Wall clock time and date at job start Tue Mar 31 2020 11:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00057 * 2 1 4 4 H 1.48500 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47146 * 300.00273 * 3 2 1 6 6 H 1.48505 * 109.46966 * 60.00047 * 3 2 1 7 7 C 1.38812 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99620 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49236 * 359.97438 * 9 7 2 11 11 C 1.53944 * 86.11365 * 155.36322 * 10 9 7 12 12 C 1.47582 * 134.49250 * 180.02562 * 9 7 2 13 13 H 1.09003 * 113.87059 * 90.32269 * 12 9 7 14 14 C 1.52997 * 113.76630 * 318.93914 * 12 9 7 15 15 N 1.46499 * 109.47555 * 78.50776 * 14 12 9 16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 14 19 19 C 1.52996 * 109.46842 * 299.72137 * 18 16 15 20 20 C 1.53003 * 109.46915 * 180.02562 * 19 18 16 21 21 C 1.52996 * 109.47301 * 60.00084 * 20 19 18 22 22 C 1.52994 * 109.47118 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47221 * 299.99855 * 22 21 20 24 24 F 1.39901 * 109.47345 * 60.00130 * 22 21 20 25 25 C 1.52997 * 109.46762 * 300.00050 * 21 20 19 26 26 C 1.52994 * 109.47347 * 60.00088 * 25 21 20 27 27 H 0.97002 * 119.99866 * 359.97438 * 1 2 3 28 28 H 1.08999 * 113.76560 * 41.06189 * 10 9 7 29 29 H 1.09000 * 113.77293 * 269.66606 * 10 9 7 30 30 H 1.08998 * 113.74629 * 269.26115 * 11 10 9 31 31 H 1.09005 * 113.83427 * 137.96665 * 11 10 9 32 32 H 1.08998 * 109.47382 * 318.50337 * 14 12 9 33 33 H 1.09002 * 109.47216 * 198.50774 * 14 12 9 34 34 H 0.97000 * 119.99484 * 359.97438 * 15 14 12 35 35 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 36 36 H 1.09002 * 109.47575 * 299.99754 * 19 18 16 37 37 H 1.09001 * 109.47551 * 59.99933 * 19 18 16 38 38 H 1.09000 * 109.46939 * 299.99421 * 20 19 18 39 39 H 1.09004 * 109.47038 * 180.02562 * 20 19 18 40 40 H 1.08994 * 109.46974 * 59.99825 * 21 20 19 41 41 H 1.09001 * 109.47066 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.47498 * 299.99643 * 25 21 20 43 43 H 1.09001 * 109.47245 * 180.02562 * 25 21 20 44 44 H 1.09004 * 109.47131 * 179.97438 * 26 25 21 45 45 H 1.09000 * 109.47504 * 60.00063 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1034 -2.7574 -0.0019 11 6 0.3470 -4.0823 -0.6434 12 6 1.7201 -3.8102 -0.0019 13 1 1.8318 -4.2372 0.9947 14 6 2.9030 -4.1216 -0.9209 15 7 4.1498 -3.7188 -0.2657 16 6 5.3292 -3.8985 -0.8927 17 8 5.3583 -4.3942 -1.9992 18 6 6.6123 -3.4898 -0.2161 19 6 6.5794 -1.9881 0.0748 20 6 7.8823 -1.5730 0.7612 21 6 9.0652 -1.8889 -0.1562 22 6 10.3680 -1.4732 0.5299 23 9 10.3376 -0.1000 0.7955 24 9 10.5080 -2.1774 1.7306 25 6 9.0980 -3.3906 -0.4472 26 6 7.7952 -3.8057 -1.1335 27 1 -0.4850 0.8401 0.0004 28 1 -0.7169 -2.1385 -0.6566 29 1 -0.5273 -2.8738 0.9955 30 1 0.3591 -4.0606 -1.7331 31 1 -0.1585 -4.9605 -0.2414 32 1 2.7906 -3.5736 -1.8563 33 1 2.9305 -5.1915 -1.1278 34 1 4.1264 -3.3220 0.6191 35 1 6.7206 -4.0388 0.7192 36 1 6.4710 -1.4390 -0.8605 37 1 5.7364 -1.7629 0.7281 38 1 7.9911 -2.1219 1.6966 39 1 7.8587 -0.5032 0.9689 40 1 8.9563 -1.3399 -1.0915 41 1 11.2107 -1.6979 -0.1239 42 1 9.2069 -3.9397 0.4882 43 1 9.9410 -3.6158 -1.1004 44 1 7.8188 -4.8755 -1.3412 45 1 7.6863 -3.2568 -2.0689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038970809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:49 Heat of formation + Delta-G solvation = -115.706628 kcal Electronic energy + Delta-G solvation = -27396.619643 eV Core-core repulsion = 23278.171639 eV Total energy + Delta-G solvation = -4118.448004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.16503 -47.13951 -40.03676 -38.26745 -37.50852 -34.09324 -32.37555 -32.09848 -30.94950 -28.15541 -27.78328 -26.11544 -23.38761 -22.95699 -22.82975 -21.71231 -20.35115 -19.79473 -19.05478 -17.52532 -17.30603 -17.26340 -16.77517 -16.36662 -15.73602 -15.36199 -14.97552 -14.49302 -14.36742 -14.17194 -13.90362 -13.68340 -13.55560 -13.46445 -13.20666 -13.04221 -12.88316 -12.42511 -12.36480 -11.93721 -11.83291 -11.50526 -11.40677 -11.28636 -11.12406 -11.03654 -10.82206 -10.76614 -10.54696 -10.51511 -10.31540 -10.00960 -9.76190 -9.59920 -9.25536 -8.82250 -8.57356 -6.91267 -5.78522 -3.10925 2.93965 3.35851 3.40525 3.43962 3.49613 3.61223 3.96398 4.17297 4.21521 4.40764 4.60543 4.74224 4.83941 5.02040 5.09784 5.11678 5.16185 5.19434 5.26543 5.33496 5.38621 5.58696 5.60805 5.67120 5.75105 5.80907 5.84169 5.90424 5.99804 6.03771 6.08429 6.16430 6.26759 6.30899 6.39311 6.60751 6.70679 6.89571 7.23064 7.39521 7.57600 7.89991 7.96472 8.56688 9.02167 9.69228 10.57618 11.38314 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.003837 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.828305 B = 7295.637708 C = 8958.661012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.713 5.713 16 C 0.513 3.487 17 O -0.553 6.553 18 C -0.107 4.107 19 C -0.110 4.110 20 C -0.115 4.115 21 C -0.140 4.140 22 C 0.264 3.736 23 F -0.206 7.206 24 F -0.205 7.205 25 C -0.113 4.113 26 C -0.094 4.094 27 H 0.252 0.748 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.402 0.598 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.191 -7.627 1.131 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.363 5.363 16 C 0.299 3.701 17 O -0.431 6.431 18 C -0.128 4.128 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.159 4.159 22 C 0.211 3.789 23 F -0.188 7.188 24 F -0.187 7.187 25 C -0.151 4.151 26 C -0.132 4.132 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.236 0.764 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.217 -7.606 0.370 18.826 hybrid contribution 0.391 1.325 0.728 1.562 sum 17.608 -6.280 1.098 18.727 Atomic orbital electron populations 1.69825 1.04969 1.25115 1.56715 1.24751 0.95600 0.97375 1.02629 0.86153 0.78801 0.84164 0.77287 1.20445 1.21773 1.21811 1.18976 0.90147 0.81881 1.43532 0.90314 1.46083 1.02282 0.98564 1.85931 1.22196 0.87961 0.89626 0.96868 1.23776 0.96202 0.98955 1.00561 1.22506 0.92392 0.87673 0.95613 0.93390 1.21740 0.82510 0.98599 0.97319 1.46002 1.06136 1.62830 1.21309 1.20528 0.85246 0.78293 0.86004 1.90657 1.87565 1.44919 1.19995 1.21357 0.93245 0.98011 1.00222 1.21513 0.97828 0.93543 1.01931 1.21545 0.93063 1.02395 0.98263 1.22365 0.93612 0.99158 1.00784 1.21996 1.00801 0.73195 0.82958 1.92983 1.97794 1.33042 1.94936 1.92964 1.97074 1.78603 1.50024 1.21558 0.98630 0.93230 1.01665 1.21272 0.91472 1.02337 0.98141 0.93751 0.90828 0.95599 0.90536 0.92845 0.91066 0.92317 0.76368 0.88701 0.90946 0.90357 0.90870 0.90678 0.88007 0.87491 0.90851 0.91110 0.90768 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 11.38 55.49 0.63 -26.09 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -5.72 10.51 -15.06 -0.16 -5.88 16 8 H 0.08 1.98 7.80 -52.48 -0.41 1.57 16 9 N -0.60 -14.41 3.57 -170.76 -0.61 -15.02 16 10 C 0.16 3.60 7.51 -2.98 -0.02 3.58 16 11 C -0.16 -2.82 7.86 -25.79 -0.20 -3.02 16 12 C 0.13 2.37 4.33 -66.85 -0.29 2.08 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.12 2.19 5.54 -4.04 -0.02 2.16 16 15 N -0.71 -11.57 5.42 -60.29 -0.33 -11.90 16 16 C 0.51 8.16 7.15 -10.98 -0.08 8.08 16 17 O -0.55 -10.61 15.98 5.55 0.09 -10.52 16 18 C -0.11 -1.27 2.53 -91.77 -0.23 -1.50 16 19 C -0.11 -1.32 5.10 -26.73 -0.14 -1.46 16 20 C -0.12 -1.18 4.96 -26.73 -0.13 -1.32 16 21 C -0.14 -1.20 2.37 -90.63 -0.21 -1.42 16 22 C 0.26 2.19 4.87 37.15 0.18 2.37 16 23 F -0.21 -2.21 16.82 2.25 0.04 -2.17 16 24 F -0.21 -2.06 16.30 2.25 0.04 -2.02 16 25 C -0.11 -0.91 5.08 -26.74 -0.14 -1.04 16 26 C -0.09 -1.00 4.49 -26.74 -0.12 -1.12 16 27 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.07 1.87 7.15 -51.93 -0.37 1.49 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.40 6.17 7.90 -40.82 -0.32 5.85 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.01 7.57 -51.93 -0.39 0.62 16 38 H 0.07 0.73 7.80 -51.93 -0.41 0.33 16 39 H 0.07 0.82 7.80 -51.93 -0.41 0.42 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.59 7.80 -51.93 -0.41 0.18 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 45 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -31.71 366.03 -8.65 -40.36 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.34 Total: 3.88 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.66 Total: 1.22 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.31 Total: -53.01 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.07 Total: -4.19 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.71 -8.65 -40.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038970809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.351 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds