Wall clock time and date at job start Tue Mar 31 2020 12:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 F 1.39899 * 109.47340 * 2 1 4 4 F 1.39899 * 109.47100 * 239.99704 * 2 1 3 5 5 C 1.50699 * 109.46981 * 120.00185 * 2 1 3 6 6 O 1.21280 * 119.99825 * 341.66388 * 5 2 1 7 7 N 1.34782 * 120.00073 * 161.65751 * 5 2 1 8 8 C 1.46921 * 120.62930 * 6.42459 * 7 5 2 9 9 C 1.53187 * 108.77551 * 233.62403 * 8 7 5 10 10 C 1.53035 * 109.31234 * 305.36675 * 9 8 7 11 11 C 1.53074 * 109.65983 * 61.30067 * 10 9 8 12 12 C 1.46927 * 120.63040 * 186.43767 * 7 5 2 13 13 H 1.08997 * 109.58827 * 246.30515 * 12 7 5 14 14 C 1.53005 * 109.58662 * 6.59002 * 12 7 5 15 15 H 1.09003 * 110.91119 * 41.10436 * 14 12 7 16 16 C 1.55159 * 111.00192 * 165.00397 * 14 12 7 17 17 C 1.54337 * 103.01477 * 153.37970 * 16 14 12 18 18 N 1.47017 * 107.26964 * 338.14275 * 17 16 14 19 19 C 1.36931 * 125.64829 * 178.85073 * 18 17 16 20 20 H 1.08003 * 120.00059 * 192.80132 * 19 18 17 21 21 C 1.38816 * 120.00262 * 12.79778 * 19 18 17 22 22 N 1.31624 * 119.99845 * 222.42632 * 21 19 18 23 23 Si 1.86791 * 119.99900 * 42.42119 * 21 19 18 24 24 H 1.48499 * 109.47471 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47257 * 240.00226 * 23 21 19 26 26 H 1.48499 * 109.47279 * 120.00380 * 23 21 19 27 27 C 1.47420 * 108.70199 * 358.58549 * 18 17 16 28 28 H 1.08996 * 109.46969 * 300.00266 * 1 2 3 29 29 H 1.09006 * 109.46802 * 59.99922 * 1 2 3 30 30 H 1.09000 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.58711 * 353.41602 * 8 7 5 32 32 H 1.09003 * 109.58807 * 113.69238 * 8 7 5 33 33 H 1.09003 * 109.49615 * 65.32155 * 9 8 7 34 34 H 1.09007 * 109.49803 * 185.37885 * 9 8 7 35 35 H 1.09004 * 109.46218 * 181.38193 * 10 9 8 36 36 H 1.08996 * 109.46351 * 301.34999 * 10 9 8 37 37 H 1.09006 * 109.62125 * 178.82807 * 11 10 9 38 38 H 1.09002 * 109.39256 * 58.72182 * 11 10 9 39 39 H 1.09001 * 110.72120 * 271.93852 * 16 14 12 40 40 H 1.09000 * 110.71892 * 35.03834 * 16 14 12 41 41 H 1.09001 * 109.98714 * 218.66051 * 17 16 14 42 42 H 1.09007 * 109.77615 * 97.50242 * 17 16 14 43 43 H 0.96993 * 120.00142 * 5.04084 * 22 21 19 44 44 H 1.09001 * 110.36908 * 143.19454 * 27 18 17 45 45 H 1.09007 * 110.36808 * 265.40679 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0323 -0.7104 1.2304 6 8 1.2944 -0.8763 2.1785 7 7 3.3015 -1.1616 1.2772 8 6 4.2479 -0.8474 0.1982 9 6 4.8552 -2.1543 -0.3211 10 6 5.4694 -2.9269 0.8485 11 6 4.3798 -3.2717 1.8668 12 6 3.7649 -1.9772 2.4081 13 1 4.5152 -1.4249 2.9738 14 6 2.5811 -2.3128 3.3175 15 1 1.6975 -2.5623 2.7299 16 6 2.9403 -3.4615 4.2967 17 6 2.0048 -3.2009 5.4963 18 7 1.6140 -1.7845 5.4453 19 6 0.7700 -1.1574 6.3225 20 1 0.3805 -0.1773 6.0901 21 6 0.4149 -1.7815 7.5106 22 7 -0.8318 -1.7369 7.9303 23 14 1.7063 -2.6847 8.5133 24 1 3.0211 -2.5876 7.8298 25 1 1.3210 -4.1127 8.6455 26 1 1.8038 -2.0715 9.8623 27 6 2.2862 -1.1497 4.2971 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.7233 -0.3409 -0.6120 32 1 5.0380 -0.2018 0.5817 33 1 4.0760 -2.7579 -0.7866 34 1 5.6287 -1.9295 -1.0555 35 1 5.9239 -3.8458 0.4781 36 1 6.2313 -2.3131 1.3290 37 1 4.8141 -3.8399 2.6894 38 1 3.6062 -3.8669 1.3815 39 1 2.7320 -4.4319 3.8460 40 1 3.9846 -3.3957 4.6019 41 1 2.5290 -3.4075 6.4294 42 1 1.1200 -3.8327 5.4181 43 1 -1.5163 -1.3319 7.3751 44 1 1.6280 -0.4175 3.8295 45 1 3.2145 -0.6753 4.6158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039178294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:01 Heat of formation + Delta-G solvation = -93.367644 kcal Electronic energy + Delta-G solvation = -29199.654992 eV Core-core repulsion = 25082.175680 eV Total energy + Delta-G solvation = -4117.479313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.46965 -48.35822 -41.92754 -39.09929 -38.51735 -35.09052 -33.99639 -33.21325 -32.49498 -30.65730 -29.51838 -27.12561 -25.90274 -25.07510 -23.88941 -22.51910 -21.79091 -21.22790 -20.79095 -19.55775 -18.99993 -18.72028 -18.03491 -17.14524 -17.01885 -16.57096 -16.16754 -15.79281 -15.66341 -15.37506 -15.17744 -14.88519 -14.79306 -14.67991 -14.45769 -14.34267 -14.15244 -14.03356 -13.64909 -13.57943 -13.40277 -13.12296 -13.06698 -12.84940 -12.73738 -12.39949 -12.20478 -12.05573 -11.79140 -11.63955 -11.56913 -11.44466 -11.24645 -11.10897 -10.46204 -10.29534 -9.70776 -9.02491 -8.73411 -5.28339 1.02112 1.41654 1.46067 1.50313 1.69906 2.45742 2.55696 2.77913 2.86561 3.22509 3.44321 3.50088 3.64689 3.73976 3.88608 4.00536 4.05062 4.13193 4.24660 4.33462 4.41231 4.45048 4.49345 4.51787 4.62849 4.69147 4.78332 4.83415 4.90938 4.91904 4.97903 5.00761 5.06650 5.16897 5.19062 5.24590 5.34022 5.44520 5.47481 5.64239 5.70094 6.08502 6.13984 6.79031 6.85747 7.59132 8.27379 8.73655 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.004776 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.217860 B = 5861.350642 C = 7090.405319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.286 3.714 3 F -0.189 7.189 4 F -0.178 7.178 5 C 0.457 3.543 6 O -0.503 6.503 7 N -0.587 5.587 8 C 0.081 3.919 9 C -0.126 4.126 10 C -0.117 4.117 11 C -0.124 4.124 12 C 0.158 3.842 13 H 0.078 0.922 14 C -0.077 4.077 15 H 0.082 0.918 16 C -0.115 4.115 17 C 0.112 3.888 18 N -0.622 5.622 19 C -0.344 4.344 20 H 0.031 0.969 21 C -0.054 4.054 22 N -0.925 5.925 23 Si 1.077 2.923 24 H -0.261 1.261 25 H -0.283 1.283 26 H -0.294 1.294 27 C 0.141 3.859 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.026 0.974 42 H 0.011 0.989 43 H 0.252 0.748 44 H 0.050 0.950 45 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.897 -2.285 -23.759 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.246 3.754 3 F -0.170 7.170 4 F -0.159 7.159 5 C 0.241 3.759 6 O -0.379 6.379 7 N -0.320 5.320 8 C -0.040 4.040 9 C -0.164 4.164 10 C -0.154 4.154 11 C -0.162 4.162 12 C 0.056 3.944 13 H 0.096 0.904 14 C -0.097 4.097 15 H 0.100 0.900 16 C -0.153 4.153 17 C -0.013 4.013 18 N -0.348 5.348 19 C -0.472 4.472 20 H 0.049 0.951 21 C -0.252 4.252 22 N -0.565 5.565 23 Si 0.902 3.098 24 H -0.186 1.186 25 H -0.210 1.210 26 H -0.222 1.222 27 C 0.016 3.984 28 H 0.104 0.896 29 H 0.132 0.868 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.044 0.956 42 H 0.029 0.971 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 14.735 -3.101 -21.843 26.530 hybrid contribution -0.940 1.586 -0.979 2.087 sum 13.794 -1.516 -22.822 26.710 Atomic orbital electron populations 1.22617 0.87813 1.06760 1.06467 1.21424 0.96472 0.75569 0.81898 1.93067 1.90609 1.36761 1.96595 1.92963 1.89708 1.80675 1.52534 1.21272 0.84025 0.81895 0.88732 1.90973 1.57484 1.55091 1.34339 1.48245 1.09704 1.50450 1.23596 1.22454 0.92894 0.99368 0.89331 1.21864 1.01024 0.94985 0.98502 1.21554 0.97144 1.01389 0.95337 1.22004 0.98910 0.94921 1.00335 1.21376 0.94970 0.92617 0.85435 0.90433 1.22485 0.97499 0.94900 0.94773 0.89954 1.22718 0.99237 0.99165 0.94189 1.21743 0.96138 0.85390 0.98012 1.44852 1.53926 1.05615 1.30455 1.19617 1.22554 1.03394 1.01625 0.95144 1.26917 0.99945 1.00926 0.97420 1.70975 1.00258 1.41463 1.43792 0.83806 0.75596 0.75471 0.74918 1.18626 1.20996 1.22161 1.22173 0.93646 0.95656 0.86893 0.89590 0.86795 0.88550 0.88348 0.89840 0.91768 0.88119 0.89590 0.90984 0.88866 0.91664 0.88636 0.89456 0.95608 0.97097 0.93911 0.93265 0.98309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.72 8.83 71.98 0.64 -3.08 16 2 C 0.29 6.64 1.77 29.85 0.05 6.69 16 3 F -0.19 -4.61 16.78 44.97 0.75 -3.86 16 4 F -0.18 -3.52 14.25 44.97 0.64 -2.88 16 5 C 0.46 13.23 6.89 87.66 0.60 13.83 16 6 O -0.50 -19.06 8.98 -3.03 -0.03 -19.08 16 7 N -0.59 -14.10 2.97 -795.02 -2.36 -16.46 16 8 C 0.08 1.33 5.94 86.36 0.51 1.84 16 9 C -0.13 -1.50 6.08 30.67 0.19 -1.31 16 10 C -0.12 -1.39 5.88 30.63 0.18 -1.21 16 11 C -0.12 -2.14 4.76 30.68 0.15 -2.00 16 12 C 0.16 3.95 2.66 44.98 0.12 4.07 16 13 H 0.08 1.95 7.76 -2.39 -0.02 1.93 16 14 C -0.08 -2.67 1.96 -9.40 -0.02 -2.69 16 15 H 0.08 3.21 5.99 -2.40 -0.01 3.19 16 16 C -0.11 -3.77 5.04 31.79 0.16 -3.60 16 17 C 0.11 5.19 5.74 86.73 0.50 5.69 16 18 N -0.62 -33.94 3.24 -691.97 -2.24 -36.18 16 19 C -0.34 -21.92 10.22 84.04 0.86 -21.06 16 20 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 21 C -0.05 -3.42 5.22 84.86 0.44 -2.98 16 22 N -0.92 -61.65 13.70 21.65 0.30 -61.35 16 23 Si 1.08 55.39 26.31 68.60 1.80 57.20 16 24 H -0.26 -12.41 6.08 99.48 0.60 -11.81 16 25 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 26 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 27 C 0.14 6.48 6.00 86.85 0.52 7.00 16 28 H 0.09 2.10 7.91 -2.39 -0.02 2.08 16 29 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 1.63 4.56 -2.38 -0.01 1.62 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.09 0.77 8.14 -2.38 -0.02 0.76 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 1.44 6.91 -2.38 -0.02 1.43 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.09 2.43 7.52 -2.39 -0.02 2.41 16 41 H 0.03 1.22 3.97 -2.39 -0.01 1.21 16 42 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.25 17.00 8.73 -92.71 -0.81 16.19 16 44 H 0.05 2.53 5.40 -16.13 -0.09 2.44 16 45 H 0.00 -0.03 7.78 -2.38 -0.02 -0.05 16 Total: -1.00 -78.39 339.52 4.54 -73.85 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.78 Total: 7.59 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 4.90 Total: 1.19 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -4.31 Total: -114.00 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.03 Total: -19.08 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 1.40 Total: -6.74 kcal Atomic # 14 Polarization: 55.39 SS G_CDS: 1.80 Total: 57.20 kcal Total: -78.39 4.54 -73.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039178294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.521 kcal (2) G-P(sol) polarization free energy of solvation -78.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds