Wall clock time and date at job start Tue Mar 31 2020 11:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39905 * 109.46646 * 2 1 4 4 F 1.39894 * 109.47304 * 119.99992 * 2 1 3 5 5 C 1.52999 * 109.47195 * 240.00416 * 2 1 3 6 6 C 1.50705 * 109.47021 * 179.97438 * 5 2 1 7 7 O 1.21279 * 120.00188 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99906 * 179.97438 * 6 5 2 9 9 C 1.47487 * 125.66204 * 359.69222 * 8 6 5 10 10 C 1.55276 * 104.77822 * 155.88454 * 9 8 6 11 11 C 1.54508 * 101.41184 * 36.68559 * 10 9 8 12 12 C 1.47191 * 125.66346 * 180.02562 * 8 6 5 13 13 C 1.52238 * 110.24808 * 83.59201 * 11 10 9 14 14 C 1.53162 * 109.65341 * 62.91722 * 13 11 10 15 15 C 1.53187 * 109.27408 * 60.17839 * 14 13 11 16 16 N 1.46934 * 108.92455 * 304.76910 * 15 14 13 17 17 C 1.36934 * 120.70476 * 234.13971 * 16 15 14 18 18 H 1.07994 * 120.00158 * 27.24039 * 17 16 15 19 19 C 1.38813 * 119.99950 * 207.24289 * 17 16 15 20 20 N 1.31618 * 120.00506 * 17.21862 * 19 17 16 21 21 Si 1.86801 * 119.99702 * 197.21960 * 19 17 16 22 22 H 1.48498 * 109.47464 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.46759 * 120.00007 * 21 19 17 24 24 H 1.48496 * 109.47185 * 239.99416 * 21 19 17 25 25 C 1.47080 * 118.59145 * 54.16782 * 16 15 14 26 26 H 1.08999 * 109.47484 * 60.00109 * 1 2 3 27 27 H 1.09002 * 109.46948 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47654 * 299.99566 * 1 2 3 29 29 H 1.09002 * 109.47016 * 299.99766 * 5 2 1 30 30 H 1.08999 * 109.47334 * 59.99383 * 5 2 1 31 31 H 1.08999 * 110.35183 * 274.84978 * 9 8 6 32 32 H 1.09004 * 110.35418 * 37.12999 * 9 8 6 33 33 H 1.09003 * 111.23273 * 278.59510 * 10 9 8 34 34 H 1.08992 * 110.90208 * 154.63733 * 10 9 8 35 35 H 1.09001 * 109.90471 * 300.87859 * 12 8 6 36 36 H 1.08999 * 109.90991 * 61.95127 * 12 8 6 37 37 H 1.08996 * 109.43686 * 182.97538 * 13 11 10 38 38 H 1.09005 * 109.43643 * 302.89650 * 13 11 10 39 39 H 1.08996 * 109.50502 * 180.12042 * 14 13 11 40 40 H 1.09006 * 109.50615 * 300.19663 * 14 13 11 41 41 H 1.09000 * 109.56598 * 64.60403 * 15 14 13 42 42 H 1.08997 * 109.56598 * 184.82749 * 15 14 13 43 43 H 0.96998 * 120.00520 * 180.02562 * 20 19 17 44 44 H 1.09012 * 109.57597 * 187.74568 * 25 16 15 45 45 H 1.09001 * 109.58379 * 67.35490 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9963 -0.6595 1.1422 5 6 2.0400 -0.7212 -1.2493 6 6 3.5470 -0.7206 -1.2496 7 8 4.1534 -0.1947 -0.3404 8 7 4.2209 -1.3045 -2.2602 9 6 3.6132 -1.9828 -3.4203 10 6 4.6954 -1.9131 -4.5316 11 6 5.9904 -2.0963 -3.7090 12 6 5.6857 -1.3771 -2.3860 13 6 6.2574 -3.5758 -3.4691 14 6 6.4861 -4.2819 -4.8089 15 6 7.6953 -3.6556 -5.5106 16 7 7.4769 -2.2080 -5.6352 17 6 7.5634 -1.5902 -6.8542 18 1 7.3549 -2.1452 -7.7569 19 6 7.9193 -0.2506 -6.9298 20 7 8.4949 0.3365 -5.9019 21 14 7.5813 0.7190 -8.4902 22 1 6.9316 -0.1648 -9.4913 23 1 6.6829 1.8599 -8.1792 24 1 8.8611 1.2327 -9.0408 25 6 7.1640 -1.4363 -4.4228 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.6767 -1.7488 -1.2493 30 1 1.6766 -0.2074 -2.1392 31 1 3.3834 -3.0198 -3.1755 32 1 2.7114 -1.4583 -3.7365 33 1 4.6845 -0.9454 -5.0331 34 1 4.5695 -2.7245 -5.2483 35 1 6.1068 -0.3719 -2.4045 36 1 6.1026 -1.9386 -1.5500 37 1 7.1432 -3.6879 -2.8441 38 1 5.3995 -4.0223 -2.9661 39 1 6.6748 -5.3411 -4.6345 40 1 5.6016 -4.1683 -5.4359 41 1 8.5943 -3.8398 -4.9225 42 1 7.8107 -4.0955 -6.5011 43 1 8.7432 1.2726 -5.9546 44 1 6.8970 -0.4159 -4.6981 45 1 8.0320 -1.4236 -3.7637 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040375732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:23 Heat of formation + Delta-G solvation = -118.698853 kcal Electronic energy + Delta-G solvation = -28151.409495 eV Core-core repulsion = 24032.831739 eV Total energy + Delta-G solvation = -4118.577756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.92868 -46.91473 -40.22622 -38.43487 -35.80860 -33.52230 -33.03583 -31.39528 -30.00823 -29.35171 -28.83317 -25.45541 -25.33550 -23.12675 -22.21942 -21.97383 -20.68517 -19.31565 -18.17916 -17.71043 -17.25906 -16.72277 -16.61040 -15.90134 -15.82441 -14.90674 -14.80383 -14.38019 -14.07848 -13.83611 -13.57372 -13.39596 -13.25770 -13.19240 -13.11928 -12.91693 -12.71532 -12.61139 -12.38860 -12.32775 -12.27030 -12.02830 -11.71955 -11.24143 -11.16990 -11.03339 -10.77374 -10.64250 -10.44273 -10.20180 -10.08601 -9.89610 -9.80452 -9.56785 -9.45244 -8.51248 -8.47566 -6.71196 -5.82434 -3.24084 2.65680 2.94166 3.34078 3.42581 3.44135 3.60801 3.85073 4.17564 4.20720 4.45561 4.66609 4.84299 4.89330 4.98616 5.01400 5.20827 5.24027 5.38107 5.39590 5.46037 5.46952 5.48741 5.56647 5.62337 5.76917 5.96452 6.00985 6.12132 6.18980 6.30774 6.34102 6.39129 6.44645 6.64087 6.71310 6.77178 6.85186 6.97462 7.27684 7.57776 7.62606 7.76429 8.20030 8.39986 9.16874 9.80679 10.37736 11.26139 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017649 B = 0.003632 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.082109 B = 7708.408895 C = 8499.837319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.306 3.694 3 F -0.192 7.192 4 F -0.193 7.193 5 C -0.185 4.185 6 C 0.524 3.476 7 O -0.528 6.528 8 N -0.611 5.611 9 C 0.093 3.907 10 C -0.107 4.107 11 C -0.092 4.092 12 C 0.121 3.879 13 C -0.094 4.094 14 C -0.135 4.135 15 C 0.143 3.857 16 N -0.589 5.589 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.898 3.102 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.189 3.811 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.017 0.983 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.090 0.910 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.457 -5.984 7.369 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.270 3.730 3 F -0.173 7.173 4 F -0.174 7.174 5 C -0.226 4.226 6 C 0.311 3.689 7 O -0.405 6.405 8 N -0.345 5.345 9 C -0.029 4.029 10 C -0.145 4.145 11 C -0.094 4.094 12 C -0.002 4.002 13 C -0.132 4.132 14 C -0.174 4.174 15 C 0.017 3.983 16 N -0.311 5.311 17 C -0.380 4.380 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.728 3.272 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.063 3.937 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -16.064 -5.476 7.934 18.734 hybrid contribution -0.051 0.572 -0.728 0.927 sum -16.115 -4.904 7.207 18.321 Atomic orbital electron populations 1.22794 0.91334 1.05443 1.05606 1.20619 0.92902 0.76158 0.83366 1.93053 1.90582 1.36883 1.96767 1.93037 1.90606 1.80781 1.53012 1.22831 0.95392 1.04772 0.99561 1.19748 0.88735 0.78812 0.81651 1.90784 1.69845 1.44634 1.35215 1.48574 1.08210 1.55437 1.22320 1.22594 0.97411 0.96579 0.86349 1.22746 0.92306 1.03701 0.95750 1.21821 0.98705 0.95741 0.93135 1.21992 0.78862 1.01481 0.97825 1.21288 1.00217 0.94325 0.97353 1.22086 1.00843 0.97795 0.96659 1.20910 0.93598 0.86089 0.97709 1.44018 1.80755 1.01678 1.04648 1.19183 1.40235 0.93751 0.84871 0.91605 1.25017 0.98516 0.98772 0.97222 1.70025 1.42155 1.11693 1.30661 0.86286 0.77669 0.80144 0.83061 1.20269 1.21591 1.21741 1.20626 0.90660 0.96000 0.86417 0.89131 0.89198 0.89707 0.86196 0.86058 0.91560 0.91250 0.90295 0.89520 0.90928 0.91847 0.92476 0.93556 0.93164 0.92090 0.96550 0.92917 0.93604 0.89141 0.96206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 9.38 37.16 0.35 -0.92 16 2 C 0.31 3.50 1.85 -26.73 -0.05 3.45 16 3 F -0.19 -2.83 16.14 2.25 0.04 -2.79 16 4 F -0.19 -2.75 16.15 2.25 0.04 -2.71 16 5 C -0.19 -1.89 4.30 -27.88 -0.12 -2.01 16 6 C 0.52 8.13 7.62 -10.98 -0.08 8.04 16 7 O -0.53 -10.53 15.16 5.56 0.08 -10.45 16 8 N -0.61 -9.18 3.33 -170.52 -0.57 -9.75 16 9 C 0.09 1.13 6.38 -2.30 -0.01 1.12 16 10 C -0.11 -1.66 5.74 -24.73 -0.14 -1.80 16 11 C -0.09 -1.58 0.55 -154.08 -0.09 -1.66 16 12 C 0.12 2.07 6.05 -3.33 -0.02 2.05 16 13 C -0.09 -1.46 4.55 -27.04 -0.12 -1.59 16 14 C -0.13 -2.12 5.89 -26.55 -0.16 -2.27 16 15 C 0.14 2.82 6.49 -3.71 -0.02 2.80 16 16 N -0.59 -13.77 2.85 -172.68 -0.49 -14.26 16 17 C -0.25 -6.52 9.60 -15.06 -0.14 -6.66 16 18 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 20 N -0.90 -25.49 11.17 55.49 0.62 -24.87 16 21 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.19 4.23 3.83 -4.04 -0.02 4.21 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.12 0.95 7.86 -51.93 -0.41 0.54 16 31 H 0.07 0.70 7.74 -51.93 -0.40 0.30 16 32 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 33 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 34 H 0.09 1.31 6.00 -51.93 -0.31 1.00 16 35 H 0.07 1.40 7.80 -51.93 -0.40 0.99 16 36 H 0.06 1.08 7.83 -51.93 -0.41 0.67 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.64 7.46 -51.93 -0.39 0.25 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.95 6.23 -51.93 -0.32 0.62 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.09 2.31 5.92 -51.92 -0.31 2.00 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -32.33 354.36 -7.78 -40.11 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.09 Total: -1.40 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.72 Total: 4.75 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.44 Total: -48.87 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.07 Total: -5.51 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.33 -7.78 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040375732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.591 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds