Wall clock time and date at job start Tue Mar 31 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47451 * 2 1 4 4 C 1.50703 * 109.46692 * 119.99650 * 2 1 3 5 5 O 1.21284 * 120.00071 * 128.80942 * 4 2 1 6 6 N 1.34781 * 120.00092 * 308.80064 * 4 2 1 7 7 C 1.46593 * 119.75216 * 174.11866 * 6 4 2 8 8 C 1.53894 * 110.70734 * 132.27942 * 7 6 4 9 9 C 1.51978 * 107.35192 * 51.77729 * 8 7 6 10 10 H 1.08997 * 111.01327 * 56.55061 * 9 8 7 11 11 C 1.53692 * 115.00516 * 184.59028 * 9 8 7 12 12 C 1.55304 * 101.81599 * 153.46168 * 11 9 8 13 13 N 1.48323 * 107.03632 * 337.69146 * 12 11 9 14 14 C 1.36940 * 126.43616 * 175.06021 * 13 12 11 15 15 H 1.08000 * 119.99934 * 179.74965 * 14 13 12 16 16 C 1.38814 * 119.99981 * 359.74238 * 14 13 12 17 17 N 1.31613 * 119.99830 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00030 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47272 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47208 * 120.00000 * 18 16 14 21 21 H 1.48499 * 109.47349 * 240.00096 * 18 16 14 22 22 C 1.45510 * 107.16976 * 354.84335 * 13 12 11 23 23 H 1.09000 * 108.98808 * 273.81899 * 22 13 12 24 24 C 1.47794 * 119.75216 * 354.14494 * 6 4 2 25 25 C 1.52998 * 109.47429 * 239.99219 * 2 1 3 26 26 F 1.39902 * 109.47335 * 300.00811 * 25 2 1 27 27 F 1.39902 * 109.46681 * 60.00308 * 25 2 1 28 28 H 1.09007 * 109.47176 * 311.76478 * 1 2 3 29 29 H 1.09002 * 109.46768 * 71.75715 * 1 2 3 30 30 H 1.08990 * 109.47372 * 191.75916 * 1 2 3 31 31 H 1.09001 * 109.47006 * 195.54426 * 3 2 1 32 32 H 1.08999 * 109.47019 * 315.53468 * 3 2 1 33 33 H 1.08999 * 109.47655 * 75.54035 * 3 2 1 34 34 H 1.08999 * 109.23227 * 11.96538 * 7 6 4 35 35 H 1.08995 * 109.20036 * 252.57610 * 7 6 4 36 36 H 1.08993 * 109.89179 * 171.25942 * 8 7 6 37 37 H 1.08998 * 109.88944 * 292.29283 * 8 7 6 38 38 H 1.08995 * 110.96420 * 271.59159 * 11 9 8 39 39 H 1.09002 * 110.95982 * 35.30210 * 11 9 8 40 40 H 1.09001 * 109.91739 * 96.90157 * 12 11 9 41 41 H 1.08998 * 109.92491 * 218.20456 * 12 11 9 42 42 H 0.96999 * 120.00038 * 180.02562 * 17 16 14 43 43 H 1.09005 * 110.06447 * 350.45288 * 24 6 4 44 44 H 1.09005 * 110.06263 * 112.01096 * 24 6 4 45 45 H 1.08990 * 109.47295 * 180.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 2.8550 -1.5954 1.1266 6 7 1.5672 -0.3621 2.4467 7 6 1.9598 -1.1398 3.6257 8 6 2.4146 -0.2097 4.7644 9 6 1.3215 0.8265 4.9672 10 1 0.3638 0.3490 5.1739 11 6 1.6457 1.9195 5.9979 12 6 0.7712 3.1003 5.4950 13 7 0.4964 2.8563 4.0580 14 6 -0.3168 3.6025 3.2473 15 1 -0.4397 3.3315 2.2091 16 6 -0.9832 4.7070 3.7600 17 7 -0.8331 5.0373 5.0252 18 14 -2.0930 5.7244 2.6544 19 1 -2.0917 5.1476 1.2859 20 1 -3.4761 5.7120 3.1949 21 1 -1.5940 7.1221 2.6034 22 6 1.2568 1.6782 3.6693 23 1 2.2635 1.9839 3.3844 24 6 0.6649 0.8007 2.5816 25 6 2.0400 -0.7214 -1.2491 26 9 1.5736 -2.0404 -1.2491 27 9 1.5738 -0.0619 -2.3914 28 1 -0.3634 0.6845 0.7666 29 1 -0.3633 0.3217 -0.9760 30 1 -0.3633 -1.0060 0.2094 31 1 3.0946 1.4549 -0.2754 32 1 1.4697 2.0295 -0.7199 33 1 1.9193 1.8706 0.9951 34 1 2.7788 -1.8076 3.3589 35 1 1.1095 -1.7319 3.9639 36 1 2.5548 -0.7849 5.6795 37 1 3.3471 0.2836 4.4901 38 1 1.3464 1.6119 6.9998 39 1 2.7041 2.1787 5.9716 40 1 -0.1662 3.1310 6.0504 41 1 1.3097 4.0400 5.6179 42 1 -1.2991 5.8089 5.3835 43 1 0.6197 1.3500 1.6411 44 1 -0.3324 0.4686 2.8702 45 1 3.1299 -0.7218 -1.2488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042227676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:25 Heat of formation + Delta-G solvation = -96.309674 kcal Electronic energy + Delta-G solvation = -29130.481780 eV Core-core repulsion = 25012.874892 eV Total energy + Delta-G solvation = -4117.606889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.99055 -46.93366 -40.74446 -38.48335 -35.73443 -35.26390 -32.94294 -31.34205 -29.41242 -28.57522 -27.57945 -26.43602 -25.03884 -24.18972 -22.70115 -21.39600 -20.27751 -19.76662 -19.02326 -17.54223 -17.22797 -16.99487 -16.52417 -16.11060 -15.28485 -15.06937 -14.92990 -14.56502 -14.30125 -14.06650 -13.73224 -13.61579 -13.59686 -13.29682 -13.11873 -12.70766 -12.57092 -12.33955 -12.27773 -12.14887 -11.92673 -11.79971 -11.59709 -11.39069 -11.26832 -10.97823 -10.88376 -10.77437 -10.70330 -10.21152 -10.06780 -9.88290 -9.86230 -9.71116 -9.35280 -8.73618 -8.53367 -6.96405 -5.82582 -3.17169 2.56351 2.89074 3.32548 3.37881 3.40909 3.68636 4.04739 4.20480 4.39968 4.41349 4.72863 4.87177 5.02186 5.09370 5.09647 5.14494 5.30306 5.44876 5.48569 5.51094 5.59418 5.61349 5.64616 5.68718 5.72458 5.79752 5.89253 5.97203 6.00041 6.08270 6.09998 6.17538 6.24369 6.39587 6.51732 6.55673 6.68481 6.93368 7.36876 7.45684 7.51800 7.70873 8.09529 8.13566 9.06416 9.70552 10.37972 11.29521 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013395 B = 0.005315 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.871377 B = 5266.916138 C = 7003.160693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.157 4.157 4 C 0.532 3.468 5 O -0.546 6.546 6 N -0.596 5.596 7 C 0.113 3.887 8 C -0.119 4.119 9 C -0.111 4.111 10 H 0.077 0.923 11 C -0.138 4.138 12 C 0.177 3.823 13 N -0.592 5.592 14 C -0.233 4.233 15 H 0.079 0.921 16 C -0.003 4.003 17 N -0.917 5.917 18 Si 0.908 3.092 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.153 3.847 23 H 0.025 0.975 24 C 0.086 3.914 25 C 0.288 3.712 26 F -0.197 7.197 27 F -0.202 7.202 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.253 0.747 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.251 -9.941 -5.431 12.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.136 4.136 3 C -0.214 4.214 4 C 0.319 3.681 5 O -0.424 6.424 6 N -0.328 5.328 7 C -0.010 4.010 8 C -0.157 4.157 9 C -0.131 4.131 10 H 0.095 0.905 11 C -0.176 4.176 12 C 0.053 3.947 13 N -0.317 5.317 14 C -0.361 4.361 15 H 0.097 0.903 16 C -0.200 4.200 17 N -0.564 5.564 18 Si 0.738 3.262 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.044 3.956 23 H 0.043 0.957 24 C -0.036 4.036 25 C 0.234 3.766 26 F -0.178 7.178 27 F -0.183 7.183 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.501 -10.211 -5.475 12.826 hybrid contribution -0.781 0.635 -0.526 1.136 sum 4.719 -9.576 -6.001 12.247 Atomic orbital electron populations 1.22354 0.90571 1.04255 1.05011 1.21801 1.00106 0.98643 0.93091 1.22131 1.01972 0.91626 1.05625 1.19935 0.81010 0.82846 0.84354 1.90689 1.33136 1.32309 1.86314 1.48096 1.47810 1.30759 1.06137 1.21602 1.00727 0.93652 0.84986 1.21804 0.99041 0.97468 0.97433 1.22261 0.98133 0.95046 0.97684 0.90458 1.22718 1.00047 0.97275 0.97583 1.21581 0.96726 0.92731 0.83704 1.44220 1.52975 1.27132 1.07408 1.18994 1.19227 1.05931 0.91969 0.90347 1.24786 1.00313 0.98608 0.96291 1.69944 1.45848 1.28421 1.12172 0.86118 0.80317 0.80219 0.79535 1.20361 1.21719 1.21708 1.21026 0.94648 0.87716 0.92230 0.95728 1.22588 0.92957 0.85739 1.02277 1.21514 0.98129 0.74883 0.82110 1.92980 1.90940 1.37248 1.96641 1.92965 1.91207 1.81073 1.53042 0.88610 0.90641 0.91457 0.91393 0.90021 0.88911 0.89311 0.91832 0.90854 0.91469 0.92186 0.92515 0.92553 0.94358 0.93674 0.87469 0.90594 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 7.63 37.16 0.28 -1.77 16 2 C -0.13 -1.72 0.46 -155.66 -0.07 -1.79 16 3 C -0.16 -1.90 7.83 37.16 0.29 -1.61 16 4 C 0.53 7.99 6.24 -10.98 -0.07 7.92 16 5 O -0.55 -9.42 14.92 5.55 0.08 -9.34 16 6 N -0.60 -8.68 3.00 -172.74 -0.52 -9.20 16 7 C 0.11 1.50 6.36 -3.53 -0.02 1.48 16 8 C -0.12 -1.56 5.72 -26.78 -0.15 -1.71 16 9 C -0.11 -1.78 2.62 -89.52 -0.23 -2.02 16 10 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 11 C -0.14 -2.38 6.54 -25.15 -0.16 -2.54 16 12 C 0.18 3.97 5.46 -1.82 -0.01 3.96 16 13 N -0.59 -13.50 3.35 -162.77 -0.55 -14.05 16 14 C -0.23 -5.82 9.88 -15.06 -0.15 -5.97 16 15 H 0.08 1.84 7.41 -52.49 -0.39 1.45 16 16 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 17 N -0.92 -25.42 10.44 55.49 0.58 -24.84 16 18 Si 0.91 20.75 29.55 -169.99 -5.02 15.73 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.15 2.79 2.62 -67.83 -0.18 2.61 16 23 H 0.03 0.49 7.94 -51.93 -0.41 0.08 16 24 C 0.09 1.36 3.12 -3.95 -0.01 1.34 16 25 C 0.29 3.68 3.72 37.16 0.14 3.82 16 26 F -0.20 -2.91 16.33 2.25 0.04 -2.87 16 27 F -0.20 -2.56 16.35 2.25 0.04 -2.53 16 28 H 0.10 1.23 4.64 -51.93 -0.24 0.99 16 29 H 0.07 0.87 7.50 -51.93 -0.39 0.48 16 30 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 31 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 33 H 0.09 1.28 5.27 -51.93 -0.27 1.01 16 34 H 0.09 1.21 6.93 -51.93 -0.36 0.85 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.92 7.99 -51.93 -0.42 0.50 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 40 H 0.06 1.41 7.20 -51.93 -0.37 1.04 16 41 H 0.04 0.96 7.78 -51.93 -0.40 0.55 16 42 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.11 1.64 2.38 -51.93 -0.12 1.51 16 44 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 45 H 0.12 1.30 8.00 -51.93 -0.42 0.89 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -28.89 343.22 -7.34 -36.24 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.72 Total: 2.15 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -0.45 Total: 3.55 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.48 Total: -48.09 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.07 Total: -5.40 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.89 -7.34 -36.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042227676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.074 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds