Wall clock time and date at job start Tue Mar 31 2020 12:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39905 * 109.47160 * 2 1 4 4 F 1.39903 * 109.47340 * 240.00194 * 2 1 3 5 5 C 1.50704 * 109.47537 * 120.00136 * 2 1 3 6 6 O 1.21276 * 119.99905 * 341.91207 * 5 2 1 7 7 N 1.34778 * 120.00010 * 161.90771 * 5 2 1 8 8 C 1.46925 * 120.62918 * 3.18890 * 7 5 2 9 9 C 1.53190 * 108.77409 * 126.36786 * 8 7 5 10 10 C 1.53041 * 109.31296 * 54.63368 * 9 8 7 11 11 C 1.53041 * 109.53497 * 298.63153 * 10 9 8 12 12 C 1.46924 * 120.62775 * 183.16371 * 7 5 2 13 13 H 1.08990 * 109.58891 * 113.70448 * 12 7 5 14 14 C 1.53002 * 109.58687 * 353.41715 * 12 7 5 15 15 H 1.08997 * 110.88547 * 54.58539 * 14 12 7 16 16 C 1.55162 * 111.00522 * 178.50535 * 14 12 7 17 17 C 1.54333 * 103.02116 * 153.37975 * 16 14 12 18 18 N 1.47021 * 107.26455 * 338.14298 * 17 16 14 19 19 C 1.36940 * 125.64392 * 178.84649 * 18 17 16 20 20 H 1.08002 * 119.99875 * 179.69502 * 19 18 17 21 21 C 1.38813 * 120.00130 * 359.41533 * 19 18 17 22 22 N 1.31619 * 119.99914 * 0.27979 * 21 19 18 23 23 Si 1.86796 * 119.99880 * 180.27567 * 21 19 18 24 24 H 1.48499 * 109.47590 * 60.00170 * 23 21 19 25 25 H 1.48505 * 109.47087 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47244 * 300.00202 * 23 21 19 27 27 C 1.47426 * 108.70774 * 358.58535 * 18 17 16 28 28 H 1.09000 * 109.46807 * 299.99562 * 1 2 3 29 29 H 1.08997 * 109.47685 * 59.99916 * 1 2 3 30 30 H 1.09001 * 109.47361 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.58200 * 246.15275 * 8 7 5 32 32 H 1.08998 * 109.58991 * 6.43394 * 8 7 5 33 33 H 1.09004 * 109.49773 * 174.57922 * 9 8 7 34 34 H 1.09003 * 109.50043 * 294.68118 * 9 8 7 35 35 H 1.09000 * 109.46499 * 58.65049 * 10 9 8 36 36 H 1.09004 * 109.46227 * 178.61633 * 10 9 8 37 37 H 1.08997 * 109.50069 * 301.41281 * 11 10 9 38 38 H 1.09007 * 109.49479 * 181.31849 * 11 10 9 39 39 H 1.08996 * 110.72141 * 271.94560 * 16 14 12 40 40 H 1.09004 * 110.71546 * 35.21521 * 16 14 12 41 41 H 1.08999 * 109.99107 * 218.66702 * 17 16 14 42 42 H 1.09001 * 109.77422 * 97.50053 * 17 16 14 43 43 H 0.96996 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.08994 * 110.36669 * 143.19058 * 27 18 17 45 45 H 1.08998 * 110.36230 * 265.41072 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.2933 -0.8803 2.1768 7 7 3.3031 -1.1571 1.2791 8 6 4.2306 -0.8980 0.1694 9 6 5.4937 -0.2347 0.7273 10 6 6.0747 -1.1088 1.8410 11 6 5.0553 -1.2370 2.9753 12 6 3.7872 -1.9118 2.4430 13 1 4.0128 -2.9360 2.1463 14 6 2.7135 -1.9182 3.5329 15 1 1.7676 -2.2954 3.1444 16 6 3.1766 -2.7395 4.7651 17 6 2.3856 -2.1007 5.9262 18 7 1.9983 -0.7485 5.4983 19 6 1.2629 0.1416 6.2347 20 1 1.0341 1.1170 5.8314 21 6 0.8067 -0.2120 7.4971 22 7 1.0855 -1.4007 7.9886 23 14 -0.2029 0.9993 8.4984 24 1 -1.4401 1.3468 7.7542 25 1 -0.5644 0.3846 9.8010 26 1 0.5936 2.2299 8.7364 27 6 2.5380 -0.5072 4.1478 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.4947 -1.8389 -0.3133 32 1 3.7572 -0.2357 -0.5555 33 1 6.2291 -0.1246 -0.0697 34 1 5.2422 0.7469 1.1290 35 1 6.3031 -2.0981 1.4445 36 1 6.9874 -0.6514 2.2231 37 1 4.8079 -0.2461 3.3559 38 1 5.4787 -1.8404 3.7784 39 1 2.9138 -3.7909 4.6487 40 1 4.2488 -2.6244 4.9244 41 1 3.0120 -2.0427 6.8163 42 1 1.4947 -2.6929 6.1352 43 1 0.7664 -1.6479 8.8706 44 1 1.8341 0.0791 3.5572 45 1 3.4988 0.0039 4.2091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039178295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:05 Heat of formation + Delta-G solvation = -70.013624 kcal Electronic energy + Delta-G solvation = -29365.173003 eV Core-core repulsion = 25248.706397 eV Total energy + Delta-G solvation = -4116.466606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.40885 -47.30175 -40.76400 -37.73434 -36.81597 -33.16209 -32.91437 -31.57280 -30.91859 -28.91525 -27.32562 -25.82398 -24.51474 -24.25320 -22.73737 -21.09833 -20.43569 -19.75946 -19.06724 -17.89371 -17.48536 -16.95434 -16.62368 -15.72497 -15.27345 -15.19050 -14.81244 -14.51667 -14.32488 -14.17070 -13.77581 -13.65599 -13.61179 -13.44353 -13.23973 -12.88397 -12.69429 -12.44946 -12.38898 -12.12277 -11.95065 -11.71272 -11.47995 -11.22520 -10.98614 -10.83205 -10.77099 -10.68895 -10.41134 -10.03037 -9.95874 -9.75138 -9.63003 -9.50674 -8.94035 -8.45509 -8.38564 -6.59145 -5.56234 -2.86676 2.23260 2.58014 3.48875 3.52403 3.53118 3.54151 3.81722 4.23712 4.47124 4.62052 4.63939 4.78982 4.83216 5.03639 5.21764 5.23827 5.29690 5.38897 5.46178 5.51290 5.63009 5.65869 5.73952 5.78001 5.81228 5.81913 5.90221 6.01798 6.07489 6.15631 6.28506 6.36611 6.45412 6.65713 6.73949 6.86199 7.04535 7.23321 7.32580 7.71021 7.79075 7.96567 7.99812 8.43328 9.38940 10.00375 10.68525 11.55886 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.004857 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.874122 B = 5763.754468 C = 6806.033482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.277 3.723 3 F -0.186 7.186 4 F -0.191 7.191 5 C 0.464 3.536 6 O -0.454 6.454 7 N -0.590 5.590 8 C 0.096 3.904 9 C -0.135 4.135 10 C -0.119 4.119 11 C -0.141 4.141 12 C 0.159 3.841 13 H 0.073 0.927 14 C -0.100 4.100 15 H 0.105 0.895 16 C -0.148 4.148 17 C 0.182 3.818 18 N -0.603 5.603 19 C -0.217 4.217 20 H 0.074 0.926 21 C -0.013 4.013 22 N -0.926 5.926 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.142 3.858 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.043 0.957 43 H 0.250 0.750 44 H 0.059 0.941 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 -0.928 -19.840 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.237 3.763 3 F -0.167 7.167 4 F -0.172 7.172 5 C 0.247 3.753 6 O -0.326 6.326 7 N -0.324 5.324 8 C -0.027 4.027 9 C -0.173 4.173 10 C -0.157 4.157 11 C -0.179 4.179 12 C 0.057 3.943 13 H 0.091 0.909 14 C -0.119 4.119 15 H 0.123 0.877 16 C -0.187 4.187 17 C 0.057 3.943 18 N -0.328 5.328 19 C -0.345 4.345 20 H 0.092 0.908 21 C -0.208 4.208 22 N -0.574 5.574 23 Si 0.740 3.260 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.214 1.214 27 C 0.016 3.984 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 6.961 -1.006 -19.123 20.375 hybrid contribution -0.257 0.702 0.378 0.838 sum 6.704 -0.304 -18.745 19.910 Atomic orbital electron populations 1.22599 0.88918 1.06335 1.05976 1.21630 0.95855 0.76106 0.82660 1.93073 1.90478 1.36517 1.96601 1.92978 1.89994 1.80897 1.53356 1.20709 0.83847 0.82379 0.88383 1.90949 1.56166 1.52834 1.32701 1.48068 1.09757 1.54365 1.20166 1.22082 0.90646 1.01295 0.88660 1.21930 0.96625 0.99869 0.98914 1.21543 0.98444 0.99775 0.95919 1.22193 0.94501 1.03259 0.97922 1.21369 0.94685 0.93599 0.84617 0.90877 1.22902 0.97250 0.99184 0.92595 0.87700 1.23082 0.99755 0.98452 0.97377 1.21057 0.96198 0.85342 0.91706 1.44438 1.61566 1.13463 1.13371 1.19010 1.24445 0.94689 0.96403 0.90846 1.24759 1.01378 0.97069 0.97624 1.69961 1.50471 1.19243 1.17760 0.86236 0.80166 0.80131 0.79484 1.21319 1.21705 1.21375 1.22123 0.95752 0.93666 0.86810 0.87840 0.89601 0.88796 0.90939 0.89065 0.90756 0.91218 0.92012 0.91654 0.89900 0.90155 0.92617 0.92690 0.94446 0.93915 0.93972 0.92308 0.97233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 8.83 37.15 0.33 -1.59 16 2 C 0.28 3.44 1.77 -27.88 -0.05 3.39 16 3 F -0.19 -2.45 16.62 2.25 0.04 -2.42 16 4 F -0.19 -2.16 14.31 2.25 0.03 -2.13 16 5 C 0.46 6.97 6.69 -10.98 -0.07 6.89 16 6 O -0.45 -8.40 9.06 5.56 0.05 -8.35 16 7 N -0.59 -7.93 2.96 -165.23 -0.49 -8.42 16 8 C 0.10 0.99 5.69 -3.71 -0.02 0.97 16 9 C -0.14 -1.28 6.08 -26.61 -0.16 -1.45 16 10 C -0.12 -1.19 5.88 -26.69 -0.16 -1.35 16 11 C -0.14 -1.86 4.72 -26.61 -0.13 -1.99 16 12 C 0.16 2.29 2.80 -67.60 -0.19 2.10 16 13 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.10 -1.88 2.13 -88.47 -0.19 -2.06 16 15 H 0.11 2.17 5.97 -52.02 -0.31 1.86 16 16 C -0.15 -2.89 6.32 -24.89 -0.16 -3.04 16 17 C 0.18 4.68 5.38 -3.06 -0.02 4.67 16 18 N -0.60 -16.47 3.39 -170.07 -0.58 -17.04 16 19 C -0.22 -6.43 10.28 -15.06 -0.15 -6.59 16 20 H 0.07 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 22 N -0.93 -28.47 10.31 55.49 0.57 -27.90 16 23 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C 0.14 3.19 5.66 -2.53 -0.01 3.17 16 28 H 0.10 1.22 7.91 -51.93 -0.41 0.81 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.93 4.79 -51.93 -0.25 0.69 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.29 5.66 -51.93 -0.29 1.00 16 38 H 0.08 1.06 6.51 -51.93 -0.34 0.72 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.98 6.15 -51.93 -0.32 0.66 16 41 H 0.04 1.05 7.53 -51.93 -0.39 0.66 16 42 H 0.04 1.22 7.36 -51.93 -0.38 0.84 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.06 1.41 5.41 -52.23 -0.28 1.12 16 45 H 0.01 0.23 5.35 -51.93 -0.28 -0.05 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -32.94 337.29 -8.00 -40.94 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.61 Total: -0.56 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.08 Total: 2.64 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.49 Total: -53.36 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.05 Total: -8.35 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.94 -8.00 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039178295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.074 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds