Wall clock time and date at job start Tue Mar 31 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47028 * 2 1 4 4 C 1.50694 * 109.47531 * 120.00244 * 2 1 3 5 5 O 1.21284 * 120.00394 * 119.46687 * 4 2 1 6 6 N 1.34783 * 119.99702 * 299.46230 * 4 2 1 7 7 C 1.46602 * 119.75130 * 175.63387 * 6 4 2 8 8 C 1.53885 * 110.70842 * 227.72492 * 7 6 4 9 9 C 1.51979 * 107.28831 * 308.18858 * 8 7 6 10 10 H 1.08994 * 111.56301 * 303.15151 * 9 8 7 11 11 C 1.53703 * 115.00509 * 175.44938 * 9 8 7 12 12 C 1.55245 * 101.71680 * 206.31166 * 11 9 8 13 13 N 1.48151 * 107.06852 * 22.82102 * 12 11 9 14 14 C 1.36938 * 126.39471 * 184.86500 * 13 12 11 15 15 H 1.08003 * 120.00088 * 169.61980 * 14 13 12 16 16 C 1.38816 * 120.00287 * 349.61703 * 14 13 12 17 17 N 1.31618 * 120.00039 * 163.95008 * 16 14 13 18 18 Si 1.86800 * 119.99832 * 343.96013 * 16 14 13 19 19 H 1.48496 * 109.47019 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.46747 * 299.99620 * 18 16 14 21 21 H 1.48495 * 109.47330 * 59.99499 * 18 16 14 22 22 C 1.45505 * 107.20699 * 4.60494 * 13 12 11 23 23 H 1.09001 * 109.57081 * 86.88542 * 22 13 12 24 24 C 1.47798 * 119.75615 * 355.61707 * 6 4 2 25 25 C 1.52997 * 109.47312 * 240.00299 * 2 1 3 26 26 F 1.39904 * 109.47178 * 59.99795 * 25 2 1 27 27 F 1.39902 * 109.47161 * 179.97438 * 25 2 1 28 28 H 1.09000 * 109.47338 * 288.01119 * 1 2 3 29 29 H 1.08995 * 109.47553 * 48.01801 * 1 2 3 30 30 H 1.09004 * 109.46963 * 168.01824 * 1 2 3 31 31 H 1.08993 * 109.47293 * 202.40225 * 3 2 1 32 32 H 1.09000 * 109.46711 * 322.40892 * 3 2 1 33 33 H 1.09002 * 109.46908 * 82.39689 * 3 2 1 34 34 H 1.08997 * 109.23122 * 107.40955 * 7 6 4 35 35 H 1.08999 * 109.19569 * 348.01953 * 7 6 4 36 36 H 1.08999 * 109.89340 * 188.73812 * 8 7 6 37 37 H 1.09003 * 109.95937 * 67.66945 * 8 7 6 38 38 H 1.09002 * 110.96029 * 324.66145 * 11 9 8 39 39 H 1.08994 * 110.95950 * 88.36164 * 11 9 8 40 40 H 1.09006 * 110.02032 * 263.40451 * 12 11 9 41 41 H 1.08992 * 109.79024 * 142.11821 * 12 11 9 42 42 H 0.97000 * 120.00157 * 354.88075 * 17 16 14 43 43 H 1.09002 * 110.06016 * 9.53982 * 24 6 4 44 44 H 1.08997 * 110.05776 * 247.98105 * 24 6 4 45 45 H 1.08999 * 109.47268 * 299.99794 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7217 -1.7021 1.1191 6 7 1.7158 -0.2437 2.4545 7 6 2.1260 -0.9916 3.6468 8 6 0.9474 -1.1467 4.6240 9 6 0.3685 0.2390 4.8570 10 1 1.1231 0.9308 5.2310 11 6 -0.8970 0.2763 5.7286 12 6 -1.5878 1.5726 5.2263 13 7 -1.0741 1.8385 3.8623 14 6 -1.3511 2.9342 3.0891 15 1 -0.7939 3.1088 2.1805 16 6 -2.3480 3.8207 3.4729 17 7 -2.4104 5.0170 2.9279 18 14 -3.6007 3.3156 4.7633 19 1 -4.5512 4.4328 4.9943 20 1 -4.3455 2.1214 4.2893 21 1 -2.9010 2.9911 6.0322 22 6 -0.2156 0.7209 3.5002 23 1 -0.8172 -0.0739 3.0593 24 6 0.9579 1.0185 2.5849 25 6 2.0400 -0.7212 -1.2492 26 9 1.5736 -0.0616 -2.3915 27 9 3.4390 -0.7206 -1.2495 28 1 -0.3634 0.3178 0.9773 29 1 -0.3634 0.6873 -0.7639 30 1 -0.3633 -1.0053 -0.2134 31 1 3.0568 1.4685 -0.3916 32 1 1.3933 2.0565 -0.6269 33 1 2.0329 1.8304 1.0187 34 1 2.9365 -0.4586 4.1437 35 1 2.4764 -1.9793 3.3473 36 1 1.3000 -1.5648 5.5669 37 1 0.1881 -1.7979 4.1909 38 1 -1.5213 -0.5986 5.5472 39 1 -0.6406 0.3576 6.7849 40 1 -1.3417 2.4058 5.8847 41 1 -2.6674 1.4271 5.1948 42 1 -1.7179 5.3070 2.3137 43 1 0.5978 1.3410 1.6079 44 1 1.5895 1.7900 3.0253 45 1 1.6767 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042227678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:32 Heat of formation + Delta-G solvation = -83.988013 kcal Electronic energy + Delta-G solvation = -29250.815609 eV Core-core repulsion = 25133.743027 eV Total energy + Delta-G solvation = -4117.072581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.98609 -46.92453 -40.88858 -38.75406 -35.82103 -35.49901 -33.09514 -31.60542 -29.84763 -29.02753 -27.61120 -26.44260 -25.04671 -24.08035 -22.99558 -21.45480 -20.77375 -19.84242 -19.11256 -17.59504 -17.42844 -17.24198 -16.72772 -16.18490 -15.46793 -15.21281 -15.17780 -14.95665 -14.29749 -14.13601 -13.95515 -13.71705 -13.41774 -13.33428 -13.25727 -12.97943 -12.73711 -12.62585 -12.37936 -12.31449 -12.26001 -11.85057 -11.77418 -11.57255 -11.32937 -11.17659 -11.08749 -10.76603 -10.61639 -10.56551 -10.16195 -10.03477 -9.52422 -9.42471 -8.99140 -8.77932 -8.63324 -7.17381 -6.39832 -3.33064 2.49990 2.81409 3.35519 3.45435 3.65103 3.66310 4.01677 4.16525 4.38714 4.55637 4.59869 4.69732 4.88914 4.92524 5.02330 5.07887 5.13019 5.31742 5.34247 5.36926 5.42758 5.51735 5.56923 5.59291 5.64462 5.66366 5.70609 5.76537 5.83789 5.90000 5.93378 6.05413 6.07709 6.16148 6.23311 6.26655 6.43261 6.48067 6.71603 6.73646 7.28516 7.52808 8.04414 8.21066 8.90827 9.47356 10.12394 11.10283 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.005057 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.691619 B = 5535.981638 C = 6840.574000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.133 4.133 3 C -0.163 4.163 4 C 0.532 3.468 5 O -0.543 6.543 6 N -0.599 5.599 7 C 0.113 3.887 8 C -0.118 4.118 9 C -0.113 4.113 10 H 0.082 0.918 11 C -0.123 4.123 12 C 0.114 3.886 13 N -0.600 5.600 14 C -0.327 4.327 15 H 0.080 0.920 16 C -0.015 4.015 17 N -0.924 5.924 18 Si 1.055 2.945 19 H -0.302 1.302 20 H -0.298 1.298 21 H -0.277 1.277 22 C 0.153 3.847 23 H 0.031 0.969 24 C 0.087 3.913 25 C 0.289 3.711 26 F -0.201 7.201 27 F -0.195 7.195 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.394 -12.079 -0.707 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.137 4.137 3 C -0.220 4.220 4 C 0.319 3.681 5 O -0.420 6.420 6 N -0.331 5.331 7 C -0.009 4.009 8 C -0.157 4.157 9 C -0.133 4.133 10 H 0.100 0.900 11 C -0.161 4.161 12 C -0.010 4.010 13 N -0.327 5.327 14 C -0.454 4.454 15 H 0.098 0.902 16 C -0.215 4.215 17 N -0.564 5.564 18 Si 0.888 3.112 19 H -0.230 1.230 20 H -0.226 1.226 21 H -0.204 1.204 22 C 0.044 3.956 23 H 0.048 0.952 24 C -0.035 4.035 25 C 0.234 3.766 26 F -0.182 7.182 27 F -0.176 7.176 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.391 -11.973 -0.061 13.572 hybrid contribution 1.345 -0.366 -0.891 1.654 sum 7.735 -12.339 -0.951 14.595 Atomic orbital electron populations 1.22266 0.89690 1.03637 1.06059 1.21812 0.99941 0.98876 0.93044 1.22306 1.02401 0.92041 1.05266 1.19952 0.79788 0.84062 0.84303 1.90702 1.38241 1.26647 1.86449 1.48106 1.55241 1.24527 1.05226 1.21587 0.96596 0.97445 0.85261 1.21795 0.97714 0.97323 0.98829 1.22313 0.97255 0.96223 0.97516 0.90008 1.22459 0.96450 0.98326 0.98878 1.22456 0.96072 0.95292 0.87211 1.44500 1.54029 1.21061 1.13129 1.20089 1.19288 0.99560 1.06465 0.90207 1.25774 0.99395 0.93891 1.02458 1.70909 1.37037 1.16707 1.31770 0.84167 0.76441 0.73972 0.76624 1.22977 1.22597 1.20375 1.21000 0.90569 0.91099 0.92904 0.95219 1.22470 0.93591 0.84223 1.03196 1.21477 0.75910 0.97017 0.82151 1.92976 1.88376 1.83904 1.52967 1.92981 1.30491 1.97513 1.96615 0.88554 0.90037 0.91573 0.91298 0.90114 0.89448 0.91740 0.89239 0.90556 0.91273 0.91530 0.91336 0.92972 0.95238 0.92781 0.87160 0.90573 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 7.81 37.16 0.29 -1.75 16 2 C -0.13 -1.77 0.46 -155.66 -0.07 -1.84 16 3 C -0.16 -2.14 7.77 37.16 0.29 -1.85 16 4 C 0.53 7.94 6.34 -10.99 -0.07 7.87 16 5 O -0.54 -9.26 14.78 5.55 0.08 -9.18 16 6 N -0.60 -8.50 3.00 -172.74 -0.52 -9.02 16 7 C 0.11 1.42 6.32 -3.53 -0.02 1.40 16 8 C -0.12 -1.39 5.72 -26.79 -0.15 -1.54 16 9 C -0.11 -1.64 2.61 -89.51 -0.23 -1.87 16 10 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 11 C -0.12 -1.84 6.54 -25.18 -0.16 -2.01 16 12 C 0.11 2.26 4.54 -1.94 -0.01 2.25 16 13 N -0.60 -13.02 3.27 -162.95 -0.53 -13.55 16 14 C -0.33 -8.38 10.18 -15.06 -0.15 -8.53 16 15 H 0.08 2.10 7.59 -52.48 -0.40 1.70 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.92 -27.44 13.70 55.49 0.76 -26.68 16 18 Si 1.05 25.05 24.71 -169.99 -4.20 20.85 16 19 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.30 -6.93 7.08 56.52 0.40 -6.53 16 21 H -0.28 -5.90 4.90 56.52 0.28 -5.62 16 22 C 0.15 2.66 2.41 -67.83 -0.16 2.49 16 23 H 0.03 0.55 7.44 -51.93 -0.39 0.16 16 24 C 0.09 1.36 2.89 -3.95 -0.01 1.35 16 25 C 0.29 3.77 3.75 37.16 0.14 3.91 16 26 F -0.20 -2.66 16.75 2.25 0.04 -2.62 16 27 F -0.19 -2.93 15.63 2.25 0.04 -2.90 16 28 H 0.10 1.41 4.30 -51.93 -0.22 1.19 16 29 H 0.08 1.00 7.82 -51.93 -0.41 0.59 16 30 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 31 H 0.07 0.89 7.30 -51.93 -0.38 0.51 16 32 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 33 H 0.09 1.18 4.76 -51.93 -0.25 0.94 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.14 6.99 -51.93 -0.36 0.78 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.84 7.98 -51.93 -0.41 0.42 16 38 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 1.09 6.56 -51.93 -0.34 0.75 16 41 H 0.03 0.62 4.49 -51.93 -0.23 0.39 16 42 H 0.26 7.67 8.73 -40.82 -0.36 7.32 16 43 H 0.11 1.74 2.81 -51.93 -0.15 1.60 16 44 H 0.08 1.24 7.99 -51.93 -0.42 0.82 16 45 H 0.11 1.28 8.09 -51.93 -0.42 0.86 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -30.21 333.18 -6.33 -36.55 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.59 Total: 2.15 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.43 Total: -0.62 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.29 Total: -49.25 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.07 Total: -5.52 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.20 Total: 20.85 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.21 -6.33 -36.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042227678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.442 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds