Wall clock time and date at job start Tue Mar 31 2020 11:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47030 * 2 1 4 4 C 1.50704 * 109.47243 * 119.99653 * 2 1 3 5 5 O 1.21286 * 120.00188 * 236.40258 * 4 2 1 6 6 N 1.34770 * 119.99909 * 56.40151 * 4 2 1 7 7 C 1.48249 * 127.00681 * 355.46552 * 6 4 2 8 8 C 1.55262 * 103.44977 * 141.50547 * 7 6 4 9 9 C 1.53217 * 102.45996 * 36.19219 * 8 7 6 10 10 C 1.53952 * 111.56569 * 101.23174 * 9 8 7 11 11 C 1.54588 * 102.67569 * 153.87819 * 10 9 8 12 12 N 1.47127 * 107.45005 * 339.26769 * 11 10 9 13 13 C 1.36939 * 125.60439 * 179.02901 * 12 11 10 14 14 H 1.08006 * 119.99895 * 179.97438 * 13 12 11 15 15 C 1.38816 * 120.00270 * 359.97226 * 13 12 11 16 16 N 1.31613 * 119.99478 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00053 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47318 * 59.99791 * 17 15 13 19 19 H 1.48507 * 109.47156 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47028 * 299.99585 * 17 15 13 21 21 C 1.47700 * 108.78713 * 358.99102 * 12 11 10 22 22 C 1.47890 * 127.00852 * 175.43115 * 6 4 2 23 23 C 1.52993 * 109.47375 * 239.99884 * 2 1 3 24 24 F 1.39901 * 109.47169 * 55.18458 * 23 2 1 25 25 F 1.39904 * 109.47368 * 175.18668 * 23 2 1 26 26 H 1.09001 * 109.47290 * 293.30117 * 1 2 3 27 27 H 1.08999 * 109.47052 * 53.29871 * 1 2 3 28 28 H 1.08994 * 109.47128 * 173.29978 * 1 2 3 29 29 H 1.08999 * 109.47075 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46888 * 299.99944 * 3 2 1 31 31 H 1.09003 * 109.47486 * 59.99984 * 3 2 1 32 32 H 1.09001 * 110.62901 * 259.99548 * 7 6 4 33 33 H 1.09004 * 110.62509 * 22.85518 * 7 6 4 34 34 H 1.09006 * 110.80538 * 277.95039 * 8 7 6 35 35 H 1.09002 * 110.80652 * 154.43997 * 8 7 6 36 36 H 1.09004 * 110.72900 * 35.62721 * 10 9 8 37 37 H 1.08995 * 110.87189 * 272.20452 * 10 9 8 38 38 H 1.08999 * 109.86922 * 219.75528 * 11 10 9 39 39 H 1.09001 * 109.86472 * 98.77033 * 11 10 9 40 40 H 0.97002 * 119.99963 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.38791 * 141.42305 * 21 12 11 42 42 H 1.09003 * 110.39206 * 263.80118 * 21 12 11 43 43 H 1.08995 * 110.04928 * 85.93133 * 22 6 4 44 44 H 1.09006 * 110.08384 * 324.48824 * 22 6 4 45 45 H 1.09006 * 109.46862 * 295.18634 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7825 -0.1416 1.9953 6 7 1.6480 -1.9775 1.4812 7 6 0.6715 -2.7830 0.7095 8 6 1.2934 -4.2057 0.7138 9 6 1.9246 -4.2863 2.1076 10 6 1.0481 -5.0969 3.0797 11 6 2.0778 -5.6259 4.1042 12 7 3.4020 -5.5758 3.4650 13 6 4.5843 -5.9424 4.0506 14 1 5.5076 -5.8689 3.4951 15 6 4.5962 -6.4084 5.3581 16 7 3.4711 -6.4974 6.0351 17 14 6.2091 -6.9077 6.1571 18 1 7.1302 -5.7431 6.1829 19 1 5.9523 -7.3672 7.5457 20 1 6.8271 -8.0104 5.3776 21 6 3.2462 -5.0661 2.0875 22 6 2.1150 -2.8483 2.5816 23 6 2.0400 -0.7212 -1.2492 24 9 1.4855 -0.1288 -2.3888 25 9 3.4347 -0.6262 -1.3058 26 1 -0.3634 0.4065 0.9438 27 1 -0.3633 0.6142 -0.8239 28 1 -0.3633 -1.0206 -0.1199 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 -0.2995 -2.7870 1.2047 33 1 0.5805 -2.4042 -0.3085 34 1 2.0538 -4.2982 -0.0616 35 1 0.5216 -4.9660 0.5935 36 1 0.5595 -5.9224 2.5619 37 1 0.3131 -4.4560 3.5665 38 1 1.8359 -6.6534 4.3758 39 1 2.0718 -4.9964 4.9941 40 1 3.4793 -6.8226 6.9490 41 1 4.0737 -4.4044 1.8316 42 1 3.1881 -5.8937 1.3805 43 1 1.5214 -2.6685 3.4779 44 1 3.1686 -2.6590 2.7873 45 1 1.7488 -1.7708 -1.2070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041651065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:56 Heat of formation + Delta-G solvation = -102.421530 kcal Electronic energy + Delta-G solvation = -28515.824059 eV Core-core repulsion = 24397.952140 eV Total energy + Delta-G solvation = -4117.871919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.28301 -47.22664 -40.65224 -38.75920 -35.89125 -35.34284 -32.67696 -30.62242 -29.23912 -28.56821 -27.47286 -26.88258 -25.85313 -24.48944 -22.64933 -21.90074 -20.26595 -19.44694 -18.84701 -17.78928 -17.66413 -17.32901 -16.77911 -16.12589 -15.72842 -15.16902 -14.72483 -14.48238 -14.19514 -13.99758 -13.80596 -13.65566 -13.59840 -13.42214 -13.19541 -12.90053 -12.75325 -12.57578 -12.53797 -12.10511 -12.08656 -11.91009 -11.70235 -11.48529 -11.36671 -11.32931 -10.91339 -10.78076 -10.74638 -10.24053 -10.09119 -10.03953 -9.86459 -9.75137 -9.62686 -8.72372 -8.58376 -6.83632 -5.70865 -3.04247 2.36211 2.76598 3.42225 3.44185 3.46625 3.47504 3.76648 3.89900 4.13552 4.46239 4.49724 4.53404 4.68679 4.75839 4.79979 4.90721 5.07935 5.20787 5.22899 5.33492 5.39019 5.48429 5.51171 5.52687 5.69385 5.73327 5.78091 5.84116 5.92753 5.96652 6.07730 6.12406 6.26597 6.29261 6.46027 6.50143 6.69149 6.77402 7.45230 7.55197 7.59296 7.81979 8.02424 8.25524 9.22399 9.82321 10.47498 11.40747 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.003513 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.214972 B = 7967.642583 C = 8295.641636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.132 4.132 4 C 0.541 3.459 5 O -0.520 6.520 6 N -0.620 5.620 7 C 0.088 3.912 8 C -0.121 4.121 9 C -0.085 4.085 10 C -0.131 4.131 11 C 0.177 3.823 12 N -0.605 5.605 13 C -0.229 4.229 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.922 5.922 17 Si 0.911 3.089 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.150 3.850 22 C 0.131 3.869 23 C 0.269 3.731 24 F -0.198 7.198 25 F -0.194 7.194 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.252 0.748 41 H 0.039 0.961 42 H 0.023 0.977 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.106 10.569 -15.470 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.134 4.134 3 C -0.189 4.189 4 C 0.327 3.673 5 O -0.395 6.395 6 N -0.354 5.354 7 C -0.034 4.034 8 C -0.160 4.160 9 C -0.087 4.087 10 C -0.169 4.169 11 C 0.052 3.948 12 N -0.331 5.331 13 C -0.357 4.357 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.570 5.570 17 Si 0.742 3.258 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.023 3.977 22 C 0.010 3.990 23 C 0.215 3.785 24 F -0.179 7.179 25 F -0.175 7.175 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.040 0.960 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.558 10.912 -14.854 21.241 hybrid contribution 0.853 -0.333 0.412 1.004 sum -9.706 10.580 -14.441 20.364 Atomic orbital electron populations 1.22085 0.90304 1.04126 1.04351 1.21913 0.99646 0.99158 0.92674 1.21678 1.02882 0.91267 1.03090 1.19537 0.80917 0.80251 0.86572 1.90748 1.35569 1.64645 1.48529 1.49045 1.42978 1.12198 1.31170 1.23006 0.93092 0.91543 0.95783 1.22629 1.00381 0.95409 0.97578 1.21664 0.98434 0.94195 0.94363 1.22907 0.97939 0.98319 0.97780 1.21221 0.81959 0.99517 0.92098 1.44546 1.03784 1.76239 1.08553 1.19007 0.84850 1.36416 0.95454 0.90547 1.24774 0.97167 1.01565 0.96768 1.69943 1.24179 1.52236 1.10639 0.86210 0.82783 0.78381 0.78461 1.21140 1.21604 1.21199 1.21412 0.92798 0.94492 0.88964 1.21944 1.01582 0.87170 0.88305 1.22006 0.75314 0.98394 0.82757 1.92981 1.85097 1.86616 1.53192 1.93029 1.30486 1.97434 1.96582 0.90542 0.90326 0.90639 0.90809 0.91238 0.90691 0.90051 0.90566 0.90651 0.89479 0.91931 0.91977 0.93905 0.93574 0.93742 0.94257 0.95980 0.91106 0.89739 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 7.82 37.16 0.29 -0.84 16 2 C -0.13 -1.37 0.46 -155.66 -0.07 -1.44 16 3 C -0.13 -1.39 7.52 37.16 0.28 -1.12 16 4 C 0.54 7.75 6.44 -10.99 -0.07 7.68 16 5 O -0.52 -9.70 16.37 5.55 0.09 -9.61 16 6 N -0.62 -8.24 3.30 -169.97 -0.56 -8.80 16 7 C 0.09 0.82 4.91 -1.88 -0.01 0.81 16 8 C -0.12 -1.33 6.20 -25.42 -0.16 -1.48 16 9 C -0.08 -1.32 0.74 -153.86 -0.11 -1.43 16 10 C -0.13 -2.18 5.86 -25.40 -0.15 -2.33 16 11 C 0.18 4.10 5.33 -2.87 -0.02 4.09 16 12 N -0.60 -15.02 3.41 -170.49 -0.58 -15.60 16 13 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 14 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 15 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 16 N -0.92 -26.89 10.30 55.49 0.57 -26.31 16 17 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.15 2.95 6.03 -3.14 -0.02 2.93 16 22 C 0.13 2.15 6.26 -3.48 -0.02 2.13 16 23 C 0.27 2.75 4.08 37.15 0.15 2.90 16 24 F -0.20 -1.96 16.43 2.25 0.04 -1.92 16 25 F -0.19 -2.57 16.45 2.25 0.04 -2.53 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.49 7.90 -51.93 -0.41 0.08 16 28 H 0.07 0.46 4.85 -51.93 -0.25 0.21 16 29 H 0.07 0.91 7.61 -51.93 -0.40 0.51 16 30 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 31 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 32 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 33 H 0.08 0.52 3.73 -51.93 -0.19 0.32 16 34 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 35 H 0.09 0.81 7.59 -51.93 -0.39 0.42 16 36 H 0.06 0.95 7.74 -51.93 -0.40 0.55 16 37 H 0.06 0.94 7.69 -51.93 -0.40 0.54 16 38 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 39 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.04 0.80 7.76 -51.93 -0.40 0.40 16 42 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 43 H 0.07 1.20 7.47 -51.93 -0.39 0.81 16 44 H 0.08 1.67 7.50 -51.93 -0.39 1.28 16 45 H 0.12 0.95 5.27 -51.93 -0.27 0.68 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -32.64 348.96 -7.05 -39.70 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.73 Total: -2.52 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -0.16 Total: 5.11 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.57 Total: -50.72 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.07 Total: -4.45 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.64 -7.05 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041651065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.725 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds