Wall clock time and date at job start Tue Mar 31 2020 12:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39902 * 109.46947 * 2 1 4 4 F 1.39896 * 109.47556 * 239.99647 * 2 1 3 5 5 C 1.50702 * 109.47418 * 119.99602 * 2 1 3 6 6 O 1.21279 * 119.99680 * 344.46882 * 5 2 1 7 7 N 1.34779 * 120.00453 * 164.46931 * 5 2 1 8 8 C 1.46924 * 120.63108 * 176.44988 * 7 5 2 9 9 C 1.53196 * 108.77360 * 233.58550 * 8 7 5 10 10 C 1.53033 * 109.31132 * 305.36670 * 9 8 7 11 11 C 1.53002 * 109.45836 * 181.38605 * 10 9 8 12 12 H 1.08993 * 110.88818 * 300.69977 * 11 10 9 13 13 C 1.55158 * 111.03483 * 176.79258 * 11 10 9 14 14 C 1.54331 * 102.94339 * 206.40883 * 13 11 10 15 15 N 1.47024 * 107.26551 * 22.19542 * 14 13 11 16 16 C 1.36939 * 125.64366 * 181.02240 * 15 14 13 17 17 H 1.07999 * 120.00045 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00019 * 0.04216 * 16 15 14 19 19 N 1.31614 * 120.00062 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99856 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47121 * 59.99971 * 20 18 16 22 22 H 1.48498 * 109.47064 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47151 * 300.00413 * 20 18 16 24 24 C 1.47418 * 108.70777 * 1.06150 * 15 14 13 25 25 C 1.53038 * 109.54199 * 61.36533 * 10 9 8 26 26 C 1.46923 * 120.62783 * 356.42762 * 7 5 2 27 27 H 1.08994 * 109.47178 * 300.00173 * 1 2 3 28 28 H 1.08998 * 109.47066 * 60.00527 * 1 2 3 29 29 H 1.09002 * 109.46789 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.58632 * 113.79874 * 8 7 5 31 31 H 1.09000 * 109.58881 * 353.37278 * 8 7 5 32 32 H 1.08996 * 109.49342 * 185.41470 * 9 8 7 33 33 H 1.08997 * 109.52275 * 65.33642 * 9 8 7 34 34 H 1.09006 * 109.46337 * 301.35755 * 10 9 8 35 35 H 1.08993 * 110.72455 * 324.77416 * 13 11 10 36 36 H 1.09004 * 110.71816 * 88.04989 * 13 11 10 37 37 H 1.08999 * 109.88001 * 262.78198 * 14 13 11 38 38 H 1.09002 * 110.00881 * 141.68555 * 14 13 11 39 39 H 0.97001 * 120.00011 * 179.97438 * 19 18 16 40 40 H 1.08999 * 110.36719 * 217.03769 * 24 15 14 41 41 H 1.08998 * 110.46179 * 94.75140 * 24 15 14 42 42 H 1.08998 * 109.49742 * 58.58313 * 25 10 9 43 43 H 1.09000 * 109.50072 * 178.68509 * 25 10 9 44 44 H 1.08998 * 109.58665 * 246.20267 * 26 7 5 45 45 H 1.09002 * 109.58809 * 6.62684 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0324 -0.7103 1.2305 6 8 1.2804 -0.9212 2.1584 7 7 3.3173 -1.1112 1.2999 8 6 3.8418 -1.7351 2.5223 9 6 5.0959 -0.9746 2.9649 10 6 6.0939 -0.9262 1.8059 11 6 7.3619 -0.1973 2.2551 12 1 7.1329 0.8186 2.5766 13 6 8.4320 -0.1973 1.1316 14 6 9.7565 -0.0850 1.9158 15 7 9.4961 -0.5604 3.2825 16 6 10.4112 -0.6033 4.3003 17 1 10.1202 -0.9718 5.2729 18 6 11.7128 -0.1730 4.0821 19 7 12.0673 0.2768 2.8971 20 14 12.9609 -0.2309 5.4708 21 1 13.1195 -1.6324 5.9355 22 1 14.2672 0.2805 4.9839 23 1 12.4878 0.6134 6.5970 24 6 8.0872 -0.9840 3.3753 25 6 5.4696 -0.1816 0.6235 26 6 4.2199 -0.9331 0.1544 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0974 -2.7753 2.3209 31 1 3.0889 -1.6874 3.3090 32 1 5.5496 -1.4846 3.8147 33 1 4.8234 0.0407 3.2531 34 1 6.3473 -1.9420 1.5021 35 1 8.3968 -1.1279 0.5654 36 1 8.2997 0.6613 0.4731 37 1 10.0853 0.9539 1.9410 38 1 10.5211 -0.7045 1.4470 39 1 12.9767 0.5779 2.7447 40 1 7.6758 -0.7221 4.3501 41 1 7.9997 -2.0568 3.2032 42 1 5.1932 0.8262 0.9333 43 1 6.1894 -0.1272 -0.1932 44 1 4.5063 -1.9079 -0.2402 45 1 3.7163 -0.3562 -0.6214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039102514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:28 Heat of formation + Delta-G solvation = -110.991970 kcal Electronic energy + Delta-G solvation = -27700.159988 eV Core-core repulsion = 23581.916428 eV Total energy + Delta-G solvation = -4118.243561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.73029 -47.61800 -40.44377 -38.61528 -36.81896 -33.85305 -32.13618 -31.76508 -31.30720 -29.20001 -27.96425 -25.86106 -24.89929 -23.48077 -23.15268 -21.22669 -19.98249 -19.84676 -19.52411 -18.32794 -18.20573 -17.26123 -16.80806 -16.18276 -15.35765 -15.11743 -14.95229 -14.69651 -14.45087 -14.15028 -13.94390 -13.91744 -13.84863 -13.67645 -13.24764 -13.02560 -12.87809 -12.83849 -12.43594 -12.25213 -12.18179 -12.00760 -11.73896 -11.38028 -11.06668 -11.05735 -10.85780 -10.72386 -10.57892 -10.24810 -10.11219 -9.83357 -9.79078 -9.71413 -9.57549 -8.99118 -8.56930 -6.79134 -5.68294 -3.01391 1.78859 2.23897 3.22482 3.41722 3.45807 3.47153 3.47388 3.92325 4.13306 4.51282 4.59761 4.73713 4.76589 4.91417 4.98744 5.11633 5.11969 5.23799 5.35820 5.43258 5.49225 5.51879 5.57417 5.61669 5.66031 5.77808 5.87908 5.95663 5.98010 6.04620 6.15585 6.31480 6.33150 6.45137 6.58581 6.62159 6.77732 6.85096 7.01889 7.42478 7.59190 7.67425 7.86076 8.30054 9.25649 9.86401 10.53097 11.43375 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.034646 B = 0.002683 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.984508 B =10433.909804 C =10853.820271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.281 3.719 3 F -0.181 7.181 4 F -0.184 7.184 5 C 0.485 3.515 6 O -0.511 6.511 7 N -0.587 5.587 8 C 0.109 3.891 9 C -0.129 4.129 10 C -0.075 4.075 11 C -0.096 4.096 12 H 0.072 0.928 13 C -0.138 4.138 14 C 0.177 3.823 15 N -0.607 5.607 16 C -0.228 4.228 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.143 3.857 25 C -0.129 4.129 26 C 0.084 3.916 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.252 0.748 40 H 0.035 0.965 41 H 0.016 0.984 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.299 -1.928 -8.795 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.241 3.759 3 F -0.162 7.162 4 F -0.165 7.165 5 C 0.268 3.732 6 O -0.386 6.386 7 N -0.319 5.319 8 C -0.013 4.013 9 C -0.167 4.167 10 C -0.094 4.094 11 C -0.116 4.116 12 H 0.090 0.910 13 C -0.176 4.176 14 C 0.052 3.948 15 N -0.333 5.333 16 C -0.356 4.356 17 H 0.094 0.906 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.016 3.984 25 C -0.167 4.167 26 C -0.037 4.037 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.034 0.966 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.409 -1.979 -8.284 23.973 hybrid contribution 1.030 0.104 0.488 1.145 sum -21.379 -1.875 -7.796 22.833 Atomic orbital electron populations 1.22608 0.88742 1.06379 1.06044 1.21391 0.95832 0.76277 0.82386 1.93105 1.90479 1.36023 1.96545 1.92978 1.89638 1.80815 1.53057 1.20717 0.83157 0.80799 0.88577 1.90760 1.55006 1.55323 1.37546 1.48234 1.09102 1.58121 1.16414 1.21837 0.96790 0.96562 0.86064 1.22003 0.94384 1.01281 0.99080 1.21119 0.94477 0.99701 0.94082 1.22348 0.92762 0.99177 0.97274 0.91003 1.22901 0.97549 1.00053 0.97127 1.21130 0.90909 0.99182 0.83561 1.44483 1.05342 1.74788 1.08712 1.19017 0.89762 1.36422 0.90413 0.90603 1.24799 0.97336 1.01387 0.97039 1.69961 1.18017 1.48529 1.20559 0.86207 0.80765 0.77686 0.81158 1.21204 1.21617 1.21209 1.21548 0.86010 0.95287 0.95524 1.21995 0.95912 0.99492 0.99314 1.22398 0.91493 1.02121 0.87731 0.88141 0.89154 0.88724 0.90710 0.88872 0.89727 0.91405 0.90871 0.92638 0.92473 0.93842 0.94185 0.93775 0.94709 0.96628 0.91351 0.89837 0.90337 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 8.80 37.16 0.33 -0.92 16 2 C 0.28 2.66 1.79 -27.88 -0.05 2.61 16 3 F -0.18 -1.91 16.81 2.25 0.04 -1.87 16 4 F -0.18 -1.69 14.11 2.25 0.03 -1.66 16 5 C 0.49 5.59 7.19 -10.98 -0.08 5.51 16 6 O -0.51 -6.97 15.42 5.56 0.09 -6.88 16 7 N -0.59 -6.40 2.97 -172.77 -0.51 -6.92 16 8 C 0.11 1.16 6.42 -3.71 -0.02 1.13 16 9 C -0.13 -1.50 5.21 -26.61 -0.14 -1.64 16 10 C -0.07 -0.93 1.65 -90.58 -0.15 -1.08 16 11 C -0.10 -1.58 2.56 -88.47 -0.23 -1.81 16 12 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.14 -2.48 5.42 -24.89 -0.14 -2.61 16 14 C 0.18 4.31 5.38 -3.06 -0.02 4.29 16 15 N -0.61 -15.61 3.39 -170.07 -0.58 -16.19 16 16 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.43 10.31 55.49 0.57 -26.86 16 20 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.14 2.88 5.80 -2.53 -0.01 2.86 16 25 C -0.13 -1.41 5.20 -26.61 -0.14 -1.54 16 26 C 0.08 0.82 5.84 -3.71 -0.02 0.80 16 27 H 0.10 0.71 7.93 -51.93 -0.41 0.29 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.04 7.03 -51.93 -0.36 0.67 16 32 H 0.08 0.99 7.32 -51.93 -0.38 0.61 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 35 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 36 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.04 1.18 7.38 -51.93 -0.38 0.79 16 38 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 39 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.03 0.69 8.02 -51.93 -0.42 0.27 16 41 H 0.02 0.32 8.03 -51.93 -0.42 -0.10 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.88 7.32 -51.93 -0.38 0.50 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.92 4.62 -51.93 -0.24 0.68 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -31.81 353.46 -8.13 -39.93 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -7.15 Total: -2.82 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.92 Total: 0.65 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.52 Total: -49.96 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: 0.09 Total: -6.88 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.07 Total: -3.53 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.81 -8.13 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039102514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.058 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds