Wall clock time and date at job start Tue Mar 31 2020 12:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39901 * 109.46832 * 2 1 4 4 F 1.39903 * 109.47670 * 239.99939 * 2 1 3 5 5 C 1.50704 * 109.47158 * 119.99697 * 2 1 3 6 6 O 1.21282 * 119.99822 * 22.51879 * 5 2 1 7 7 N 1.34775 * 119.99919 * 202.51295 * 5 2 1 8 8 C 1.46926 * 120.63185 * 355.19370 * 7 5 2 9 9 C 1.53196 * 108.77641 * 233.62735 * 8 7 5 10 10 C 1.53038 * 109.30953 * 305.36826 * 9 8 7 11 11 C 1.53005 * 109.45715 * 181.38414 * 10 9 8 12 12 H 1.09000 * 110.64270 * 296.85556 * 11 10 9 13 13 C 1.55154 * 110.72045 * 59.99784 * 11 10 9 14 14 C 1.54910 * 101.58391 * 154.04612 * 13 11 10 15 15 N 1.47431 * 104.82840 * 322.98996 * 14 13 11 16 16 C 1.36933 * 125.64524 * 204.09744 * 15 14 13 17 17 H 1.08001 * 119.99987 * 168.02418 * 16 15 14 18 18 C 1.38813 * 120.00194 * 348.01672 * 16 15 14 19 19 N 1.31620 * 119.99805 * 323.30008 * 18 16 15 20 20 Si 1.86798 * 119.99887 * 143.30413 * 18 16 15 21 21 H 1.48498 * 109.47321 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47151 * 120.00225 * 20 18 16 23 23 H 1.48499 * 109.47264 * 239.99993 * 20 18 16 24 24 C 1.47024 * 108.70158 * 24.35519 * 15 14 13 25 25 C 1.53042 * 109.54122 * 61.36550 * 10 9 8 26 26 C 1.46923 * 120.62893 * 175.21186 * 7 5 2 27 27 H 1.08993 * 109.47559 * 299.99844 * 1 2 3 28 28 H 1.09004 * 109.47193 * 60.00660 * 1 2 3 29 29 H 1.09009 * 109.46871 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.58817 * 113.84182 * 8 7 5 31 31 H 1.09002 * 109.58433 * 353.41587 * 8 7 5 32 32 H 1.08999 * 109.50001 * 185.41332 * 9 8 7 33 33 H 1.09007 * 109.52114 * 65.32982 * 9 8 7 34 34 H 1.09002 * 109.46068 * 301.34942 * 10 9 8 35 35 H 1.08998 * 111.00573 * 35.96658 * 13 11 10 36 36 H 1.09010 * 111.00567 * 272.11709 * 13 11 10 37 37 H 1.08999 * 110.36629 * 204.15142 * 14 13 11 38 38 H 1.08996 * 110.46321 * 81.87249 * 14 13 11 39 39 H 0.96992 * 120.00033 * 354.47586 * 19 18 16 40 40 H 1.09000 * 109.87930 * 118.13181 * 24 15 14 41 41 H 1.08997 * 109.87906 * 239.29348 * 24 15 14 42 42 H 1.08989 * 109.49606 * 58.58443 * 25 10 9 43 43 H 1.09002 * 109.49259 * 178.68245 * 25 10 9 44 44 H 1.08996 * 109.59081 * 246.15731 * 26 7 5 45 45 H 1.09001 * 109.58866 * 6.58535 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 8 1.3197 -1.5063 1.8046 7 7 3.2735 -0.4612 1.6929 8 6 4.1861 0.4192 0.9509 9 6 5.5024 -0.3262 0.7088 10 6 6.0565 -0.8222 2.0463 11 6 7.3887 -1.5374 1.8124 12 1 7.2460 -2.4226 1.1926 13 6 8.4218 -0.5763 1.1672 14 6 9.7608 -1.2005 1.6334 15 7 9.4984 -1.6759 3.0041 16 6 10.4430 -1.8670 3.9769 17 1 10.1388 -2.0305 5.0002 18 6 11.7914 -1.8508 3.6478 19 7 12.1958 -2.3612 2.5040 20 14 13.0320 -1.1048 4.8284 21 1 12.3272 -0.6037 6.0356 22 1 14.0205 -2.1391 5.2265 23 1 13.7347 0.0209 4.1619 24 6 8.0555 -1.9166 3.1515 25 6 5.0611 -1.7942 2.6839 26 6 3.7399 -1.0653 2.9484 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0278 -0.0005 30 1 4.3784 1.3205 1.5331 31 1 3.7373 0.6883 -0.0054 32 1 6.2221 0.3478 0.2442 33 1 5.3236 -1.1770 0.0511 34 1 6.2122 0.0267 2.7121 35 1 8.3075 0.4365 1.5533 36 1 8.3422 -0.5897 0.0801 37 1 10.5492 -0.4478 1.6373 38 1 10.0370 -2.0349 0.9889 39 1 11.5649 -2.8197 1.9274 40 1 7.8760 -2.9688 3.3725 41 1 7.6558 -1.2941 3.9520 42 1 4.8860 -2.6310 2.0079 43 1 5.4668 -2.1650 3.6252 44 1 3.8957 -0.2853 3.6935 45 1 2.9967 -1.7759 3.3102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039102517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:31 Heat of formation + Delta-G solvation = -114.888751 kcal Electronic energy + Delta-G solvation = -27722.528165 eV Core-core repulsion = 23604.115627 eV Total energy + Delta-G solvation = -4118.412538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.75433 -47.65050 -40.50185 -38.74270 -36.97173 -34.02234 -32.22766 -31.86712 -31.37485 -29.16999 -28.18135 -25.87685 -24.80307 -23.44774 -23.23569 -21.29076 -20.12859 -20.01479 -19.56355 -18.36857 -18.21659 -17.42506 -17.26915 -16.24765 -15.45794 -15.17513 -15.00261 -14.73524 -14.53986 -14.05555 -13.98271 -13.95113 -13.72812 -13.67885 -13.26316 -13.19997 -13.02683 -12.99161 -12.91949 -12.43235 -12.27640 -12.15797 -11.67859 -11.47072 -11.26184 -11.17505 -10.74669 -10.61130 -10.41853 -10.32050 -10.10197 -10.04276 -9.97232 -9.89491 -9.63307 -9.05778 -8.26534 -6.92921 -6.16254 -3.04046 1.75239 2.18990 3.18627 3.43771 3.54067 3.56151 3.70992 3.88811 4.08962 4.52651 4.58358 4.66876 4.70608 4.85452 4.94177 5.05699 5.07276 5.15397 5.23854 5.28284 5.39078 5.40893 5.45533 5.51794 5.54352 5.67421 5.76971 5.84248 5.85875 5.96932 6.00695 6.15270 6.23483 6.29413 6.40534 6.47824 6.66293 6.79811 6.88186 7.01640 7.08444 7.38476 7.84584 8.51487 9.03393 9.85039 10.43114 11.19094 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.034772 B = 0.002688 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.055788 B =10412.530892 C =10706.043620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.281 3.719 3 F -0.184 7.184 4 F -0.181 7.181 5 C 0.485 3.515 6 O -0.510 6.510 7 N -0.588 5.588 8 C 0.089 3.911 9 C -0.130 4.130 10 C -0.074 4.074 11 C -0.093 4.093 12 H 0.069 0.931 13 C -0.129 4.129 14 C 0.144 3.856 15 N -0.603 5.603 16 C -0.346 4.346 17 H 0.066 0.934 18 C -0.022 4.022 19 N -0.905 5.905 20 Si 1.057 2.943 21 H -0.292 1.292 22 H -0.296 1.296 23 H -0.290 1.290 24 C 0.143 3.857 25 C -0.130 4.130 26 C 0.109 3.891 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.020 0.980 39 H 0.268 0.732 40 H 0.018 0.982 41 H 0.024 0.976 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.142 7.259 -6.178 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.241 3.759 3 F -0.165 7.165 4 F -0.162 7.162 5 C 0.268 3.732 6 O -0.385 6.385 7 N -0.320 5.320 8 C -0.033 4.033 9 C -0.168 4.168 10 C -0.093 4.093 11 C -0.112 4.112 12 H 0.088 0.912 13 C -0.167 4.167 14 C 0.018 3.982 15 N -0.330 5.330 16 C -0.473 4.473 17 H 0.083 0.917 18 C -0.224 4.224 19 N -0.544 5.544 20 Si 0.886 3.114 21 H -0.218 1.218 22 H -0.223 1.223 23 H -0.217 1.217 24 C 0.017 3.983 25 C -0.168 4.168 26 C -0.013 4.013 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.814 7.215 -5.584 23.645 hybrid contribution -1.321 -0.392 -0.347 1.421 sum -23.135 6.823 -5.932 24.838 Atomic orbital electron populations 1.22622 0.88701 1.06823 1.05703 1.21368 0.95872 0.75609 0.83026 1.93002 1.89777 1.37097 1.96664 1.93102 1.90466 1.80731 1.51913 1.20727 0.82842 0.83664 0.85981 1.90764 1.55948 1.33838 1.57978 1.48226 1.12392 1.46977 1.24408 1.22334 0.90602 0.92782 0.97577 1.22011 0.95566 1.00859 0.98327 1.21144 0.94131 0.98067 0.95995 1.22169 0.92999 0.98006 0.98073 0.91231 1.22836 0.96614 0.98517 0.98731 1.21470 0.94006 0.96093 0.86614 1.44630 1.01491 1.76610 1.10229 1.19677 0.87694 1.51726 0.88177 0.91663 1.25615 0.95865 0.99852 1.01087 1.70729 1.36893 1.32237 1.14571 0.83692 0.75564 0.76964 0.75139 1.21819 1.22329 1.21669 1.21307 0.86038 0.96994 0.93946 1.21997 0.93822 0.98491 1.02444 1.21830 0.97079 0.98140 0.84210 0.88772 0.89081 0.88043 0.90293 0.88586 0.89789 0.91381 0.90651 0.91728 0.92099 0.93314 0.96187 0.92109 0.96427 0.95767 0.91417 0.89758 0.90631 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 8.88 37.16 0.33 -0.88 16 2 C 0.28 2.61 1.80 -27.88 -0.05 2.56 16 3 F -0.18 -1.66 14.04 2.25 0.03 -1.63 16 4 F -0.18 -1.87 16.79 2.25 0.04 -1.84 16 5 C 0.49 5.52 7.15 -10.98 -0.08 5.44 16 6 O -0.51 -6.93 15.48 5.56 0.09 -6.85 16 7 N -0.59 -6.32 2.97 -172.77 -0.51 -6.83 16 8 C 0.09 0.85 5.61 -3.71 -0.02 0.83 16 9 C -0.13 -1.37 5.16 -26.61 -0.14 -1.51 16 10 C -0.07 -0.92 1.56 -90.58 -0.14 -1.06 16 11 C -0.09 -1.50 2.47 -88.78 -0.22 -1.72 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.13 -2.21 5.37 -24.58 -0.13 -2.34 16 14 C 0.14 3.34 5.41 -2.53 -0.01 3.32 16 15 N -0.60 -15.39 3.32 -170.07 -0.57 -15.96 16 16 C -0.35 -9.91 9.93 -15.06 -0.15 -10.06 16 17 H 0.07 1.88 8.04 -52.49 -0.42 1.46 16 18 C -0.02 -0.63 4.90 -17.43 -0.09 -0.71 16 19 N -0.90 -27.58 12.92 55.49 0.72 -26.87 16 20 Si 1.06 25.62 30.04 -169.99 -5.11 20.51 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.14 2.93 5.99 -3.06 -0.02 2.91 16 25 C -0.13 -1.50 5.23 -26.61 -0.14 -1.63 16 26 C 0.11 1.15 6.44 -3.71 -0.02 1.12 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.70 7.88 -51.92 -0.41 0.29 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.87 4.84 -51.93 -0.25 0.62 16 32 H 0.08 0.85 7.19 -51.93 -0.37 0.47 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 36 H 0.06 0.91 8.08 -51.92 -0.42 0.49 16 37 H 0.05 1.24 7.89 -51.93 -0.41 0.83 16 38 H 0.02 0.50 7.11 -51.93 -0.37 0.13 16 39 H 0.27 8.25 6.71 -40.82 -0.27 7.97 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.49 7.77 -51.93 -0.40 0.09 16 42 H 0.07 0.82 8.14 -51.94 -0.42 0.40 16 43 H 0.08 1.00 7.45 -51.93 -0.39 0.61 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.09 1.04 7.00 -51.93 -0.36 0.68 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -32.55 354.00 -7.96 -40.51 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -7.10 Total: -2.66 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.88 Total: -3.73 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.36 Total: -49.66 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: 0.09 Total: -6.85 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.07 Total: -3.47 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.11 Total: 20.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.55 -7.96 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039102517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.381 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds