Wall clock time and date at job start Tue Mar 31 2020 11:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47000 * 2 1 4 4 C 1.50708 * 109.47274 * 239.99942 * 2 1 3 5 5 O 1.21278 * 119.99971 * 244.70847 * 4 2 1 6 6 N 1.34779 * 119.99493 * 64.70546 * 4 2 1 7 7 C 1.47152 * 121.22085 * 353.94511 * 6 4 2 8 8 C 1.52840 * 107.97735 * 237.28785 * 7 6 4 9 9 C 1.53090 * 110.58000 * 302.65455 * 8 7 6 10 10 H 1.09005 * 112.49103 * 289.44671 * 9 8 7 11 11 C 1.56029 * 106.39309 * 164.56637 * 9 8 7 12 12 C 1.54499 * 102.61255 * 281.61842 * 11 9 8 13 13 N 1.47433 * 107.14953 * 337.15540 * 12 11 9 14 14 C 1.36934 * 126.06039 * 178.37342 * 13 12 11 15 15 H 1.08004 * 120.00397 * 180.02562 * 14 13 12 16 16 C 1.38821 * 119.99919 * 359.97438 * 14 13 12 17 17 N 1.31622 * 119.99801 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99857 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47012 * 60.00808 * 18 16 14 20 20 H 1.48497 * 109.46855 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47374 * 300.00549 * 18 16 14 22 22 C 1.46465 * 107.88086 * 358.37578 * 13 12 11 23 23 H 1.09004 * 108.42100 * 270.10602 * 22 13 12 24 24 C 1.46763 * 121.21356 * 173.66355 * 6 4 2 25 25 C 1.52995 * 109.47492 * 119.99862 * 2 1 3 26 26 F 1.39904 * 109.47359 * 300.00117 * 25 2 1 27 27 F 1.39905 * 109.47036 * 60.00022 * 25 2 1 28 28 H 1.08993 * 109.46982 * 315.56351 * 1 2 3 29 29 H 1.08998 * 109.47208 * 75.56871 * 1 2 3 30 30 H 1.09002 * 109.46522 * 195.56439 * 1 2 3 31 31 H 1.09004 * 109.46786 * 180.35492 * 3 2 1 32 32 H 1.09006 * 109.46609 * 300.35079 * 3 2 1 33 33 H 1.08992 * 109.47013 * 60.35256 * 3 2 1 34 34 H 1.09001 * 109.75522 * 356.90460 * 7 6 4 35 35 H 1.08993 * 109.76523 * 117.66560 * 7 6 4 36 36 H 1.09000 * 109.25560 * 62.94069 * 8 7 6 37 37 H 1.09006 * 109.25450 * 182.37102 * 8 7 6 38 38 H 1.08995 * 110.77744 * 39.90572 * 11 9 8 39 39 H 1.09003 * 110.77975 * 163.34180 * 11 9 8 40 40 H 1.08995 * 109.90351 * 217.76966 * 12 11 9 41 41 H 1.08999 * 109.89927 * 96.53504 * 12 11 9 42 42 H 0.97002 * 119.99566 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.22567 * 247.78790 * 24 6 4 44 44 H 1.09003 * 109.22552 * 7.14531 * 24 6 4 45 45 H 1.08997 * 109.47670 * 179.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.6576 -1.7439 -1.1212 6 7 1.7868 -0.1972 -2.4523 7 6 0.9214 0.9803 -2.6252 8 6 -0.2170 0.5945 -3.5692 9 6 0.3380 0.0947 -4.9055 10 1 0.7827 0.8945 -5.4977 11 6 -0.8388 -0.6332 -5.6266 12 6 -0.8808 -2.0002 -4.9080 13 7 0.4536 -2.2250 -4.3229 14 6 0.8334 -3.3063 -3.5734 15 1 1.8413 -3.3712 -3.1910 16 6 -0.0776 -4.3187 -3.3043 17 7 -1.3061 -4.2394 -3.7699 18 14 0.4407 -5.7941 -2.2825 19 1 0.8764 -5.3370 -0.9385 20 1 -0.7069 -6.7259 -2.1410 21 1 1.5647 -6.4926 -2.9563 22 6 1.3011 -1.0867 -4.6852 23 1 1.7931 -1.3111 -5.6316 24 6 2.3777 -0.7887 -3.6585 25 6 2.0401 -0.7212 1.2492 26 9 1.5738 -0.0617 2.3915 27 9 1.5738 -2.0402 1.2492 28 1 -0.3633 0.7337 0.7194 29 1 -0.3633 0.2561 -0.9952 30 1 -0.3632 -0.9900 0.2758 31 1 3.1300 1.4425 -0.0064 32 1 1.6714 1.9581 -0.8869 33 1 1.6818 1.9545 0.8931 34 1 0.5137 1.2826 -1.6605 35 1 1.4960 1.7999 -3.0564 36 1 -0.8132 -0.1941 -3.1101 37 1 -0.8486 1.4653 -3.7454 38 1 -1.7739 -0.0919 -5.4833 39 1 -0.6229 -0.7603 -6.6874 40 1 -1.1096 -2.7891 -5.6245 41 1 -1.6334 -1.9821 -4.1198 42 1 -1.9425 -4.9470 -3.5821 43 1 3.1001 -0.0916 -4.0832 44 1 2.8874 -1.7145 -3.3916 45 1 3.1301 -0.7216 1.2490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042227679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:36 Heat of formation + Delta-G solvation = -92.511943 kcal Electronic energy + Delta-G solvation = -29983.588912 eV Core-core repulsion = 25866.146705 eV Total energy + Delta-G solvation = -4117.442207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.78234 -46.70161 -40.44395 -38.30542 -35.66350 -34.61510 -32.81555 -31.11913 -29.10516 -28.46591 -27.51344 -26.31601 -24.80728 -24.23015 -22.59555 -21.76335 -20.03091 -19.55467 -18.32727 -17.39078 -17.02229 -16.66871 -16.33886 -15.95742 -15.14370 -14.87887 -14.79536 -14.30777 -14.07467 -13.87111 -13.65730 -13.46042 -13.39491 -13.07104 -12.81615 -12.72274 -12.30254 -12.27307 -12.19082 -11.89437 -11.88335 -11.48871 -11.38738 -11.25995 -11.06497 -10.91630 -10.76280 -10.63151 -10.43566 -10.08878 -9.86673 -9.81025 -9.65280 -9.45784 -9.21136 -8.47818 -8.16181 -6.73023 -5.59605 -2.91438 2.95656 3.21793 3.54301 3.56867 3.65433 3.86132 4.25106 4.39845 4.53341 4.63875 4.85467 4.99341 5.05848 5.12536 5.29227 5.31817 5.41290 5.46323 5.50235 5.55367 5.64743 5.68362 5.73347 5.74363 5.75843 5.93767 5.95170 6.02391 6.11177 6.23011 6.27470 6.29189 6.42486 6.46487 6.61561 6.72010 6.91522 7.05356 7.63708 7.66932 7.80381 7.95468 8.34282 8.55566 9.33973 9.94947 10.58167 11.52638 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.007397 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.625732 B = 3784.228111 C = 5292.238878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.133 4.133 3 C -0.155 4.155 4 C 0.534 3.466 5 O -0.521 6.521 6 N -0.587 5.587 7 C 0.088 3.912 8 C -0.126 4.126 9 C -0.101 4.101 10 H 0.075 0.925 11 C -0.143 4.143 12 C 0.179 3.821 13 N -0.587 5.587 14 C -0.212 4.212 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.927 5.927 18 Si 0.903 3.097 19 H -0.281 1.281 20 H -0.294 1.294 21 H -0.287 1.287 22 C 0.154 3.846 23 H 0.025 0.975 24 C 0.113 3.887 25 C 0.287 3.713 26 F -0.207 7.207 27 F -0.186 7.186 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.044 0.956 42 H 0.249 0.751 43 H 0.055 0.945 44 H 0.095 0.905 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 16.387 3.873 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.137 4.137 3 C -0.212 4.212 4 C 0.320 3.680 5 O -0.397 6.397 6 N -0.319 5.319 7 C -0.034 4.034 8 C -0.164 4.164 9 C -0.120 4.120 10 H 0.093 0.907 11 C -0.182 4.182 12 C 0.054 3.946 13 N -0.312 5.312 14 C -0.340 4.340 15 H 0.099 0.901 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.734 3.266 19 H -0.207 1.207 20 H -0.220 1.220 21 H -0.214 1.214 22 C 0.046 3.954 23 H 0.042 0.958 24 C -0.010 4.010 25 C 0.232 3.768 26 F -0.188 7.188 27 F -0.167 7.167 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.113 0.887 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.494 15.560 4.047 16.694 hybrid contribution -0.028 -0.920 0.543 1.069 sum 4.467 14.639 4.590 15.979 Atomic orbital electron populations 1.22155 0.90631 1.04341 1.04345 1.21804 1.00115 0.97948 0.93833 1.22191 1.01975 0.92514 1.04483 1.19617 0.80208 0.84427 0.83735 1.90752 1.41168 1.21888 1.85844 1.47604 1.48496 1.30119 1.05720 1.22269 0.92399 0.87694 1.01046 1.21882 0.97331 1.01278 0.95880 1.22357 0.97251 0.96758 0.95674 0.90673 1.23161 0.96902 0.99162 0.98957 1.21214 0.87680 0.90283 0.95424 1.44262 1.07720 1.18480 1.60750 1.18986 0.96533 0.95006 1.23477 0.90082 1.24680 0.95883 0.98794 1.00860 1.69949 1.03733 1.33960 1.49890 0.86303 0.76896 0.82501 0.80920 1.20695 1.21964 1.21383 1.20771 0.91403 0.88494 0.94775 0.95752 1.21551 0.95602 0.99064 0.84793 1.21423 0.97826 0.75588 0.81913 1.92943 1.91311 1.81186 1.53360 1.93055 1.90694 1.36456 1.96489 0.91040 0.89484 0.90729 0.91609 0.89544 0.90678 0.88343 0.91747 0.89965 0.91961 0.92322 0.92749 0.94131 0.93735 0.94067 0.92651 0.88655 0.87246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 7.82 37.16 0.29 -1.92 16 2 C -0.13 -1.87 0.46 -155.66 -0.07 -1.94 16 3 C -0.15 -1.51 7.96 37.16 0.30 -1.21 16 4 C 0.53 9.60 6.40 -10.98 -0.07 9.53 16 5 O -0.52 -11.63 14.80 5.56 0.08 -11.55 16 6 N -0.59 -9.62 2.95 -173.82 -0.51 -10.13 16 7 C 0.09 1.11 3.94 -3.77 -0.01 1.09 16 8 C -0.13 -1.81 4.76 -26.77 -0.13 -1.93 16 9 C -0.10 -1.58 3.68 -88.43 -0.33 -1.90 16 10 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.14 -2.52 6.33 -24.32 -0.15 -2.67 16 12 C 0.18 4.20 4.61 -2.74 -0.01 4.18 16 13 N -0.59 -14.33 3.20 -164.16 -0.53 -14.85 16 14 C -0.21 -5.94 9.71 -15.06 -0.15 -6.09 16 15 H 0.08 2.34 6.53 -52.48 -0.34 2.00 16 16 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 17 N -0.93 -27.70 10.38 55.49 0.58 -27.13 16 18 Si 0.90 23.99 29.55 -169.99 -5.02 18.96 16 19 H -0.28 -7.68 7.11 56.52 0.40 -7.28 16 20 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 21 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 22 C 0.15 2.98 2.97 -68.07 -0.20 2.78 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 C 0.11 2.01 5.72 -4.55 -0.03 1.99 16 25 C 0.29 4.28 3.82 37.15 0.14 4.42 16 26 F -0.21 -2.85 16.53 2.25 0.04 -2.82 16 27 F -0.19 -3.62 15.56 2.25 0.04 -3.59 16 28 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 29 H 0.09 1.21 4.38 -51.93 -0.23 0.98 16 30 H 0.07 1.27 7.42 -51.93 -0.39 0.88 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.74 4.73 -51.93 -0.25 0.49 16 33 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 34 H 0.10 1.07 2.84 -51.93 -0.15 0.93 16 35 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 36 H 0.08 1.51 6.44 -51.93 -0.33 1.17 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.93 7.97 -51.93 -0.41 0.51 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.04 1.08 7.57 -51.93 -0.39 0.69 16 41 H 0.04 1.17 7.04 -51.93 -0.37 0.80 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 2.02 5.56 -51.93 -0.29 1.73 16 45 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 337.71 15.07 5.09 5.09 Total: -1.00 -33.45 337.71 -7.24 -40.69 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.48 Total: -0.71 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -0.52 Total: 6.02 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.46 Total: -52.11 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.07 Total: -6.40 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.02 Total: 18.96 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.45 -7.24 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042227679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.822 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds