Wall clock time and date at job start Tue Mar 31 2020 11:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47236 * 2 1 4 4 C 1.50707 * 109.47597 * 239.99977 * 2 1 3 5 5 O 1.21281 * 119.99668 * 246.32309 * 4 2 1 6 6 N 1.34772 * 119.99761 * 66.31871 * 4 2 1 7 7 C 1.46943 * 120.44071 * 175.62749 * 6 4 2 8 8 C 1.53596 * 108.52901 * 125.75034 * 7 6 4 9 9 H 1.08996 * 110.59960 * 172.16911 * 8 7 6 10 10 C 1.53374 * 108.68522 * 294.36603 * 8 7 6 11 11 C 1.52912 * 109.76208 * 61.21038 * 10 8 7 12 12 C 1.53016 * 110.29409 * 59.36352 * 11 10 8 13 13 C 1.53366 * 109.24768 * 300.28187 * 12 11 10 14 14 H 1.09003 * 110.59428 * 177.54431 * 13 12 11 15 15 C 1.46951 * 120.44402 * 355.34646 * 6 4 2 16 16 N 1.47566 * 107.98646 * 56.39325 * 13 12 11 17 17 C 1.36935 * 121.61263 * 121.66595 * 16 13 12 18 18 H 1.08002 * 120.00202 * 154.87062 * 17 16 13 19 19 C 1.38816 * 120.00213 * 334.87614 * 17 16 13 20 20 N 1.31620 * 120.00253 * 151.71033 * 19 17 16 21 21 Si 1.86803 * 119.99685 * 331.71128 * 19 17 16 22 22 H 1.48498 * 109.47462 * 84.60709 * 21 19 17 23 23 H 1.48502 * 109.46927 * 204.60909 * 21 19 17 24 24 H 1.48504 * 109.47054 * 324.60629 * 21 19 17 25 25 C 1.53004 * 109.47198 * 119.99815 * 2 1 3 26 26 F 1.39901 * 109.47014 * 180.02562 * 25 2 1 27 27 F 1.39901 * 109.47224 * 300.00060 * 25 2 1 28 28 H 1.09004 * 109.46773 * 177.87486 * 1 2 3 29 29 H 1.08998 * 109.47236 * 57.88320 * 1 2 3 30 30 H 1.08994 * 109.47587 * 297.87821 * 1 2 3 31 31 H 1.09001 * 109.47423 * 67.46940 * 3 2 1 32 32 H 1.08997 * 109.47707 * 187.47023 * 3 2 1 33 33 H 1.08996 * 109.47215 * 307.47234 * 3 2 1 34 34 H 1.09002 * 109.62932 * 245.46130 * 7 6 4 35 35 H 1.08995 * 109.62916 * 5.83861 * 7 6 4 36 36 H 1.09000 * 109.49560 * 180.24639 * 10 8 7 37 37 H 1.08998 * 109.50014 * 300.36493 * 10 8 7 38 38 H 1.08997 * 108.46423 * 299.55353 * 11 10 8 39 39 H 1.09002 * 109.86662 * 180.02562 * 11 10 8 40 40 H 1.08997 * 109.50645 * 180.34799 * 12 11 10 41 41 H 1.08998 * 109.54628 * 60.23414 * 12 11 10 42 42 H 1.09000 * 109.62053 * 353.95325 * 15 6 4 43 43 H 1.09001 * 109.61929 * 114.50950 * 15 6 4 44 44 H 0.96993 * 119.99943 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.46822 * 60.00457 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.6322 -1.7590 -1.1228 6 7 1.8151 -0.1805 -2.4504 7 6 2.3823 -0.8137 -3.6490 8 6 1.2442 -1.0799 -4.6454 9 1 1.6428 -1.4217 -5.6006 10 6 0.2942 -2.1206 -4.0398 11 6 -0.3063 -1.5792 -2.7419 12 6 -1.0757 -0.2846 -3.0127 13 6 -0.1191 0.7576 -3.6051 14 1 -0.6545 1.6757 -3.8471 15 6 1.0026 1.0347 -2.6004 16 7 0.4923 0.1782 -4.8168 17 6 0.3682 0.7793 -6.0409 18 1 1.1103 0.6046 -6.8059 19 6 -0.7112 1.6132 -6.2986 20 7 -0.5931 2.5922 -7.1703 21 14 -2.3314 1.3458 -5.4080 22 1 -2.2903 2.0285 -4.0899 23 1 -3.4411 1.9052 -6.2209 24 1 -2.5506 -0.1089 -5.2054 25 6 2.0400 -0.7212 1.2493 26 9 3.4390 -0.7207 1.2495 27 9 1.5736 -0.0617 2.3916 28 1 -0.3633 -1.0270 -0.0381 29 1 -0.3633 0.5463 -0.8704 30 1 -0.3634 0.4805 0.9083 31 1 1.7898 1.9164 0.9492 32 1 3.1217 1.4455 -0.1336 33 1 1.5717 1.9934 -0.8156 34 1 3.1172 -0.1481 -4.1018 35 1 2.8603 -1.7542 -3.3748 36 1 -0.5172 -2.3229 -4.7389 37 1 0.8424 -3.0416 -3.8412 38 1 0.5059 -1.3786 -2.0432 39 1 -0.9814 -2.3178 -2.3098 40 1 -1.4926 0.0930 -2.0791 41 1 -1.8827 -0.4808 -3.7187 42 1 0.5706 1.3073 -1.6375 43 1 1.6267 1.8491 -2.9684 44 1 -1.3475 3.1746 -7.3506 45 1 1.6767 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039906508.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:55 Heat of formation + Delta-G solvation = -58.832094 kcal Electronic energy + Delta-G solvation = -30390.826408 eV Core-core repulsion = 26274.844670 eV Total energy + Delta-G solvation = -4115.981739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.04309 -46.97949 -41.43617 -38.29336 -35.81792 -34.03468 -33.01918 -32.23976 -30.98402 -27.78431 -27.32963 -26.62129 -25.91032 -23.97191 -22.53104 -21.91357 -21.43746 -19.64262 -18.44957 -17.71498 -17.28802 -16.89445 -16.68114 -16.14196 -15.56840 -15.20775 -15.02417 -14.44529 -14.08598 -14.01200 -13.96871 -13.68399 -13.50694 -13.36551 -13.29694 -12.84562 -12.56924 -12.52857 -12.35901 -12.24322 -12.14988 -12.08012 -11.90772 -11.57256 -11.43530 -11.10138 -10.93785 -10.61125 -10.49201 -10.37616 -10.14535 -9.95195 -9.78159 -9.39063 -9.34678 -8.82090 -8.09400 -7.05220 -6.09724 -3.37680 2.60314 2.97345 3.17611 3.38183 3.41234 3.63229 4.03932 4.21296 4.32927 4.40611 4.59978 4.68749 4.95123 5.07738 5.12581 5.23631 5.31571 5.33838 5.39180 5.41451 5.45962 5.52103 5.52916 5.58767 5.64842 5.80643 5.87656 5.96100 6.01451 6.04547 6.12439 6.18337 6.21518 6.28722 6.48509 6.57948 6.61631 6.63497 6.82015 6.89246 7.55699 7.76611 8.18033 8.19985 8.77866 9.58049 9.98882 11.05407 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.005313 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.177716 B = 5268.381468 C = 5570.292061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.134 4.134 3 C -0.164 4.164 4 C 0.530 3.470 5 O -0.545 6.545 6 N -0.581 5.581 7 C 0.100 3.900 8 C 0.157 3.843 9 H 0.089 0.911 10 C -0.127 4.127 11 C -0.134 4.134 12 C -0.156 4.156 13 C 0.137 3.863 14 H 0.100 0.900 15 C 0.071 3.929 16 N -0.591 5.591 17 C -0.259 4.259 18 H 0.088 0.912 19 C 0.028 3.972 20 N -0.895 5.895 21 Si 0.865 3.135 22 H -0.282 1.282 23 H -0.305 1.305 24 H -0.265 1.265 25 C 0.288 3.712 26 F -0.195 7.195 27 F -0.203 7.203 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.264 0.736 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -4.334 14.620 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.138 4.138 3 C -0.220 4.220 4 C 0.318 3.682 5 O -0.423 6.423 6 N -0.312 5.312 7 C -0.023 4.023 8 C 0.050 3.950 9 H 0.107 0.893 10 C -0.166 4.166 11 C -0.172 4.172 12 C -0.194 4.194 13 C 0.029 3.971 14 H 0.118 0.882 15 C -0.052 4.052 16 N -0.313 5.313 17 C -0.387 4.387 18 H 0.105 0.895 19 C -0.171 4.171 20 N -0.536 5.536 21 Si 0.696 3.304 22 H -0.210 1.210 23 H -0.234 1.234 24 H -0.192 1.192 25 C 0.234 3.766 26 F -0.176 7.176 27 F -0.184 7.184 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.098 -4.702 14.510 15.396 hybrid contribution -1.128 0.005 0.423 1.205 sum 0.969 -4.698 14.932 15.684 Atomic orbital electron populations 1.22459 0.90425 1.04362 1.05179 1.21823 0.99626 0.98893 0.93484 1.22278 1.02740 0.92358 1.04669 1.19632 0.79443 0.85014 0.84131 1.90717 1.42723 1.22683 1.86188 1.47946 1.50153 1.27499 1.05647 1.22299 0.96743 0.98361 0.84911 1.21251 0.90829 0.86675 0.96287 0.89317 1.21938 0.99578 0.97845 0.97275 1.21986 0.99952 0.96244 0.99009 1.22533 0.99542 0.96948 1.00426 1.21539 0.91996 0.96708 0.86850 0.88238 1.23049 0.94522 0.86625 1.01032 1.44725 1.61019 1.21950 1.03568 1.18844 1.06001 1.23309 0.90530 0.89491 1.25202 0.97823 0.97140 0.96977 1.69931 1.31104 1.15456 1.37125 0.87463 0.86159 0.78709 0.78069 1.21012 1.23351 1.19154 1.21451 0.75997 0.97188 0.81968 1.92988 1.30405 1.97573 1.96610 1.92955 1.88408 1.83920 1.53160 0.91023 0.88446 0.90344 0.90668 0.91200 0.89066 0.91239 0.89498 0.92381 0.92845 0.90027 0.94087 0.92638 0.90884 0.88432 0.90510 0.92658 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 6.74 37.15 0.25 -1.53 16 2 C -0.13 -1.64 0.46 -155.66 -0.07 -1.71 16 3 C -0.16 -1.81 7.79 37.16 0.29 -1.52 16 4 C 0.53 8.04 4.05 -10.98 -0.04 7.99 16 5 O -0.54 -9.64 14.90 5.56 0.08 -9.55 16 6 N -0.58 -9.06 1.65 -172.53 -0.28 -9.35 16 7 C 0.10 1.65 5.90 -3.49 -0.02 1.63 16 8 C 0.16 2.85 3.62 -66.84 -0.24 2.61 16 9 H 0.09 1.60 8.01 -51.93 -0.42 1.19 16 10 C -0.13 -2.17 5.56 -26.58 -0.15 -2.32 16 11 C -0.13 -2.17 4.79 -26.77 -0.13 -2.30 16 12 C -0.16 -2.70 4.37 -26.53 -0.12 -2.81 16 13 C 0.14 2.58 2.37 -67.10 -0.16 2.42 16 14 H 0.10 2.10 4.08 -51.93 -0.21 1.89 16 15 C 0.07 1.10 3.86 -3.73 -0.01 1.09 16 16 N -0.59 -12.52 2.30 -155.71 -0.36 -12.88 16 17 C -0.26 -6.63 10.10 -15.06 -0.15 -6.78 16 18 H 0.09 2.40 8.06 -52.49 -0.42 1.98 16 19 C 0.03 0.76 5.16 -17.43 -0.09 0.67 16 20 N -0.89 -25.76 13.97 55.49 0.78 -24.99 16 21 Si 0.86 20.38 23.52 -169.99 -4.00 16.38 16 22 H -0.28 -6.17 6.13 56.52 0.35 -5.82 16 23 H -0.31 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.27 -6.18 5.65 56.52 0.32 -5.86 16 25 C 0.29 3.53 3.78 37.16 0.14 3.67 16 26 F -0.19 -2.84 16.19 2.25 0.04 -2.80 16 27 F -0.20 -2.39 16.14 2.25 0.04 -2.36 16 28 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16 29 H 0.10 1.11 2.50 -51.93 -0.13 0.98 16 30 H 0.08 0.70 7.74 -51.93 -0.40 0.30 16 31 H 0.07 0.73 7.60 -51.93 -0.39 0.34 16 32 H 0.07 0.83 8.00 -51.93 -0.42 0.41 16 33 H 0.09 0.97 4.64 -51.93 -0.24 0.73 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.41 6.98 -51.93 -0.36 1.04 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.27 1.73 -51.94 -0.09 1.18 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.81 6.02 -51.93 -0.31 0.50 16 41 H 0.07 1.44 4.61 -51.93 -0.24 1.20 16 42 H 0.10 1.25 2.28 -51.93 -0.12 1.13 16 43 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.12 1.27 8.03 -51.93 -0.42 0.85 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -29.31 312.95 -5.45 -34.76 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.95 Total: 4.97 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.51 Total: 1.10 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.13 Total: -47.21 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.07 Total: -5.16 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.00 Total: 16.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.31 -5.45 -34.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039906508.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.075 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds