Wall clock time and date at job start Tue Mar 31 2020 11:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48493 * 109.47318 * 274.98312 * 3 2 1 5 5 H 1.48497 * 109.46940 * 34.98621 * 3 2 1 6 6 H 1.48505 * 109.46843 * 154.98216 * 3 2 1 7 7 C 1.38817 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00318 * 185.06104 * 7 2 1 9 9 N 1.36947 * 119.99570 * 5.05872 * 7 2 1 10 10 C 1.47056 * 136.05721 * 353.51368 * 9 7 2 11 11 C 1.53499 * 87.98407 * 207.15485 * 10 9 7 12 12 C 1.47063 * 136.05293 * 173.56311 * 9 7 2 13 13 H 1.08993 * 113.46969 * 267.68212 * 12 9 7 14 14 C 1.52995 * 113.46877 * 38.06752 * 12 9 7 15 15 N 1.46506 * 109.47238 * 285.49394 * 14 12 9 16 16 C 1.34779 * 120.00098 * 180.02562 * 15 14 12 17 17 O 1.21279 * 119.99698 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99847 * 179.97438 * 16 15 14 19 19 C 1.52995 * 109.46987 * 179.97438 * 18 16 15 20 20 C 1.52992 * 109.47276 * 299.99871 * 19 18 16 21 21 C 1.52992 * 109.47340 * 300.00198 * 20 19 18 22 22 C 1.53002 * 109.47350 * 179.97438 * 21 20 19 23 23 F 1.39896 * 109.47349 * 179.97438 * 22 21 20 24 24 F 1.39907 * 109.46971 * 299.99949 * 22 21 20 25 25 C 1.53005 * 109.47483 * 60.00080 * 21 20 19 26 26 C 1.53002 * 109.47098 * 59.99727 * 18 16 15 27 27 H 0.96991 * 119.99999 * 0.02562 * 1 2 3 28 28 H 1.09004 * 113.47191 * 321.93581 * 10 9 7 29 29 H 1.08996 * 113.46977 * 92.31679 * 10 9 7 30 30 H 1.09004 * 114.20751 * 220.34339 * 11 10 9 31 31 H 1.09006 * 114.20432 * 87.52497 * 11 10 9 32 32 H 1.09007 * 109.47127 * 165.49252 * 14 12 9 33 33 H 1.09003 * 109.47675 * 45.49170 * 14 12 9 34 34 H 0.96997 * 119.99779 * 359.97438 * 15 14 12 35 35 H 1.09003 * 109.46941 * 300.00158 * 18 16 15 36 36 H 1.09005 * 109.46926 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.47041 * 60.00295 * 19 18 16 38 38 H 1.09005 * 109.47299 * 60.00037 * 20 19 18 39 39 H 1.09002 * 109.47277 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.47056 * 299.99705 * 21 20 19 41 41 H 1.09002 * 109.47264 * 59.99870 * 22 21 20 42 42 H 1.08994 * 109.47198 * 180.02562 * 25 21 20 43 43 H 1.08994 * 109.46965 * 59.99768 * 25 21 20 44 44 H 1.08994 * 109.47283 * 180.02562 * 26 18 16 45 45 H 1.09002 * 109.47104 * 299.99875 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5043 2.6199 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2022 -0.0005 8 1 3.0872 -1.2040 0.0820 9 7 1.3296 -2.3858 -0.1056 10 6 -0.0820 -2.7981 -0.1166 11 6 0.3668 -4.1565 0.4398 12 6 1.6886 -3.8039 -0.2564 13 1 1.7343 -4.1321 -1.2947 14 6 2.9267 -4.2077 0.5466 15 7 4.1270 -3.6847 -0.1107 16 6 5.3429 -3.9187 0.4216 17 8 5.4433 -4.5617 1.4449 18 6 6.5777 -3.3811 -0.2549 19 6 7.8158 -3.7848 0.5482 20 6 7.7170 -3.2084 1.9619 21 6 7.6335 -1.6827 1.8860 22 6 7.5341 -1.1063 3.2998 23 9 7.4584 0.2889 3.2304 24 9 6.3875 -1.6053 3.9273 25 6 6.3953 -1.2788 1.0830 26 6 6.4945 -1.8552 -0.3304 27 1 -0.4850 0.8400 -0.0004 28 1 -0.7054 -2.2305 0.5744 29 1 -0.5091 -2.8576 -1.1176 30 1 -0.1529 -5.0109 0.0060 31 1 0.4307 -4.1950 1.5273 32 1 2.9863 -5.2948 0.6003 33 1 2.8562 -3.7975 1.5540 34 1 4.0467 -3.1707 -0.9294 35 1 6.6478 -3.7914 -1.2623 36 1 8.7089 -3.3964 0.0586 37 1 7.8752 -4.8718 0.6023 38 1 6.8239 -3.5972 2.4513 39 1 8.5993 -3.4957 2.5339 40 1 8.5266 -1.2939 1.3967 41 1 8.4159 -1.3939 3.8723 42 1 6.3362 -0.1919 1.0285 43 1 5.5023 -1.6676 1.5722 44 1 7.3873 -1.4665 -0.8200 45 1 5.6124 -1.5673 -0.9023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038970808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:46 Heat of formation + Delta-G solvation = -105.631827 kcal Electronic energy + Delta-G solvation = -28572.665345 eV Core-core repulsion = 24454.654217 eV Total energy + Delta-G solvation = -4118.011128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.83809 -46.81319 -40.30278 -38.34756 -37.04717 -34.10571 -32.31976 -32.05983 -30.72311 -28.10402 -27.71004 -25.86871 -23.47078 -22.92238 -22.74796 -21.56797 -20.60237 -19.57744 -18.96181 -17.31338 -17.02732 -16.72257 -16.63471 -16.09997 -15.77859 -15.52761 -15.06894 -14.22826 -14.12258 -14.07372 -13.77724 -13.62004 -13.24945 -13.16468 -13.09296 -12.93820 -12.69298 -12.24692 -12.17981 -11.96641 -11.85415 -11.56743 -11.24530 -11.08902 -11.03796 -10.97551 -10.80430 -10.73695 -10.55167 -10.18714 -10.11153 -9.97100 -9.84517 -9.40156 -9.08519 -8.81843 -8.48755 -6.89151 -5.78930 -3.10430 2.98876 3.37325 3.43771 3.45549 3.59667 3.86146 4.21414 4.41507 4.43392 4.50450 4.73175 4.87084 4.95778 5.17625 5.22232 5.29446 5.31366 5.37705 5.41054 5.44036 5.50372 5.56852 5.68626 5.78042 5.84333 5.91819 5.96457 5.98691 6.11306 6.17809 6.22536 6.32244 6.34803 6.40010 6.52747 6.59824 6.74923 6.95986 7.23482 7.38061 7.57606 7.95151 7.96602 8.62878 9.02100 9.69618 10.63120 11.38960 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.005565 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.638883 B = 5029.823529 C = 6446.378362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.901 3.099 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.214 4.214 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.154 3.846 11 C -0.162 4.162 12 C 0.127 3.873 13 H 0.047 0.953 14 C 0.122 3.878 15 N -0.713 5.713 16 C 0.515 3.485 17 O -0.547 6.547 18 C -0.111 4.111 19 C -0.090 4.090 20 C -0.129 4.129 21 C -0.135 4.135 22 C 0.264 3.736 23 F -0.208 7.208 24 F -0.199 7.199 25 C -0.123 4.123 26 C -0.107 4.107 27 H 0.253 0.747 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.402 0.598 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.393 -7.123 -0.103 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.341 4.341 8 H 0.099 0.901 9 N -0.326 5.326 10 C 0.028 3.972 11 C -0.201 4.201 12 C 0.019 3.981 13 H 0.064 0.936 14 C -0.003 4.003 15 N -0.362 5.362 16 C 0.301 3.699 17 O -0.426 6.426 18 C -0.133 4.133 19 C -0.128 4.128 20 C -0.167 4.167 21 C -0.154 4.154 22 C 0.210 3.790 23 F -0.190 7.190 24 F -0.180 7.180 25 C -0.160 4.160 26 C -0.145 4.145 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.237 0.763 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.444 -7.177 0.678 17.043 hybrid contribution 0.257 1.429 -0.547 1.551 sum 15.701 -5.748 0.131 16.721 Atomic orbital electron populations 1.69840 1.05036 1.25300 1.56114 1.24793 0.95594 0.97383 1.02426 0.86249 0.79125 0.84020 0.77449 1.21675 1.21718 1.20260 1.18857 0.90548 0.81341 1.43334 0.90057 1.45644 1.02517 0.99961 1.84498 1.21967 0.88665 0.89097 0.97435 1.23675 0.97127 0.98918 1.00382 1.22404 0.91974 0.87638 0.96087 0.93582 1.21775 0.83639 0.97192 0.97678 1.46003 1.05918 1.55354 1.28975 1.20459 0.84743 0.79772 0.84880 1.90584 1.86705 1.41063 1.24234 1.21396 0.94069 0.97284 1.00523 1.21219 0.95576 1.01125 0.94846 1.21812 1.04624 0.92024 0.98193 1.22313 1.01298 0.98301 0.93518 1.21952 0.86832 0.74939 0.95294 1.92970 1.97031 1.31668 1.97297 1.93014 1.54024 1.87048 1.83947 1.21581 0.97484 1.01559 0.95413 1.21486 1.03154 0.92607 0.97264 0.93689 0.91423 0.95621 0.92400 0.90251 0.92460 0.91233 0.76348 0.88716 0.91630 0.91043 0.87627 0.92037 0.88779 0.87815 0.90851 0.90330 0.90904 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 11.62 55.49 0.65 -26.28 16 2 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 21.96 29.56 -169.99 -5.02 16.94 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.21 -5.64 10.54 -15.05 -0.16 -5.80 16 8 H 0.08 2.06 7.61 -52.49 -0.40 1.66 16 9 N -0.60 -14.45 3.65 -177.02 -0.65 -15.09 16 10 C 0.15 3.52 7.31 -8.51 -0.06 3.45 16 11 C -0.16 -2.94 8.03 -26.22 -0.21 -3.15 16 12 C 0.13 2.41 4.10 -72.40 -0.30 2.11 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.18 5.52 -4.04 -0.02 2.16 16 15 N -0.71 -11.68 5.22 -60.29 -0.31 -11.99 16 16 C 0.52 8.12 5.64 -10.98 -0.06 8.06 16 17 O -0.55 -10.14 13.66 5.56 0.08 -10.06 16 18 C -0.11 -1.33 3.01 -91.77 -0.28 -1.60 16 19 C -0.09 -0.96 5.09 -26.74 -0.14 -1.10 16 20 C -0.13 -1.53 4.79 -26.74 -0.13 -1.66 16 21 C -0.14 -1.59 2.37 -90.62 -0.21 -1.80 16 22 C 0.26 3.30 4.87 37.16 0.18 3.48 16 23 F -0.21 -3.01 16.82 2.25 0.04 -2.98 16 24 F -0.20 -3.22 16.30 2.25 0.04 -3.18 16 25 C -0.12 -1.78 4.74 -26.75 -0.13 -1.91 16 26 C -0.11 -1.31 5.35 -26.75 -0.14 -1.45 16 27 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.07 1.73 7.31 -51.93 -0.38 1.35 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.45 8.12 -51.93 -0.42 1.02 16 32 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.40 6.34 7.89 -40.82 -0.32 6.01 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.11 1.64 5.17 -51.93 -0.27 1.37 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.12 7.80 -51.93 -0.41 0.71 16 43 H 0.08 1.42 6.87 -51.93 -0.36 1.06 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.01 7.56 -51.93 -0.39 0.62 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -31.88 359.33 -8.68 -40.55 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.15 Total: 6.12 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.75 Total: 0.56 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.32 Total: -53.36 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.07 Total: -6.16 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.88 -8.68 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038970808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.077 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds