Wall clock time and date at job start Tue Mar 31 2020 11:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48493 * 109.47318 * 274.98312 * 3 2 1 5 5 H 1.48497 * 109.46940 * 34.98621 * 3 2 1 6 6 H 1.48505 * 109.46843 * 154.98216 * 3 2 1 7 7 C 1.38817 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00318 * 185.06104 * 7 2 1 9 9 N 1.36947 * 119.99570 * 5.05872 * 7 2 1 10 10 C 1.47056 * 136.05721 * 353.51368 * 9 7 2 11 11 C 1.53499 * 87.98407 * 207.15485 * 10 9 7 12 12 C 1.47063 * 136.05293 * 173.56311 * 9 7 2 13 13 H 1.08993 * 113.46969 * 267.68212 * 12 9 7 14 14 C 1.52995 * 113.46877 * 38.06752 * 12 9 7 15 15 N 1.46506 * 109.47238 * 285.49394 * 14 12 9 16 16 C 1.34779 * 120.00098 * 180.02562 * 15 14 12 17 17 O 1.21279 * 119.99698 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99847 * 179.97438 * 16 15 14 19 19 C 1.52995 * 109.46987 * 179.97438 * 18 16 15 20 20 C 1.52992 * 109.47276 * 299.99871 * 19 18 16 21 21 C 1.52992 * 109.47340 * 300.00198 * 20 19 18 22 22 C 1.53002 * 109.47350 * 179.97438 * 21 20 19 23 23 F 1.39896 * 109.47349 * 179.97438 * 22 21 20 24 24 F 1.39907 * 109.46971 * 299.99949 * 22 21 20 25 25 C 1.53005 * 109.47483 * 60.00080 * 21 20 19 26 26 C 1.53002 * 109.47098 * 59.99727 * 18 16 15 27 27 H 0.96991 * 119.99999 * 0.02562 * 1 2 3 28 28 H 1.09004 * 113.47191 * 321.93581 * 10 9 7 29 29 H 1.08996 * 113.46977 * 92.31679 * 10 9 7 30 30 H 1.09004 * 114.20751 * 220.34339 * 11 10 9 31 31 H 1.09006 * 114.20432 * 87.52497 * 11 10 9 32 32 H 1.09007 * 109.47127 * 165.49252 * 14 12 9 33 33 H 1.09003 * 109.47675 * 45.49170 * 14 12 9 34 34 H 0.96997 * 119.99779 * 359.97438 * 15 14 12 35 35 H 1.09003 * 109.46941 * 300.00158 * 18 16 15 36 36 H 1.09005 * 109.46926 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.47041 * 60.00295 * 19 18 16 38 38 H 1.09005 * 109.47299 * 60.00037 * 20 19 18 39 39 H 1.09002 * 109.47277 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.47056 * 299.99705 * 21 20 19 41 41 H 1.09002 * 109.47264 * 59.99870 * 22 21 20 42 42 H 1.08994 * 109.47198 * 180.02562 * 25 21 20 43 43 H 1.08994 * 109.46965 * 59.99768 * 25 21 20 44 44 H 1.08994 * 109.47283 * 180.02562 * 26 18 16 45 45 H 1.09002 * 109.47104 * 299.99875 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5043 2.6199 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2022 -0.0005 8 1 3.0872 -1.2040 0.0820 9 7 1.3296 -2.3858 -0.1056 10 6 -0.0820 -2.7981 -0.1166 11 6 0.3668 -4.1565 0.4398 12 6 1.6886 -3.8039 -0.2564 13 1 1.7343 -4.1321 -1.2947 14 6 2.9267 -4.2077 0.5466 15 7 4.1270 -3.6847 -0.1107 16 6 5.3429 -3.9187 0.4216 17 8 5.4433 -4.5617 1.4449 18 6 6.5777 -3.3811 -0.2549 19 6 7.8158 -3.7848 0.5482 20 6 7.7170 -3.2084 1.9619 21 6 7.6335 -1.6827 1.8860 22 6 7.5341 -1.1063 3.2998 23 9 7.4584 0.2889 3.2304 24 9 6.3875 -1.6053 3.9273 25 6 6.3953 -1.2788 1.0830 26 6 6.4945 -1.8552 -0.3304 27 1 -0.4850 0.8400 -0.0004 28 1 -0.7054 -2.2305 0.5744 29 1 -0.5091 -2.8576 -1.1176 30 1 -0.1529 -5.0109 0.0060 31 1 0.4307 -4.1950 1.5273 32 1 2.9863 -5.2948 0.6003 33 1 2.8562 -3.7975 1.5540 34 1 4.0467 -3.1707 -0.9294 35 1 6.6478 -3.7914 -1.2623 36 1 8.7089 -3.3964 0.0586 37 1 7.8752 -4.8718 0.6023 38 1 6.8239 -3.5972 2.4513 39 1 8.5993 -3.4957 2.5339 40 1 8.5266 -1.2939 1.3967 41 1 8.4159 -1.3939 3.8723 42 1 6.3362 -0.1919 1.0285 43 1 5.5023 -1.6676 1.5722 44 1 7.3873 -1.4665 -0.8200 45 1 5.6124 -1.5673 -0.9023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038970808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:45 Heat of formation + Delta-G solvation = -125.771158 kcal Electronic energy + Delta-G solvation = -28573.538651 eV Core-core repulsion = 24454.654217 eV Total energy + Delta-G solvation = -4118.884434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.91727 -47.92524 -41.46845 -39.97323 -38.21537 -35.49822 -34.26842 -33.13072 -31.68806 -29.97157 -29.23303 -26.93406 -25.40036 -24.19173 -23.76265 -22.87740 -21.69030 -21.14008 -20.35161 -18.64334 -18.24150 -18.06129 -17.66798 -17.32421 -17.15611 -16.99145 -16.62517 -15.84489 -15.44032 -15.42558 -15.13101 -14.84429 -14.56322 -14.50192 -14.33582 -14.16175 -13.74081 -13.62140 -13.39010 -13.19112 -13.09677 -12.96957 -12.90703 -12.69844 -12.60702 -12.34354 -12.19550 -12.05067 -11.86296 -11.77718 -11.65010 -11.14050 -11.08235 -11.03500 -10.85886 -10.40184 -9.87922 -8.88258 -7.90040 -5.19915 1.40108 1.42810 1.49748 1.77006 2.35033 2.47021 2.93818 3.31912 3.34377 3.43564 3.46688 3.55480 3.76580 3.88663 3.93118 3.99484 4.15813 4.23900 4.34237 4.35711 4.40235 4.43687 4.50251 4.60024 4.65559 4.69027 4.79708 4.88765 4.98400 5.03515 5.05908 5.07770 5.10957 5.22356 5.24902 5.31303 5.34341 5.49152 5.58219 5.67942 5.73833 5.95646 6.68208 6.93312 7.38456 7.63592 8.63955 9.28705 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.005565 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.638883 B = 5029.823529 C = 6446.378362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.958 3.042 4 H -0.282 1.282 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.201 4.201 8 H 0.087 0.913 9 N -0.628 5.628 10 C 0.146 3.854 11 C -0.136 4.136 12 C 0.134 3.866 13 H 0.070 0.930 14 C 0.133 3.867 15 N -0.716 5.716 16 C 0.509 3.491 17 O -0.578 6.578 18 C -0.105 4.105 19 C -0.087 4.087 20 C -0.128 4.128 21 C -0.127 4.127 22 C 0.248 3.752 23 F -0.222 7.222 24 F -0.228 7.228 25 C -0.126 4.126 26 C -0.103 4.103 27 H 0.245 0.755 28 H 0.030 0.970 29 H 0.024 0.976 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.405 0.595 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.150 0.850 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.110 0.890 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.685 -8.409 -1.524 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.788 3.212 4 H -0.209 1.209 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.329 4.329 8 H 0.105 0.895 9 N -0.354 5.354 10 C 0.020 3.980 11 C -0.175 4.175 12 C 0.028 3.972 13 H 0.087 0.913 14 C 0.007 3.993 15 N -0.366 5.366 16 C 0.297 3.703 17 O -0.458 6.458 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.165 4.165 21 C -0.146 4.146 22 C 0.195 3.805 23 F -0.204 7.204 24 F -0.209 7.209 25 C -0.163 4.163 26 C -0.140 4.140 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.240 0.760 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.150 0.850 41 H 0.168 0.832 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.128 0.872 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.765 -8.495 -0.758 20.612 hybrid contribution -0.767 1.748 -0.049 1.910 sum 17.998 -6.747 -0.807 19.238 Atomic orbital electron populations 1.70012 1.06303 1.25145 1.58839 1.25495 0.96327 1.00337 1.03984 0.85335 0.78015 0.80465 0.77396 1.20903 1.23014 1.19548 1.19177 0.90952 0.82405 1.40382 0.89548 1.45952 1.03536 1.01339 1.84585 1.21984 0.87795 0.91423 0.96784 1.23495 0.96139 0.97624 1.00233 1.22545 0.92898 0.84474 0.97320 0.91269 1.21490 0.84163 0.97998 0.95607 1.46027 1.05906 1.55589 1.29060 1.21289 0.85552 0.78984 0.84474 1.90582 1.87188 1.42466 1.25586 1.21488 0.92362 0.96829 1.01879 1.21283 0.96120 1.01098 0.93967 1.21752 1.03806 0.91724 0.99257 1.22341 1.01133 0.98409 0.92697 1.22647 0.87135 0.74090 0.96643 1.92936 1.97087 1.32939 1.97416 1.92958 1.56001 1.87400 1.84571 1.21548 0.97097 1.00478 0.97220 1.21498 1.04262 0.92720 0.95561 0.94621 0.95177 0.95786 0.88168 0.90571 0.90560 0.94932 0.75953 0.85648 0.87800 0.91304 0.91906 0.89329 0.85024 0.83246 0.92362 0.95150 0.87190 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.24 11.62 21.65 0.25 -57.99 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 3 Si 0.96 46.53 29.56 68.60 2.03 48.56 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.20 -10.83 10.54 84.03 0.89 -9.95 16 8 H 0.09 4.46 7.61 -2.91 -0.02 4.44 16 9 N -0.63 -30.61 3.65 -713.97 -2.60 -33.21 16 10 C 0.15 6.76 7.31 83.18 0.61 7.37 16 11 C -0.14 -4.77 8.03 30.93 0.25 -4.53 16 12 C 0.13 4.95 4.10 41.79 0.17 5.12 16 13 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 14 C 0.13 4.70 5.52 86.38 0.48 5.18 16 15 N -0.72 -22.99 5.22 -463.04 -2.42 -25.41 16 16 C 0.51 15.60 5.64 87.66 0.49 16.10 16 17 O -0.58 -21.46 13.66 -3.03 -0.04 -21.50 16 18 C -0.10 -2.18 3.01 -11.54 -0.03 -2.21 16 19 C -0.09 -1.52 5.09 30.59 0.16 -1.36 16 20 C -0.13 -2.70 4.79 30.59 0.15 -2.55 16 21 C -0.13 -2.67 2.37 -10.79 -0.03 -2.70 16 22 C 0.25 5.85 4.87 71.98 0.35 6.20 16 23 F -0.22 -6.25 16.82 44.97 0.76 -5.49 16 24 F -0.23 -7.58 16.30 44.97 0.73 -6.85 16 25 C -0.13 -3.55 4.74 30.58 0.14 -3.40 16 26 C -0.10 -2.23 5.35 30.58 0.16 -2.07 16 27 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.03 1.60 7.31 -2.39 -0.02 1.58 16 29 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 2.72 8.14 -2.38 -0.02 2.71 16 31 H 0.08 2.73 8.12 -2.38 -0.02 2.71 16 32 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.41 12.37 7.89 -92.71 -0.73 11.64 16 35 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.07 1.27 8.10 -2.39 -0.02 1.26 16 38 H 0.06 1.93 5.17 -2.38 -0.01 1.92 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.06 1.77 7.80 -2.39 -0.02 1.75 16 43 H 0.03 1.13 6.87 -2.39 -0.02 1.11 16 44 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 1.53 7.56 -2.39 -0.02 1.51 16 Total: -1.00 -74.68 359.33 3.22 -71.46 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.26 Total: 22.69 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 4.25 Total: 7.74 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -4.77 Total: -116.61 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.04 Total: -21.50 kcal Atomic # 9 Polarization: -13.82 SS G_CDS: 1.49 Total: -12.33 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -74.68 3.22 -71.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038970808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.312 kcal (2) G-P(sol) polarization free energy of solvation -74.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds