Wall clock time and date at job start Tue Mar 31 2020 12:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 F 1.39905 * 109.47160 * 2 1 4 4 F 1.39903 * 109.47340 * 240.00194 * 2 1 3 5 5 C 1.50704 * 109.47537 * 120.00136 * 2 1 3 6 6 O 1.21276 * 119.99905 * 341.91207 * 5 2 1 7 7 N 1.34778 * 120.00010 * 161.90771 * 5 2 1 8 8 C 1.46925 * 120.62918 * 3.18890 * 7 5 2 9 9 C 1.53190 * 108.77409 * 126.36786 * 8 7 5 10 10 C 1.53041 * 109.31296 * 54.63368 * 9 8 7 11 11 C 1.53041 * 109.53497 * 298.63153 * 10 9 8 12 12 C 1.46924 * 120.62775 * 183.16371 * 7 5 2 13 13 H 1.08990 * 109.58891 * 113.70448 * 12 7 5 14 14 C 1.53002 * 109.58687 * 353.41715 * 12 7 5 15 15 H 1.08997 * 110.88547 * 54.58539 * 14 12 7 16 16 C 1.55162 * 111.00522 * 178.50535 * 14 12 7 17 17 C 1.54333 * 103.02116 * 153.37975 * 16 14 12 18 18 N 1.47021 * 107.26455 * 338.14298 * 17 16 14 19 19 C 1.36940 * 125.64392 * 178.84649 * 18 17 16 20 20 H 1.08002 * 119.99875 * 179.69502 * 19 18 17 21 21 C 1.38813 * 120.00130 * 359.41533 * 19 18 17 22 22 N 1.31619 * 119.99914 * 0.27979 * 21 19 18 23 23 Si 1.86796 * 119.99880 * 180.27567 * 21 19 18 24 24 H 1.48499 * 109.47590 * 60.00170 * 23 21 19 25 25 H 1.48505 * 109.47087 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47244 * 300.00202 * 23 21 19 27 27 C 1.47426 * 108.70774 * 358.58535 * 18 17 16 28 28 H 1.09000 * 109.46807 * 299.99562 * 1 2 3 29 29 H 1.08997 * 109.47685 * 59.99916 * 1 2 3 30 30 H 1.09001 * 109.47361 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.58200 * 246.15275 * 8 7 5 32 32 H 1.08998 * 109.58991 * 6.43394 * 8 7 5 33 33 H 1.09004 * 109.49773 * 174.57922 * 9 8 7 34 34 H 1.09003 * 109.50043 * 294.68118 * 9 8 7 35 35 H 1.09000 * 109.46499 * 58.65049 * 10 9 8 36 36 H 1.09004 * 109.46227 * 178.61633 * 10 9 8 37 37 H 1.08997 * 109.50069 * 301.41281 * 11 10 9 38 38 H 1.09007 * 109.49479 * 181.31849 * 11 10 9 39 39 H 1.08996 * 110.72141 * 271.94560 * 16 14 12 40 40 H 1.09004 * 110.71546 * 35.21521 * 16 14 12 41 41 H 1.08999 * 109.99107 * 218.66702 * 17 16 14 42 42 H 1.09001 * 109.77422 * 97.50053 * 17 16 14 43 43 H 0.96996 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.08994 * 110.36669 * 143.19058 * 27 18 17 45 45 H 1.08998 * 110.36230 * 265.41072 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 1.2933 -0.8803 2.1768 7 7 3.3031 -1.1571 1.2791 8 6 4.2306 -0.8980 0.1694 9 6 5.4937 -0.2347 0.7273 10 6 6.0747 -1.1088 1.8410 11 6 5.0553 -1.2370 2.9753 12 6 3.7872 -1.9118 2.4430 13 1 4.0128 -2.9360 2.1463 14 6 2.7135 -1.9182 3.5329 15 1 1.7676 -2.2954 3.1444 16 6 3.1766 -2.7395 4.7651 17 6 2.3856 -2.1007 5.9262 18 7 1.9983 -0.7485 5.4983 19 6 1.2629 0.1416 6.2347 20 1 1.0341 1.1170 5.8314 21 6 0.8067 -0.2120 7.4971 22 7 1.0855 -1.4007 7.9886 23 14 -0.2029 0.9993 8.4984 24 1 -1.4401 1.3468 7.7542 25 1 -0.5644 0.3846 9.8010 26 1 0.5936 2.2299 8.7364 27 6 2.5380 -0.5072 4.1478 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.4947 -1.8389 -0.3133 32 1 3.7572 -0.2357 -0.5555 33 1 6.2291 -0.1246 -0.0697 34 1 5.2422 0.7469 1.1290 35 1 6.3031 -2.0981 1.4445 36 1 6.9874 -0.6514 2.2231 37 1 4.8079 -0.2461 3.3559 38 1 5.4787 -1.8404 3.7784 39 1 2.9138 -3.7909 4.6487 40 1 4.2488 -2.6244 4.9244 41 1 3.0120 -2.0427 6.8163 42 1 1.4947 -2.6929 6.1352 43 1 0.7664 -1.6479 8.8706 44 1 1.8341 0.0791 3.5572 45 1 3.4988 0.0039 4.2091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039178295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:05 Heat of formation + Delta-G solvation = -90.250011 kcal Electronic energy + Delta-G solvation = -29366.050518 eV Core-core repulsion = 25248.706397 eV Total energy + Delta-G solvation = -4117.344122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.40110 -48.29370 -41.98222 -39.03336 -38.33454 -34.95682 -33.94845 -32.81205 -32.33399 -30.73393 -28.80711 -27.24951 -26.28756 -25.21608 -24.06376 -22.17692 -22.03329 -21.29568 -20.30272 -19.02433 -18.84196 -18.46219 -17.87412 -16.91008 -16.84941 -16.56962 -16.31012 -15.86917 -15.65585 -15.30589 -15.04994 -14.84416 -14.61739 -14.53761 -14.43149 -14.15145 -13.93139 -13.81411 -13.57331 -13.46146 -13.33152 -13.17056 -12.86979 -12.78329 -12.65310 -12.38109 -12.08158 -11.99415 -11.87491 -11.67940 -11.49294 -11.44923 -11.35995 -11.22900 -10.70710 -10.19562 -9.60872 -8.77332 -7.83760 -5.17207 1.08058 1.40908 1.45655 1.51786 1.51951 2.49195 2.51686 2.84109 3.27756 3.33018 3.50138 3.62268 3.78722 3.87406 3.94242 4.00932 4.12133 4.24465 4.29584 4.34229 4.48861 4.51649 4.57361 4.60620 4.72283 4.77391 4.81911 4.92395 4.96136 5.03327 5.06128 5.13868 5.23102 5.24249 5.26998 5.41757 5.44622 5.51003 5.69692 5.70127 5.79875 6.14552 6.22622 6.83183 7.12851 7.82238 8.48043 9.26790 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015424 B = 0.004857 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.874122 B = 5763.754468 C = 6806.033482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.285 3.715 3 F -0.190 7.190 4 F -0.180 7.180 5 C 0.456 3.544 6 O -0.500 6.500 7 N -0.588 5.588 8 C 0.091 3.909 9 C -0.132 4.132 10 C -0.112 4.112 11 C -0.139 4.139 12 C 0.164 3.836 13 H 0.103 0.897 14 C -0.083 4.083 15 H 0.086 0.914 16 C -0.133 4.133 17 C 0.189 3.811 18 N -0.626 5.626 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.069 4.069 22 N -0.953 5.953 23 Si 0.978 3.022 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.277 1.277 27 C 0.144 3.856 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.003 0.997 42 H 0.002 0.998 43 H 0.246 0.754 44 H 0.045 0.955 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.004 -1.085 -22.359 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.246 3.754 3 F -0.171 7.171 4 F -0.161 7.161 5 C 0.240 3.760 6 O -0.376 6.376 7 N -0.320 5.320 8 C -0.030 4.030 9 C -0.170 4.170 10 C -0.149 4.149 11 C -0.177 4.177 12 C 0.062 3.938 13 H 0.120 0.880 14 C -0.102 4.102 15 H 0.104 0.896 16 C -0.171 4.171 17 C 0.064 3.936 18 N -0.352 5.352 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.806 3.194 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.203 1.203 27 C 0.020 3.980 28 H 0.105 0.895 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.021 0.979 42 H 0.020 0.980 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 8.558 -1.150 -21.703 23.357 hybrid contribution -0.708 0.774 1.105 1.524 sum 7.850 -0.376 -20.598 22.046 Atomic orbital electron populations 1.22621 0.87647 1.06900 1.06459 1.21440 0.96578 0.75536 0.81863 1.93067 1.90642 1.36842 1.96591 1.93000 1.89976 1.80642 1.52488 1.21214 0.84020 0.81994 0.88769 1.90934 1.57368 1.54798 1.34511 1.48247 1.09795 1.53366 1.20594 1.22372 0.90224 1.02817 0.87631 1.21939 0.96838 0.98620 0.99629 1.21518 0.97519 1.01267 0.94640 1.22144 0.94888 1.01231 0.99395 1.21303 0.93282 0.95538 0.83691 0.87961 1.22649 0.98190 0.95912 0.93460 0.89588 1.22950 1.00042 0.99179 0.94959 1.20835 0.94671 0.84915 0.93225 1.44789 1.61538 1.13687 1.15170 1.19367 1.25018 0.95294 0.97201 0.91084 1.25646 1.02748 0.99053 0.98711 1.70199 1.51357 1.20962 1.17733 0.85155 0.78626 0.78018 0.77577 1.20515 1.21547 1.20254 1.22242 0.95005 0.96097 0.84702 0.89523 0.86888 0.88269 0.88295 0.88925 0.87651 0.93129 0.89728 0.90631 0.92966 0.90005 0.90387 0.90371 0.97888 0.97959 0.94472 0.93764 0.96930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.65 8.83 71.98 0.64 -3.02 16 2 C 0.29 6.74 1.77 29.85 0.05 6.79 16 3 F -0.19 -4.83 16.62 44.97 0.75 -4.08 16 4 F -0.18 -3.61 14.31 44.97 0.64 -2.96 16 5 C 0.46 13.45 6.69 87.66 0.59 14.04 16 6 O -0.50 -19.02 9.06 -3.02 -0.03 -19.05 16 7 N -0.59 -14.65 2.96 -795.04 -2.35 -17.00 16 8 C 0.09 1.56 5.69 86.36 0.49 2.05 16 9 C -0.13 -2.04 6.08 30.67 0.19 -1.85 16 10 C -0.11 -1.81 5.88 30.62 0.18 -1.63 16 11 C -0.14 -3.37 4.72 30.67 0.14 -3.22 16 12 C 0.16 4.36 2.80 44.98 0.13 4.49 16 13 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.08 -3.10 2.13 -9.40 -0.02 -3.12 16 15 H 0.09 3.62 5.97 -5.81 -0.03 3.59 16 16 C -0.13 -5.16 6.32 31.79 0.20 -4.96 16 17 C 0.19 10.18 5.38 86.73 0.47 10.65 16 18 N -0.63 -35.78 3.39 -691.97 -2.35 -38.13 16 19 C -0.24 -14.81 10.28 84.03 0.86 -13.94 16 20 H 0.07 4.28 7.83 -2.91 -0.02 4.26 16 21 C -0.07 -4.24 5.49 84.86 0.47 -3.77 16 22 N -0.95 -61.10 10.31 21.65 0.22 -60.87 16 23 Si 0.98 48.89 29.55 68.60 2.03 50.92 16 24 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 25 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 27 C 0.14 6.68 5.66 86.86 0.49 7.17 16 28 H 0.09 2.09 7.91 -2.39 -0.02 2.07 16 29 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.60 4.79 -2.39 -0.01 1.59 16 33 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.05 1.60 5.66 -2.39 -0.01 1.58 16 38 H 0.08 1.96 6.51 -2.38 -0.02 1.94 16 39 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.08 2.68 6.15 -2.39 -0.01 2.66 16 41 H 0.00 0.17 7.53 -2.39 -0.02 0.16 16 42 H 0.00 0.13 7.36 -2.39 -0.02 0.11 16 43 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.04 2.22 5.41 -9.05 -0.05 2.17 16 45 H 0.01 0.61 5.35 -2.39 -0.01 0.59 16 Total: -1.00 -76.19 337.29 4.73 -71.46 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.95 Total: 10.04 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 4.87 Total: 9.67 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -4.48 Total: -116.00 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.03 Total: -19.05 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 1.39 Total: -7.04 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.03 Total: 50.92 kcal Total: -76.19 4.73 -71.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039178295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.786 kcal (2) G-P(sol) polarization free energy of solvation -76.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds