Wall clock time and date at job start Tue Mar 31 2020 11:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00057 * 2 1 4 4 H 1.48500 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47146 * 300.00273 * 3 2 1 6 6 H 1.48505 * 109.46966 * 60.00047 * 3 2 1 7 7 C 1.38812 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99620 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49236 * 359.97438 * 9 7 2 11 11 C 1.53944 * 86.11365 * 155.36322 * 10 9 7 12 12 C 1.47582 * 134.49250 * 180.02562 * 9 7 2 13 13 H 1.09003 * 113.87059 * 90.32269 * 12 9 7 14 14 C 1.52997 * 113.76630 * 318.93914 * 12 9 7 15 15 N 1.46499 * 109.47555 * 78.50776 * 14 12 9 16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 14 19 19 C 1.52996 * 109.46842 * 299.72137 * 18 16 15 20 20 C 1.53003 * 109.46915 * 180.02562 * 19 18 16 21 21 C 1.52996 * 109.47301 * 60.00084 * 20 19 18 22 22 C 1.52994 * 109.47118 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47221 * 299.99855 * 22 21 20 24 24 F 1.39901 * 109.47345 * 60.00130 * 22 21 20 25 25 C 1.52997 * 109.46762 * 300.00050 * 21 20 19 26 26 C 1.52994 * 109.47347 * 60.00088 * 25 21 20 27 27 H 0.97002 * 119.99866 * 359.97438 * 1 2 3 28 28 H 1.08999 * 113.76560 * 41.06189 * 10 9 7 29 29 H 1.09000 * 113.77293 * 269.66606 * 10 9 7 30 30 H 1.08998 * 113.74629 * 269.26115 * 11 10 9 31 31 H 1.09005 * 113.83427 * 137.96665 * 11 10 9 32 32 H 1.08998 * 109.47382 * 318.50337 * 14 12 9 33 33 H 1.09002 * 109.47216 * 198.50774 * 14 12 9 34 34 H 0.97000 * 119.99484 * 359.97438 * 15 14 12 35 35 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 36 36 H 1.09002 * 109.47575 * 299.99754 * 19 18 16 37 37 H 1.09001 * 109.47551 * 59.99933 * 19 18 16 38 38 H 1.09000 * 109.46939 * 299.99421 * 20 19 18 39 39 H 1.09004 * 109.47038 * 180.02562 * 20 19 18 40 40 H 1.08994 * 109.46974 * 59.99825 * 21 20 19 41 41 H 1.09001 * 109.47066 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.47498 * 299.99643 * 25 21 20 43 43 H 1.09001 * 109.47245 * 180.02562 * 25 21 20 44 44 H 1.09004 * 109.47131 * 179.97438 * 26 25 21 45 45 H 1.09000 * 109.47504 * 60.00063 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1034 -2.7574 -0.0019 11 6 0.3470 -4.0823 -0.6434 12 6 1.7201 -3.8102 -0.0019 13 1 1.8318 -4.2372 0.9947 14 6 2.9030 -4.1216 -0.9209 15 7 4.1498 -3.7188 -0.2657 16 6 5.3292 -3.8985 -0.8927 17 8 5.3583 -4.3942 -1.9992 18 6 6.6123 -3.4898 -0.2161 19 6 6.5794 -1.9881 0.0748 20 6 7.8823 -1.5730 0.7612 21 6 9.0652 -1.8889 -0.1562 22 6 10.3680 -1.4732 0.5299 23 9 10.3376 -0.1000 0.7955 24 9 10.5080 -2.1774 1.7306 25 6 9.0980 -3.3906 -0.4472 26 6 7.7952 -3.8057 -1.1335 27 1 -0.4850 0.8401 0.0004 28 1 -0.7169 -2.1385 -0.6566 29 1 -0.5273 -2.8738 0.9955 30 1 0.3591 -4.0606 -1.7331 31 1 -0.1585 -4.9605 -0.2414 32 1 2.7906 -3.5736 -1.8563 33 1 2.9305 -5.1915 -1.1278 34 1 4.1264 -3.3220 0.6191 35 1 6.7206 -4.0388 0.7192 36 1 6.4710 -1.4390 -0.8605 37 1 5.7364 -1.7629 0.7281 38 1 7.9911 -2.1219 1.6966 39 1 7.8587 -0.5032 0.9689 40 1 8.9563 -1.3399 -1.0915 41 1 11.2107 -1.6979 -0.1239 42 1 9.2069 -3.9397 0.4882 43 1 9.9410 -3.6158 -1.1004 44 1 7.8188 -4.8755 -1.3412 45 1 7.6863 -3.2568 -2.0689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038970809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:49 Heat of formation + Delta-G solvation = -134.790047 kcal Electronic energy + Delta-G solvation = -27397.447162 eV Core-core repulsion = 23278.171639 eV Total energy + Delta-G solvation = -4119.275523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.85824 -47.84961 -41.22737 -39.76338 -38.65498 -35.52151 -34.20971 -33.15002 -31.78280 -29.91503 -29.32500 -27.01866 -25.28929 -24.09688 -23.79423 -22.91325 -21.41386 -20.93457 -20.58225 -18.79789 -18.18886 -18.00977 -17.95083 -17.46147 -17.08969 -17.01550 -16.31807 -15.81727 -15.63665 -15.32057 -15.20244 -14.85486 -14.70507 -14.47609 -14.27359 -14.13622 -13.76933 -13.61536 -13.33692 -13.23712 -13.17189 -12.97888 -12.71993 -12.68357 -12.58015 -12.29508 -12.26308 -12.12543 -11.84178 -11.59405 -11.51018 -11.39186 -11.26712 -11.12869 -10.84462 -10.60298 -9.98124 -8.87670 -7.86328 -5.17530 1.42632 1.43950 1.52188 1.66982 2.27681 2.47690 2.92545 3.32657 3.37601 3.40667 3.45665 3.52940 3.73800 3.86898 3.91077 4.01369 4.14818 4.26538 4.31847 4.35719 4.36079 4.42320 4.45065 4.51226 4.64462 4.71652 4.77339 4.86186 4.90733 5.02776 5.06037 5.08545 5.11083 5.15379 5.19466 5.27806 5.35136 5.42583 5.51152 5.62739 5.75572 5.98828 6.60567 6.96442 7.28260 7.66566 8.61172 9.30908 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.003837 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.828305 B = 7295.637708 C = 8958.661012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.300 1.300 6 H -0.295 1.295 7 C -0.208 4.208 8 H 0.087 0.913 9 N -0.629 5.629 10 C 0.150 3.850 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.071 0.929 14 C 0.132 3.868 15 N -0.713 5.713 16 C 0.510 3.490 17 O -0.587 6.587 18 C -0.098 4.098 19 C -0.106 4.106 20 C -0.112 4.112 21 C -0.139 4.139 22 C 0.261 3.739 23 F -0.222 7.222 24 F -0.215 7.215 25 C -0.104 4.104 26 C -0.092 4.092 27 H 0.244 0.756 28 H 0.038 0.962 29 H 0.022 0.978 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.407 0.593 35 H 0.118 0.882 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.147 0.853 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.658 -9.158 1.679 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.228 1.228 6 H -0.223 1.223 7 C -0.336 4.336 8 H 0.104 0.896 9 N -0.355 5.355 10 C 0.024 3.976 11 C -0.170 4.170 12 C 0.027 3.973 13 H 0.089 0.911 14 C 0.007 3.993 15 N -0.363 5.363 16 C 0.298 3.702 17 O -0.468 6.468 18 C -0.119 4.119 19 C -0.144 4.144 20 C -0.150 4.150 21 C -0.158 4.158 22 C 0.208 3.792 23 F -0.204 7.204 24 F -0.197 7.197 25 C -0.141 4.141 26 C -0.130 4.130 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.242 0.758 35 H 0.136 0.864 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.164 0.836 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.717 -9.168 0.937 21.765 hybrid contribution -0.400 1.720 0.543 1.847 sum 19.317 -7.448 1.480 20.757 Atomic orbital electron populations 1.70003 1.06276 1.24982 1.59231 1.25470 0.96347 1.00361 1.04115 0.85248 0.78638 0.80652 0.76359 1.18649 1.22815 1.22269 1.19341 0.90722 0.82957 1.40628 0.89551 1.46433 1.03225 1.00005 1.85874 1.22163 0.87191 0.91812 0.96413 1.23570 0.95258 0.97808 1.00376 1.22670 0.93276 0.84592 0.96773 0.91148 1.21503 0.82939 0.99210 0.95637 1.46016 1.05948 1.62829 1.21476 1.21240 0.86158 0.77240 0.85567 1.90640 1.88101 1.46498 1.21589 1.21387 0.91493 0.97957 1.01090 1.21447 0.98597 0.93431 1.00970 1.21496 0.92870 1.01856 0.98762 1.22356 0.93142 0.99750 1.00524 1.22355 1.01838 0.72143 0.82867 1.92953 1.97895 1.34475 1.95059 1.92945 1.97134 1.78726 1.50872 1.21506 0.97820 0.92563 1.02206 1.21250 0.92245 1.02009 0.97449 0.94695 0.94393 0.96012 0.90512 0.88817 0.94297 0.90347 0.75762 0.86380 0.92687 0.91516 0.90301 0.91603 0.87657 0.83584 0.90159 0.88606 0.90980 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.30 11.38 21.65 0.25 -57.06 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.96 45.56 29.55 68.60 2.03 47.59 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 7 C -0.21 -10.97 10.51 84.03 0.88 -10.08 16 8 H 0.09 4.30 7.80 -2.91 -0.02 4.28 16 9 N -0.63 -29.98 3.57 -694.15 -2.48 -32.47 16 10 C 0.15 6.83 7.51 86.48 0.65 7.48 16 11 C -0.13 -4.50 7.86 31.26 0.25 -4.25 16 12 C 0.13 4.77 4.33 45.10 0.20 4.96 16 13 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 14 C 0.13 4.52 5.54 86.38 0.48 5.00 16 15 N -0.71 -22.23 5.42 -463.06 -2.51 -24.74 16 16 C 0.51 15.67 7.15 87.66 0.63 16.29 16 17 O -0.59 -22.20 15.98 -3.04 -0.05 -22.25 16 18 C -0.10 -2.17 2.53 -11.54 -0.03 -2.19 16 19 C -0.11 -2.44 5.10 30.59 0.16 -2.28 16 20 C -0.11 -2.12 4.96 30.59 0.15 -1.97 16 21 C -0.14 -2.02 2.37 -10.80 -0.03 -2.05 16 22 C 0.26 3.55 4.87 71.98 0.35 3.90 16 23 F -0.22 -4.32 16.82 44.97 0.76 -3.57 16 24 F -0.22 -3.72 16.30 44.97 0.73 -2.99 16 25 C -0.10 -1.32 5.08 30.59 0.16 -1.17 16 26 C -0.09 -1.76 4.49 30.59 0.14 -1.62 16 27 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.04 1.99 7.15 -2.39 -0.02 1.97 16 29 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16 31 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.41 11.88 7.90 -92.71 -0.73 11.14 16 35 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.66 7.57 -2.39 -0.02 1.65 16 38 H 0.08 1.40 7.80 -2.39 -0.02 1.39 16 39 H 0.07 1.37 7.80 -2.38 -0.02 1.35 16 40 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.97 7.80 -2.39 -0.02 0.96 16 43 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.07 1.44 8.10 -2.38 -0.02 1.42 16 45 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -70.38 366.03 3.42 -66.97 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.25 Total: 19.98 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 4.44 Total: 8.53 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.75 Total: -114.26 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.05 Total: -22.25 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 1.49 Total: -6.56 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -70.38 3.42 -66.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038970809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.823 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds