Wall clock time and date at job start Tue Mar 31 2020 12:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39898 * 109.47194 * 2 1 4 4 F 1.39896 * 109.47420 * 239.99885 * 2 1 3 5 5 C 1.50700 * 109.46994 * 119.99575 * 2 1 3 6 6 O 1.21279 * 120.00336 * 340.20429 * 5 2 1 7 7 N 1.34781 * 119.99920 * 160.19805 * 5 2 1 8 8 C 1.46958 * 120.65226 * 6.48330 * 7 5 2 9 9 C 1.53197 * 108.88830 * 126.46209 * 8 7 5 10 10 C 1.53044 * 109.31034 * 54.55486 * 9 8 7 11 11 C 1.53041 * 109.53921 * 298.63267 * 10 9 8 12 12 C 1.46928 * 120.62743 * 186.29720 * 7 5 2 13 13 H 1.08997 * 109.58352 * 113.68460 * 12 7 5 14 14 C 1.52994 * 109.59151 * 353.39740 * 12 7 5 15 15 H 1.09004 * 110.88712 * 313.95691 * 14 12 7 16 16 C 1.55156 * 111.00674 * 190.06999 * 14 12 7 17 17 C 1.54324 * 102.94335 * 206.38669 * 16 14 12 18 18 N 1.47024 * 107.27246 * 22.19455 * 17 16 14 19 19 C 1.36933 * 125.65105 * 181.02446 * 18 17 16 20 20 H 1.07997 * 120.00178 * 175.62506 * 19 18 17 21 21 C 1.38815 * 119.99701 * 355.62857 * 19 18 17 22 22 N 1.31622 * 119.99396 * 215.72718 * 21 19 18 23 23 Si 1.86796 * 120.00090 * 36.00416 * 21 19 18 24 24 H 1.48499 * 109.47115 * 265.74170 * 23 21 19 25 25 H 1.48492 * 109.47433 * 25.74063 * 23 21 19 26 26 H 1.48504 * 109.47107 * 145.74406 * 23 21 19 27 27 C 1.47426 * 108.70036 * 1.28573 * 18 17 16 28 28 H 1.09000 * 109.47014 * 300.00523 * 1 2 3 29 29 H 1.08998 * 109.47040 * 59.99841 * 1 2 3 30 30 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.59645 * 6.60040 * 8 7 5 32 32 H 1.08999 * 109.58109 * 246.31238 * 8 7 5 33 33 H 1.09000 * 109.49405 * 294.60464 * 9 8 7 34 34 H 1.08995 * 109.49854 * 174.50233 * 9 8 7 35 35 H 1.09004 * 109.46064 * 178.61456 * 10 9 8 36 36 H 1.09003 * 109.45924 * 58.65588 * 10 9 8 37 37 H 1.08995 * 109.49944 * 301.41880 * 11 10 9 38 38 H 1.09001 * 109.52291 * 181.33186 * 11 10 9 39 39 H 1.09004 * 110.72088 * 88.02368 * 16 14 12 40 40 H 1.08997 * 110.87090 * 324.82425 * 16 14 12 41 41 H 1.09005 * 109.88038 * 262.77723 * 17 16 14 42 42 H 1.08998 * 109.88631 * 141.61068 * 17 16 14 43 43 H 0.96997 * 120.00202 * 5.27873 * 22 21 19 44 44 H 1.08996 * 110.36762 * 94.48748 * 27 18 17 45 45 H 1.09008 * 110.36798 * 216.80969 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0323 -0.7103 1.2305 6 8 1.3028 -0.8528 2.1888 7 7 3.2924 -1.1874 1.2661 8 6 4.2329 -0.9013 0.1738 9 6 5.5093 -0.2941 0.7646 10 6 6.0629 -1.2294 1.8421 11 6 5.0350 -1.3808 2.9658 12 6 3.7532 -2.0004 2.3999 13 1 3.9568 -3.0165 2.0620 14 6 2.6743 -2.0269 3.4842 15 1 2.2822 -1.0263 3.6669 16 6 3.2166 -2.6592 4.7932 17 6 1.9424 -3.2176 5.4611 18 7 0.9392 -3.4015 4.4022 19 6 -0.3378 -3.8611 4.5838 20 1 -1.0234 -3.8944 3.7500 21 6 -0.7512 -4.2841 5.8396 22 7 -1.5823 -5.2985 5.9517 23 14 -0.1341 -3.4086 7.3700 24 1 1.0599 -4.1165 7.8977 25 1 0.2306 -2.0105 7.0274 26 1 -1.2023 -3.4029 8.4017 27 6 1.5379 -3.0151 3.1116 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.7807 -0.1951 -0.5224 32 1 4.4766 -1.8256 -0.3500 33 1 5.2799 0.6753 1.2072 34 1 6.2511 -0.1682 -0.0239 35 1 6.9846 -0.8116 2.2471 36 1 6.2688 -2.2061 1.4043 37 1 4.8101 -0.4013 3.3876 38 1 5.4390 -2.0281 3.7442 39 1 3.6821 -1.9014 5.4236 40 1 3.9207 -3.4619 4.5740 41 1 1.5726 -2.5102 6.2034 42 1 2.1611 -4.1747 5.9347 43 1 -1.8459 -5.7989 5.1637 44 1 1.9442 -3.8903 2.6047 45 1 0.7973 -2.5210 2.4826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039178293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:58 Heat of formation + Delta-G solvation = -71.053834 kcal Electronic energy + Delta-G solvation = -29262.616104 eV Core-core repulsion = 25146.104390 eV Total energy + Delta-G solvation = -4116.511713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.46440 -47.36620 -40.82481 -37.81591 -37.19514 -33.29689 -33.06280 -31.71200 -31.34484 -29.04335 -28.11357 -26.00984 -24.50512 -23.82456 -22.65534 -21.19453 -20.42517 -19.95614 -19.78210 -17.99639 -17.76444 -17.24112 -16.92702 -15.96975 -15.66646 -15.19458 -14.80341 -14.70780 -14.38655 -14.13809 -14.05858 -13.70334 -13.65421 -13.59741 -13.27269 -13.05399 -12.97358 -12.69493 -12.51209 -12.46621 -12.14238 -11.95789 -11.81045 -11.50464 -11.18687 -11.04417 -10.90335 -10.78012 -10.59598 -10.40473 -10.15629 -9.89011 -9.53213 -9.11417 -8.98227 -8.64526 -8.15628 -6.87832 -6.26307 -2.94104 2.12734 2.46799 3.44928 3.54434 3.63506 3.75590 3.78302 4.17177 4.40968 4.49450 4.63258 4.65088 4.76457 4.83316 5.01237 5.09578 5.20883 5.26120 5.28804 5.40151 5.42633 5.44185 5.53225 5.61878 5.68339 5.69168 5.73698 5.79501 5.85833 5.89855 5.95523 6.11025 6.19880 6.32293 6.40112 6.53427 6.74689 6.85640 6.99069 7.11329 7.15027 7.85741 7.94129 8.47869 9.17155 9.78069 10.47567 11.22187 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.004942 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.037671 B = 5663.794259 C = 6799.123678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.278 3.722 3 F -0.187 7.187 4 F -0.190 7.190 5 C 0.467 3.533 6 O -0.456 6.456 7 N -0.592 5.592 8 C 0.097 3.903 9 C -0.134 4.134 10 C -0.121 4.121 11 C -0.130 4.130 12 C 0.157 3.843 13 H 0.077 0.923 14 C -0.102 4.102 15 H 0.109 0.891 16 C -0.127 4.127 17 C 0.108 3.892 18 N -0.606 5.606 19 C -0.330 4.330 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.907 5.907 23 Si 1.043 2.957 24 H -0.296 1.296 25 H -0.289 1.289 26 H -0.301 1.301 27 C 0.148 3.852 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.007 0.993 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.449 12.068 -14.337 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.238 3.762 3 F -0.168 7.168 4 F -0.171 7.171 5 C 0.249 3.751 6 O -0.328 6.328 7 N -0.326 5.326 8 C -0.025 4.025 9 C -0.173 4.173 10 C -0.158 4.158 11 C -0.168 4.168 12 C 0.055 3.945 13 H 0.095 0.905 14 C -0.122 4.122 15 H 0.127 0.873 16 C -0.166 4.166 17 C -0.017 4.017 18 N -0.332 5.332 19 C -0.457 4.457 20 H 0.095 0.905 21 C -0.215 4.215 22 N -0.547 5.547 23 Si 0.876 3.124 24 H -0.224 1.224 25 H -0.216 1.216 26 H -0.229 1.229 27 C 0.023 3.977 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.025 0.975 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.801 12.011 -12.193 22.628 hybrid contribution 0.417 0.083 -1.871 1.919 sum 15.218 12.094 -14.064 23.993 Atomic orbital electron populations 1.22613 0.88752 1.06663 1.05900 1.21598 0.95955 0.75950 0.82688 1.93057 1.90509 1.36630 1.96636 1.93002 1.90048 1.80819 1.53220 1.20748 0.83059 0.82139 0.89107 1.90948 1.55948 1.52882 1.33039 1.48035 1.10440 1.51741 1.22336 1.22047 0.90114 1.01496 0.88858 1.21927 0.96668 0.99573 0.99092 1.21549 0.98315 0.99830 0.96139 1.22005 0.94547 1.02131 0.98121 1.21450 0.94300 0.93355 0.85394 0.90505 1.23020 0.94189 1.02443 0.92512 0.87347 1.22690 0.97615 0.99344 0.96912 1.21655 0.88980 0.98040 0.93011 1.44767 1.09733 1.77660 1.01073 1.19914 0.88474 1.39646 0.97663 0.90487 1.25499 0.99443 0.97304 0.99267 1.70881 1.38055 1.14156 1.31602 0.84295 0.74746 0.76426 0.76940 1.22413 1.21629 1.22905 1.22013 0.93727 0.92376 0.89601 0.87956 0.89492 0.88562 0.89192 0.90740 0.91353 0.90560 0.91547 0.91656 0.91310 0.90062 0.91837 0.91960 0.94829 0.94807 0.92682 0.97506 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.85 37.16 0.33 -1.65 16 2 C 0.28 3.37 1.77 -27.88 -0.05 3.32 16 3 F -0.19 -2.27 16.56 2.25 0.04 -2.23 16 4 F -0.19 -2.18 14.39 2.25 0.03 -2.15 16 5 C 0.47 6.77 6.82 -10.98 -0.07 6.70 16 6 O -0.46 -8.22 8.98 5.56 0.05 -8.17 16 7 N -0.59 -7.53 2.98 -165.19 -0.49 -8.02 16 8 C 0.10 0.94 5.60 -3.69 -0.02 0.92 16 9 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 10 C -0.12 -1.00 5.88 -26.69 -0.16 -1.15 16 11 C -0.13 -1.38 4.87 -26.61 -0.13 -1.51 16 12 C 0.16 2.11 2.58 -67.60 -0.17 1.94 16 13 H 0.08 1.03 7.86 -51.93 -0.41 0.63 16 14 C -0.10 -1.81 1.91 -88.35 -0.17 -1.98 16 15 H 0.11 2.12 5.96 -52.01 -0.31 1.81 16 16 C -0.13 -2.25 5.07 -24.90 -0.13 -2.37 16 17 C 0.11 2.54 4.94 -3.06 -0.02 2.53 16 18 N -0.61 -16.04 3.37 -169.93 -0.57 -16.61 16 19 C -0.33 -10.01 10.37 -15.06 -0.16 -10.17 16 20 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 21 C -0.01 -0.43 5.41 -17.43 -0.09 -0.52 16 22 N -0.91 -29.26 13.70 55.49 0.76 -28.50 16 23 Si 1.04 27.83 24.91 -169.99 -4.23 23.59 16 24 H -0.30 -7.54 6.95 56.52 0.39 -7.15 16 25 H -0.29 -7.43 6.13 56.52 0.35 -7.08 16 26 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 27 C 0.15 3.27 5.89 -2.41 -0.01 3.26 16 28 H 0.10 1.18 7.90 -51.93 -0.41 0.77 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 0.86 4.91 -51.93 -0.25 0.60 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.82 7.15 -51.93 -0.37 0.45 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.98 7.82 -51.93 -0.41 0.58 16 41 H 0.03 0.84 4.19 -51.93 -0.22 0.62 16 42 H 0.03 0.84 7.38 -51.93 -0.38 0.45 16 43 H 0.26 8.39 8.73 -40.82 -0.36 8.03 16 44 H 0.01 0.16 7.85 -51.93 -0.41 -0.25 16 45 H 0.07 1.53 5.47 -52.22 -0.29 1.24 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -34.10 337.67 -7.24 -41.34 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.90 Total: -2.41 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.01 Total: -1.94 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.31 Total: -53.13 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.05 Total: -8.17 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.07 Total: -4.38 kcal Atomic # 14 Polarization: 27.83 SS G_CDS: -4.23 Total: 23.59 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.10 -7.24 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039178293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.710 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds