Wall clock time and date at job start Tue Mar 31 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47538 * 2 1 4 4 C 1.50701 * 109.47221 * 120.00106 * 2 1 3 5 5 O 1.21285 * 120.00059 * 129.70316 * 4 2 1 6 6 N 1.34777 * 119.99621 * 309.70386 * 4 2 1 7 7 C 1.44750 * 117.18857 * 356.72580 * 6 4 2 8 8 C 1.50423 * 111.49899 * 213.71656 * 7 6 4 9 9 C 1.49442 * 114.71808 * 317.01776 * 8 7 6 10 10 H 1.08996 * 107.68293 * 166.27472 * 9 8 7 11 11 C 1.54525 * 112.96994 * 284.60346 * 9 8 7 12 12 C 1.55255 * 100.54236 * 165.81137 * 11 9 8 13 13 N 1.47469 * 105.14907 * 323.75838 * 12 11 9 14 14 C 1.36935 * 125.66641 * 200.99920 * 13 12 11 15 15 H 1.08001 * 120.00124 * 180.02562 * 14 13 12 16 16 C 1.38813 * 119.99746 * 0.02562 * 14 13 12 17 17 N 1.31614 * 120.00203 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99947 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47518 * 60.00055 * 18 16 14 20 20 H 1.48504 * 109.47294 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47177 * 300.00166 * 18 16 14 22 22 C 1.48531 * 108.53352 * 20.96795 * 13 12 11 23 23 H 1.09004 * 108.75492 * 121.13022 * 22 13 12 24 24 C 1.43788 * 117.18148 * 176.74149 * 6 4 2 25 25 C 1.53001 * 109.47042 * 239.99853 * 2 1 3 26 26 F 1.39900 * 109.47059 * 60.00336 * 25 2 1 27 27 F 1.39905 * 109.46998 * 180.02562 * 25 2 1 28 28 H 1.08999 * 109.47166 * 300.00367 * 1 2 3 29 29 H 1.09007 * 109.47065 * 59.99716 * 1 2 3 30 30 H 1.09000 * 109.47779 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47638 * 205.22395 * 3 2 1 32 32 H 1.09000 * 109.47011 * 325.21885 * 3 2 1 33 33 H 1.08997 * 109.47197 * 85.22081 * 3 2 1 34 34 H 1.09004 * 109.02830 * 334.33081 * 7 6 4 35 35 H 1.09003 * 109.03593 * 93.18171 * 7 6 4 36 36 H 1.08998 * 107.95187 * 195.86176 * 8 7 6 37 37 H 1.08999 * 108.52737 * 78.59981 * 8 7 6 38 38 H 1.09003 * 111.20512 * 47.99299 * 11 9 8 39 39 H 1.08997 * 111.24080 * 283.65149 * 11 9 8 40 40 H 1.09003 * 110.31857 * 82.70103 * 12 11 9 41 41 H 1.09001 * 110.32611 * 204.80760 * 12 11 9 42 42 H 0.97000 * 120.00554 * 180.02562 * 17 16 14 43 43 H 1.09003 * 108.05912 * 35.57033 * 24 6 4 44 44 H 1.08992 * 108.05988 * 279.06999 * 24 6 4 45 45 H 1.08999 * 109.47156 * 299.99951 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.8670 -1.5843 1.1278 6 7 1.5539 -0.3747 2.4449 7 6 0.6143 0.7248 2.5048 8 6 0.7688 1.5134 3.7764 9 6 0.9489 0.6853 5.0073 10 1 1.2912 1.3461 5.8037 11 6 -0.3635 0.0265 5.4882 12 6 0.1943 -1.0173 6.4931 13 7 1.4584 -1.4885 5.8975 14 6 2.0908 -2.6662 6.1944 15 1 3.0173 -2.9209 5.7012 16 6 1.5410 -3.5327 7.1292 17 7 0.4117 -3.2225 7.7297 18 14 2.4040 -5.1389 7.5347 19 1 3.7606 -4.8517 8.0662 20 1 1.6193 -5.8784 8.5559 21 1 2.5186 -5.9635 6.3050 22 6 1.9286 -0.4716 4.9222 23 1 2.9185 -0.1286 5.2233 24 6 2.0212 -1.1393 3.5693 25 6 2.0399 -0.7213 -1.2492 26 9 1.5736 -0.0618 -2.3915 27 9 3.4390 -0.7218 -1.2489 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 3.0376 1.4751 -0.4379 32 1 1.3654 2.0664 -0.5862 33 1 2.0804 1.8135 1.0241 34 1 0.7828 1.3832 1.6525 35 1 -0.3999 0.3290 2.4514 36 1 -0.1219 2.1294 3.9000 37 1 1.6307 2.1725 3.6726 38 1 -0.8856 -0.4597 4.6641 39 1 -1.0082 0.7494 5.9879 40 1 0.3823 -0.5495 7.4595 41 1 -0.5041 -1.8468 6.6042 42 1 0.0277 -3.8278 8.3832 43 1 3.0648 -1.3987 3.3913 44 1 1.4481 -2.0655 3.6097 45 1 1.6766 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042227677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:29 Heat of formation + Delta-G solvation = -82.617002 kcal Electronic energy + Delta-G solvation = -28895.902318 eV Core-core repulsion = 24778.889188 eV Total energy + Delta-G solvation = -4117.013130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.04000 -46.96743 -41.00268 -38.49414 -36.15141 -34.97787 -33.19306 -31.59165 -29.39221 -28.64063 -27.84792 -26.57942 -25.06255 -24.44322 -22.74523 -22.00409 -20.39758 -19.71014 -17.89629 -17.52701 -17.20558 -17.11324 -16.58136 -16.32121 -15.58629 -15.17785 -14.92578 -14.69190 -14.41795 -14.18640 -13.81921 -13.72506 -13.71015 -13.32359 -13.06189 -12.77582 -12.55914 -12.47953 -12.34818 -12.22213 -12.08074 -11.68073 -11.52036 -11.45260 -11.19154 -11.08828 -10.88558 -10.77493 -10.58955 -10.14534 -10.01374 -9.91282 -9.68842 -9.54700 -9.53502 -8.67826 -8.28103 -6.93607 -5.69815 -3.10715 2.60769 3.00078 3.40964 3.45013 3.46511 3.60715 4.02091 4.16249 4.27665 4.44711 4.61129 4.77571 4.89724 4.92627 4.99914 5.05916 5.21762 5.29861 5.34428 5.39766 5.41473 5.46586 5.50659 5.60631 5.71297 5.77510 5.84684 5.86291 5.92395 6.01310 6.14415 6.18754 6.43574 6.51629 6.57310 6.75600 6.92006 7.01179 7.46802 7.48093 7.60806 7.80979 8.23443 8.28686 9.17449 9.76869 10.41145 11.35184 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.004140 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.479775 B = 6760.943542 C = 7769.027852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.133 4.133 3 C -0.153 4.153 4 C 0.512 3.488 5 O -0.529 6.529 6 N -0.579 5.579 7 C 0.089 3.911 8 C -0.115 4.115 9 C -0.092 4.092 10 H 0.066 0.934 11 C -0.140 4.140 12 C 0.157 3.843 13 N -0.597 5.597 14 C -0.226 4.226 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.913 3.087 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.163 3.837 23 H 0.040 0.960 24 C 0.105 3.895 25 C 0.287 3.713 26 F -0.204 7.204 27 F -0.190 7.190 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.015 0.985 41 H 0.097 0.903 42 H 0.252 0.748 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 12.138 -14.744 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.138 4.138 3 C -0.210 4.210 4 C 0.297 3.703 5 O -0.405 6.405 6 N -0.310 5.310 7 C -0.033 4.033 8 C -0.154 4.154 9 C -0.111 4.111 10 H 0.085 0.915 11 C -0.179 4.179 12 C 0.032 3.968 13 N -0.322 5.322 14 C -0.354 4.354 15 H 0.095 0.905 16 C -0.202 4.202 17 N -0.570 5.570 18 Si 0.743 3.257 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.055 3.945 23 H 0.058 0.942 24 C -0.019 4.019 25 C 0.233 3.767 26 F -0.185 7.185 27 F -0.171 7.171 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.033 0.967 41 H 0.115 0.885 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.930 11.478 -14.554 18.765 hybrid contribution 0.547 -0.783 0.269 0.993 sum -2.382 10.694 -14.285 18.003 Atomic orbital electron populations 1.22568 0.90509 1.04392 1.05556 1.21824 0.99595 0.98682 0.93650 1.22069 1.02780 0.92195 1.03992 1.20050 0.82025 0.83723 0.84497 1.90760 1.31769 1.31936 1.86078 1.46677 1.43877 1.33570 1.06896 1.21521 0.93092 0.89094 0.99596 1.20486 1.02532 0.98351 0.93985 1.20610 0.97583 0.96369 0.96534 0.91542 1.23040 0.95404 0.99178 1.00263 1.21857 0.88596 0.95066 0.91235 1.45044 1.24288 1.18440 1.44444 1.19016 1.04058 0.93501 1.18810 0.90452 1.24762 0.97586 0.98940 0.98957 1.69842 1.19675 1.36918 1.30518 0.86180 0.78546 0.83172 0.77790 1.21147 1.21575 1.21055 1.20325 0.96129 0.89340 0.88695 0.94236 1.21417 1.00356 0.94714 0.85406 1.21442 0.76256 0.97086 0.81915 1.92958 1.88426 1.83926 1.53208 1.93006 1.30116 1.97475 1.96548 0.88137 0.90576 0.91344 0.90925 0.90372 0.90038 0.88526 0.91509 0.90559 0.92067 0.92347 0.92190 0.96667 0.88499 0.93693 0.91361 0.90892 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 7.74 37.15 0.29 -1.19 16 2 C -0.13 -1.48 0.46 -155.66 -0.07 -1.55 16 3 C -0.15 -1.42 7.78 37.16 0.29 -1.13 16 4 C 0.51 7.83 6.26 -10.98 -0.07 7.76 16 5 O -0.53 -10.27 14.57 5.55 0.08 -10.19 16 6 N -0.58 -8.73 3.11 -179.86 -0.56 -9.29 16 7 C 0.09 0.99 3.88 -6.26 -0.02 0.97 16 8 C -0.12 -1.32 5.35 -29.77 -0.16 -1.48 16 9 C -0.09 -1.45 2.47 -92.16 -0.23 -1.68 16 10 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 11 C -0.14 -2.42 6.54 -24.74 -0.16 -2.58 16 12 C 0.16 3.64 5.76 -2.32 -0.01 3.63 16 13 N -0.60 -14.60 2.96 -163.66 -0.48 -15.08 16 14 C -0.23 -6.15 9.66 -15.06 -0.15 -6.30 16 15 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 16 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 17 N -0.92 -26.37 10.15 55.49 0.56 -25.81 16 18 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.16 3.22 3.43 -68.33 -0.23 2.99 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 24 C 0.11 2.02 5.40 -6.41 -0.03 1.98 16 25 C 0.29 3.42 3.85 37.16 0.14 3.56 16 26 F -0.20 -2.27 16.54 2.25 0.04 -2.23 16 27 F -0.19 -2.81 15.40 2.25 0.03 -2.78 16 28 H 0.10 0.77 3.55 -51.93 -0.18 0.58 16 29 H 0.08 0.53 7.78 -51.92 -0.40 0.12 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.75 7.27 -51.93 -0.38 0.37 16 32 H 0.08 0.55 7.89 -51.93 -0.41 0.14 16 33 H 0.08 0.72 5.66 -51.93 -0.29 0.43 16 34 H 0.10 0.82 2.96 -51.93 -0.15 0.67 16 35 H 0.07 0.70 6.85 -51.93 -0.36 0.35 16 36 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 2.55 6.09 -51.93 -0.32 2.24 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.07 1.42 7.20 -51.93 -0.37 1.05 16 44 H 0.07 1.64 7.54 -51.93 -0.39 1.24 16 45 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -31.53 339.74 -7.35 -38.89 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.60 Total: -0.44 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.52 Total: 4.70 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.48 Total: -50.18 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.07 Total: -5.01 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.53 -7.35 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042227677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.732 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds