93152 1.42453 1.18965 1.64056 1.10540 1.19228 0.93568 1.26712 0.97097 0.91282 1.24676 0.98505 1.01572 0.96017 1.69644 1.38048 1.48333 1.02238 0.86240 0.84501 0.78711 0.77024 1.21862 1.21920 1.20864 0.93154 0.93330 0.93179 0.92049 0.90600 0.89794 0.90742 0.86554 0.86979 0.87225 0.86944 0.86808 0.89893 0.90524 0.90762 0.93404 0.78206 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.67 37.16 0.36 -1.45 16 2 C -0.11 -1.67 5.19 -26.73 -0.14 -1.81 16 3 C -0.10 -1.62 1.94 -90.50 -0.18 -1.79 16 4 H 0.07 1.12 7.09 -51.93 -0.37 0.75 16 5 C 0.11 1.70 3.87 -3.71 -0.01 1.69 16 6 N -0.59 -9.87 2.98 -172.73 -0.51 -10.39 16 7 C 0.55 9.10 6.65 -10.99 -0.07 9.03 16 8 O -0.54 -10.75 16.45 5.55 0.09 -10.65 16 9 C -0.23 -2.68 1.10 -155.66 -0.17 -2.85 16 10 C 0.31 3.32 5.09 37.16 0.19 3.51 16 11 F -0.20 -2.68 17.15 2.25 0.04 -2.64 16 12 F -0.19 -2.30 13.91 2.25 0.03 -2.27 16 13 C -0.13 -1.12 9.86 -26.73 -0.26 -1.39 16 14 C -0.15 -1.26 8.07 -26.73 -0.22 -1.47 16 15 C 0.12 2.24 6.16 -3.69 -0.02 2.21 16 16 C -0.15 -2.71 5.78 -26.61 -0.15 -2.86 16 17 C 0.18 3.37 2.53 -67.89 -0.17 3.20 16 18 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 19 N -0.72 -16.48 3.72 -53.39 -0.20 -16.68 16 20 C -0.23 -6.16 9.93 -15.06 -0.15 -6.31 16 21 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 24 Si 0.90 21.94 29.55 -169.99 -5.02 16.91 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.56 6.70 -51.93 -0.35 0.21 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.34 7.70 -51.93 -0.40 0.94 16 33 H 0.08 1.07 2.61 -51.93 -0.14 0.94 16 34 H 0.07 1.28 6.64 -51.93 -0.35 0.93 16 35 H 0.12 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.11 1.11 8.12 -51.93 -0.42 0.69 16 40 H 0.08 1.74 7.74 -51.93 -0.40 1.33 16 41 H 0.08 1.45 7.04 -51.93 -0.37 1.08 16 42 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.38 9.31 5.95 -40.82 -0.24 9.07 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -31.36 356.51 -7.37 -38.73 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.80 Total: 8.62 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.10 Total: -0.72 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.01 Total: -53.35 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.07 Total: -4.91 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.36 -7.37 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.101 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds