Wall clock time and date at job start Tue Mar 31 2020 12:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39899 * 109.47340 * 2 1 4 4 F 1.39899 * 109.47100 * 239.99704 * 2 1 3 5 5 C 1.50699 * 109.46981 * 120.00185 * 2 1 3 6 6 O 1.21280 * 119.99825 * 341.66388 * 5 2 1 7 7 N 1.34782 * 120.00073 * 161.65751 * 5 2 1 8 8 C 1.46921 * 120.62930 * 6.42459 * 7 5 2 9 9 C 1.53187 * 108.77551 * 233.62403 * 8 7 5 10 10 C 1.53035 * 109.31234 * 305.36675 * 9 8 7 11 11 C 1.53074 * 109.65983 * 61.30067 * 10 9 8 12 12 C 1.46927 * 120.63040 * 186.43767 * 7 5 2 13 13 H 1.08997 * 109.58827 * 246.30515 * 12 7 5 14 14 C 1.53005 * 109.58662 * 6.59002 * 12 7 5 15 15 H 1.09003 * 110.91119 * 41.10436 * 14 12 7 16 16 C 1.55159 * 111.00192 * 165.00397 * 14 12 7 17 17 C 1.54337 * 103.01477 * 153.37970 * 16 14 12 18 18 N 1.47017 * 107.26964 * 338.14275 * 17 16 14 19 19 C 1.36931 * 125.64829 * 178.85073 * 18 17 16 20 20 H 1.08003 * 120.00059 * 192.80132 * 19 18 17 21 21 C 1.38816 * 120.00262 * 12.79778 * 19 18 17 22 22 N 1.31624 * 119.99845 * 222.42632 * 21 19 18 23 23 Si 1.86791 * 119.99900 * 42.42119 * 21 19 18 24 24 H 1.48499 * 109.47471 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47257 * 240.00226 * 23 21 19 26 26 H 1.48499 * 109.47279 * 120.00380 * 23 21 19 27 27 C 1.47420 * 108.70199 * 358.58549 * 18 17 16 28 28 H 1.08996 * 109.46969 * 300.00266 * 1 2 3 29 29 H 1.09006 * 109.46802 * 59.99922 * 1 2 3 30 30 H 1.09000 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.58711 * 353.41602 * 8 7 5 32 32 H 1.09003 * 109.58807 * 113.69238 * 8 7 5 33 33 H 1.09003 * 109.49615 * 65.32155 * 9 8 7 34 34 H 1.09007 * 109.49803 * 185.37885 * 9 8 7 35 35 H 1.09004 * 109.46218 * 181.38193 * 10 9 8 36 36 H 1.08996 * 109.46351 * 301.34999 * 10 9 8 37 37 H 1.09006 * 109.62125 * 178.82807 * 11 10 9 38 38 H 1.09002 * 109.39256 * 58.72182 * 11 10 9 39 39 H 1.09001 * 110.72120 * 271.93852 * 16 14 12 40 40 H 1.09000 * 110.71892 * 35.03834 * 16 14 12 41 41 H 1.09001 * 109.98714 * 218.66051 * 17 16 14 42 42 H 1.09007 * 109.77615 * 97.50242 * 17 16 14 43 43 H 0.96993 * 120.00142 * 5.04084 * 22 21 19 44 44 H 1.09001 * 110.36908 * 143.19454 * 27 18 17 45 45 H 1.09007 * 110.36808 * 265.40679 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0323 -0.7104 1.2304 6 8 1.2944 -0.8763 2.1785 7 7 3.3015 -1.1616 1.2772 8 6 4.2479 -0.8474 0.1982 9 6 4.8552 -2.1543 -0.3211 10 6 5.4694 -2.9269 0.8485 11 6 4.3798 -3.2717 1.8668 12 6 3.7649 -1.9772 2.4081 13 1 4.5152 -1.4249 2.9738 14 6 2.5811 -2.3128 3.3175 15 1 1.6975 -2.5623 2.7299 16 6 2.9403 -3.4615 4.2967 17 6 2.0048 -3.2009 5.4963 18 7 1.6140 -1.7845 5.4453 19 6 0.7700 -1.1574 6.3225 20 1 0.3805 -0.1773 6.0901 21 6 0.4149 -1.7815 7.5106 22 7 -0.8318 -1.7369 7.9303 23 14 1.7063 -2.6847 8.5133 24 1 3.0211 -2.5876 7.8298 25 1 1.3210 -4.1127 8.6455 26 1 1.8038 -2.0715 9.8623 27 6 2.2862 -1.1497 4.2971 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.7233 -0.3409 -0.6120 32 1 5.0380 -0.2018 0.5817 33 1 4.0760 -2.7579 -0.7866 34 1 5.6287 -1.9295 -1.0555 35 1 5.9239 -3.8458 0.4781 36 1 6.2313 -2.3131 1.3290 37 1 4.8141 -3.8399 2.6894 38 1 3.6062 -3.8669 1.3815 39 1 2.7320 -4.4319 3.8460 40 1 3.9846 -3.3957 4.6019 41 1 2.5290 -3.4075 6.4294 42 1 1.1200 -3.8327 5.4181 43 1 -1.5163 -1.3319 7.3751 44 1 1.6280 -0.4175 3.8295 45 1 3.2145 -0.6753 4.6158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039178294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:02 Heat of formation + Delta-G solvation = -71.403918 kcal Electronic energy + Delta-G solvation = -29198.702574 eV Core-core repulsion = 25082.175680 eV Total energy + Delta-G solvation = -4116.526894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.50307 -47.39264 -40.78088 -37.81549 -37.13329 -33.27642 -33.03772 -31.71381 -31.36252 -29.00284 -28.05146 -25.96980 -24.50009 -23.81964 -22.64456 -21.24935 -20.23958 -19.84606 -19.75001 -18.05106 -17.76471 -17.28840 -16.97888 -15.99641 -15.54139 -15.19994 -14.95655 -14.64215 -14.37531 -14.06983 -13.91301 -13.72841 -13.66895 -13.42451 -13.34553 -13.14882 -12.79131 -12.73387 -12.53610 -12.48760 -12.11513 -11.98862 -11.81024 -11.44193 -11.17565 -10.97599 -10.88427 -10.75165 -10.55710 -10.32383 -10.14273 -9.82128 -9.52743 -9.31615 -9.02071 -8.63551 -8.04143 -6.83786 -6.29856 -2.91716 2.13720 2.47749 3.44505 3.58062 3.63856 3.74186 3.78524 4.15872 4.39729 4.51774 4.64256 4.66823 4.78609 4.84407 5.01702 5.10907 5.22230 5.25509 5.30351 5.40453 5.40595 5.41905 5.57887 5.62215 5.66774 5.71435 5.75644 5.78903 5.86978 5.95268 5.99326 6.12800 6.19696 6.34056 6.44320 6.57782 6.81563 6.94763 7.04775 7.12229 7.19270 7.92272 8.05473 8.51942 9.16538 9.82123 10.53964 11.16954 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.004776 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.217860 B = 5861.350642 C = 7090.405319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.277 3.723 3 F -0.186 7.186 4 F -0.188 7.188 5 C 0.465 3.535 6 O -0.455 6.455 7 N -0.591 5.591 8 C 0.087 3.913 9 C -0.131 4.131 10 C -0.121 4.121 11 C -0.129 4.129 12 C 0.156 3.844 13 H 0.076 0.924 14 C -0.095 4.095 15 H 0.101 0.899 16 C -0.129 4.129 17 C 0.123 3.877 18 N -0.600 5.600 19 C -0.340 4.340 20 H 0.072 0.928 21 C -0.002 4.002 22 N -0.894 5.894 23 Si 1.020 2.980 24 H -0.282 1.282 25 H -0.295 1.295 26 H -0.299 1.299 27 C 0.143 3.857 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.031 0.969 43 H 0.267 0.733 44 H 0.073 0.927 45 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.429 -0.543 -21.736 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.237 3.763 3 F -0.167 7.167 4 F -0.169 7.169 5 C 0.248 3.752 6 O -0.327 6.327 7 N -0.324 5.324 8 C -0.035 4.035 9 C -0.169 4.169 10 C -0.159 4.159 11 C -0.167 4.167 12 C 0.054 3.946 13 H 0.094 0.906 14 C -0.114 4.114 15 H 0.119 0.881 16 C -0.167 4.167 17 C -0.002 4.002 18 N -0.327 5.327 19 C -0.466 4.466 20 H 0.090 0.910 21 C -0.205 4.205 22 N -0.532 5.532 23 Si 0.851 3.149 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.228 1.228 27 C 0.018 3.982 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 11.211 -1.359 -19.762 22.761 hybrid contribution 0.195 0.924 -1.510 1.780 sum 11.406 -0.435 -21.271 24.140 Atomic orbital electron populations 1.22603 0.88786 1.06435 1.05998 1.21646 0.95941 0.76037 0.82632 1.93071 1.90490 1.36566 1.96607 1.92942 1.89732 1.80902 1.53358 1.20806 0.83788 0.82185 0.88409 1.90988 1.56210 1.53010 1.32496 1.48057 1.09756 1.51464 1.23153 1.22178 0.93271 0.97806 0.90258 1.21863 1.00591 0.96375 0.98067 1.21559 0.97955 1.00302 0.96079 1.22021 0.98353 0.97059 0.99298 1.21422 0.96999 0.90615 0.85543 0.90586 1.22754 0.96197 0.97228 0.95268 0.88145 1.22721 0.99325 0.97831 0.96873 1.21527 0.95655 0.87714 0.95308 1.44739 1.53828 1.03838 1.30264 1.19776 1.21919 1.04497 1.00399 0.90997 1.25676 0.99127 0.99396 0.96346 1.70857 0.99611 1.39253 1.43517 0.84596 0.77698 0.76094 0.76536 1.20845 1.22290 1.22759 1.22046 0.94775 0.94127 0.87263 0.87857 0.89529 0.88735 0.88436 0.91041 0.91256 0.90684 0.91558 0.91742 0.90004 0.91340 0.91822 0.92123 0.95441 0.95068 0.92344 0.90943 0.98193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.83 37.16 0.33 -1.55 16 2 C 0.28 3.30 1.77 -27.88 -0.05 3.25 16 3 F -0.19 -2.33 16.78 2.25 0.04 -2.30 16 4 F -0.19 -2.04 14.25 2.25 0.03 -2.01 16 5 C 0.47 6.73 6.89 -10.98 -0.08 6.66 16 6 O -0.45 -8.23 8.98 5.56 0.05 -8.18 16 7 N -0.59 -7.55 2.97 -165.22 -0.49 -8.04 16 8 C 0.09 0.85 5.94 -3.72 -0.02 0.82 16 9 C -0.13 -1.05 6.08 -26.62 -0.16 -1.21 16 10 C -0.12 -1.01 5.88 -26.67 -0.16 -1.17 16 11 C -0.13 -1.37 4.76 -26.59 -0.13 -1.50 16 12 C 0.16 2.13 2.66 -67.60 -0.18 1.95 16 13 H 0.08 1.06 7.76 -51.93 -0.40 0.66 16 14 C -0.10 -1.69 1.96 -88.47 -0.17 -1.86 16 15 H 0.10 1.94 5.99 -51.93 -0.31 1.63 16 16 C -0.13 -2.28 5.04 -24.89 -0.13 -2.40 16 17 C 0.12 2.90 5.74 -3.06 -0.02 2.88 16 18 N -0.60 -15.96 3.24 -170.07 -0.55 -16.51 16 19 C -0.34 -10.31 10.22 -15.06 -0.15 -10.46 16 20 H 0.07 2.31 8.06 -52.48 -0.42 1.89 16 21 C 0.00 -0.07 5.22 -17.43 -0.09 -0.16 16 22 N -0.89 -28.67 13.70 55.49 0.76 -27.91 16 23 Si 1.02 27.08 26.31 -169.99 -4.47 22.61 16 24 H -0.28 -7.14 6.08 56.52 0.34 -6.79 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 26 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 27 C 0.14 3.21 6.00 -2.53 -0.02 3.20 16 28 H 0.10 1.19 7.91 -51.93 -0.41 0.78 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 0.93 4.56 -51.93 -0.24 0.70 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.84 6.91 -51.93 -0.36 0.48 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.97 7.52 -51.93 -0.39 0.58 16 41 H 0.03 0.68 3.97 -51.93 -0.21 0.47 16 42 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.27 8.48 8.73 -40.82 -0.36 8.12 16 44 H 0.07 1.75 5.40 -52.80 -0.29 1.46 16 45 H 0.00 0.01 7.78 -51.93 -0.40 -0.39 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -33.94 339.52 -7.40 -41.34 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.87 Total: -2.56 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.02 Total: -1.56 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.28 Total: -52.46 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.05 Total: -8.18 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.31 kcal Atomic # 14 Polarization: 27.08 SS G_CDS: -4.47 Total: 22.61 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.94 -7.40 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039178294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.062 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds