Wall clock time and date at job start Tue Mar 31 2020 11:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99851 * 2 1 4 4 O 1.21278 * 120.00288 * 5.45810 * 3 2 1 5 5 C 1.50703 * 120.00026 * 185.46841 * 3 2 1 6 6 C 1.52999 * 109.47287 * 59.64524 * 5 3 2 7 7 C 1.53003 * 109.46981 * 299.64226 * 5 3 2 8 8 C 1.53001 * 109.47075 * 299.99790 * 7 5 3 9 9 C 1.52999 * 109.47426 * 300.00466 * 8 7 5 10 10 F 1.39903 * 109.46517 * 299.99956 * 9 8 7 11 11 F 1.39892 * 109.47376 * 180.02562 * 9 8 7 12 12 C 1.52996 * 109.47176 * 59.99516 * 9 8 7 13 13 C 1.52999 * 109.47617 * 300.00070 * 12 9 8 14 14 C 1.46500 * 120.00425 * 179.97438 * 2 1 3 15 15 C 1.53498 * 114.20715 * 301.72757 * 14 2 1 16 16 N 1.47066 * 87.98751 * 87.51666 * 15 14 2 17 17 C 1.36931 * 136.05861 * 207.09130 * 16 15 14 18 18 H 1.08009 * 119.99874 * 354.85227 * 17 16 15 19 19 C 1.38809 * 120.00221 * 174.85659 * 17 16 15 20 20 N 1.31627 * 119.99892 * 183.90668 * 19 17 16 21 21 Si 1.86791 * 120.00091 * 3.90091 * 19 17 16 22 22 H 1.48499 * 109.47294 * 174.63891 * 21 19 17 23 23 H 1.48502 * 109.47385 * 294.64102 * 21 19 17 24 24 H 1.48502 * 109.47144 * 54.63908 * 21 19 17 25 25 C 1.47065 * 87.88219 * 27.33969 * 16 15 14 26 26 H 1.08999 * 109.47196 * 274.74085 * 1 2 3 27 27 H 1.08999 * 109.47127 * 34.74176 * 1 2 3 28 28 H 1.09002 * 109.47007 * 154.74156 * 1 2 3 29 29 H 1.08999 * 109.47597 * 66.83909 * 6 5 3 30 30 H 1.08999 * 109.47104 * 186.84416 * 6 5 3 31 31 H 1.09008 * 109.46914 * 306.84038 * 6 5 3 32 32 H 1.08998 * 109.47211 * 60.00103 * 7 5 3 33 33 H 1.09001 * 109.46859 * 179.97438 * 7 5 3 34 34 H 1.08997 * 109.47189 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46752 * 60.00083 * 8 7 5 36 36 H 1.08998 * 109.47013 * 180.02562 * 12 9 8 37 37 H 1.09001 * 109.47198 * 60.00263 * 12 9 8 38 38 H 1.09001 * 109.46994 * 300.00317 * 13 12 9 39 39 H 1.08997 * 109.47349 * 179.97438 * 13 12 9 40 40 H 1.08999 * 113.41273 * 168.52245 * 14 2 1 41 41 H 1.09005 * 113.46603 * 332.73599 * 15 14 2 42 42 H 1.09003 * 113.46878 * 202.29915 * 15 14 2 43 43 H 0.97002 * 120.00172 * 5.00488 * 20 19 17 44 44 H 1.09004 * 113.46334 * 87.44405 * 25 16 15 45 45 H 1.09004 * 113.46452 * 217.87536 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5366 2.2151 0.0999 5 6 3.6407 1.1702 -0.1244 6 6 4.0449 0.5024 -1.4403 7 6 4.2510 0.3989 1.0476 8 6 3.8469 1.0668 2.3635 9 6 4.3572 2.5091 2.3811 10 9 5.7514 2.5118 2.2657 11 9 3.9882 3.1196 3.5845 12 6 3.7469 3.2804 1.2092 13 6 4.1511 2.6126 -0.1067 14 6 2.1976 -1.2687 0.0006 15 6 1.8748 -2.1814 1.1918 16 7 0.7631 -2.7321 0.4020 17 6 -0.4468 -3.3129 0.6739 18 1 -0.7267 -3.5247 1.6953 19 6 -1.3134 -3.6295 -0.3632 20 7 -2.5071 -4.1165 -0.0978 21 14 -0.7858 -3.3642 -2.1352 22 1 -1.8295 -3.8967 -3.0475 23 1 -0.6037 -1.9118 -2.3855 24 1 0.4956 -4.0734 -2.3816 25 6 1.5255 -2.3903 -0.8083 26 1 -0.3633 0.0849 1.0241 27 1 -0.3633 0.8445 -0.5856 28 1 -0.3633 -0.9294 -0.4385 29 1 3.7136 1.1177 -2.2768 30 1 5.1290 0.3950 -1.4752 31 1 3.5800 -0.4813 -1.5062 32 1 3.8875 -0.6286 1.0350 33 1 5.3373 0.4007 0.9574 34 1 4.2813 0.5170 3.1984 35 1 2.7607 1.0646 2.4534 36 1 4.1108 4.3077 1.2215 37 1 2.6606 3.2782 1.2991 38 1 5.2373 2.6147 -0.1966 39 1 3.7159 3.1618 -0.9416 40 1 3.2630 -1.1536 -0.1985 41 1 1.5495 -1.6382 2.0791 42 1 2.6576 -2.9091 1.4057 43 1 -2.8091 -4.1863 0.8214 44 1 2.2162 -3.1732 -1.1217 45 1 0.9027 -2.0253 -1.6250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043123813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:40 Heat of formation + Delta-G solvation = -52.003445 kcal Electronic energy + Delta-G solvation = -29533.660434 eV Core-core repulsion = 25417.974808 eV Total energy + Delta-G solvation = -4115.685626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.01482 -46.99519 -41.20179 -38.78509 -36.89160 -34.29416 -32.35159 -32.26022 -31.30747 -28.35472 -26.66999 -26.34252 -25.49987 -23.89049 -23.08498 -21.97463 -21.08167 -20.09394 -18.57970 -17.56243 -17.46328 -17.01654 -16.37363 -16.28550 -15.87615 -15.53830 -14.79576 -14.65785 -14.33768 -14.20035 -13.86300 -13.67453 -13.53999 -13.32903 -13.17549 -13.04313 -12.91798 -12.69146 -12.47445 -12.39178 -12.07450 -11.88582 -11.70831 -11.65875 -11.38980 -11.32626 -11.13228 -11.06815 -10.77668 -10.60461 -10.47660 -10.07538 -9.47868 -9.31169 -9.26236 -9.00632 -8.26381 -7.27868 -6.41206 -3.35669 2.68909 3.17380 3.25343 3.31430 3.53127 3.69833 3.97971 4.15880 4.23122 4.42843 4.46065 4.50143 4.54775 4.80405 4.83513 4.89572 4.93849 5.14016 5.17440 5.35700 5.41337 5.45638 5.51245 5.56452 5.59958 5.62913 5.67325 5.81176 5.86558 5.93940 5.98865 5.99981 6.01439 6.07596 6.13923 6.18867 6.23411 6.37746 6.62565 6.81022 6.94681 7.71299 8.12902 8.32222 8.85828 9.36833 10.20666 11.09861 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.004386 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.430550 B = 6381.791308 C = 6584.971224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.574 5.574 3 C 0.521 3.479 4 O -0.543 6.543 5 C -0.084 4.084 6 C -0.156 4.156 7 C -0.125 4.125 8 C -0.159 4.159 9 C 0.288 3.712 10 F -0.203 7.203 11 F -0.204 7.204 12 C -0.170 4.170 13 C -0.088 4.088 14 C 0.068 3.932 15 C 0.108 3.892 16 N -0.621 5.621 17 C -0.302 4.302 18 H 0.083 0.917 19 C -0.022 4.022 20 N -0.931 5.931 21 Si 1.066 2.934 22 H -0.294 1.294 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.076 3.924 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.262 0.738 44 H 0.056 0.944 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.967 10.996 -0.453 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.303 5.303 3 C 0.309 3.691 4 O -0.422 6.422 5 C -0.087 4.087 6 C -0.213 4.213 7 C -0.163 4.163 8 C -0.197 4.197 9 C 0.252 3.748 10 F -0.185 7.185 11 F -0.185 7.185 12 C -0.208 4.208 13 C -0.126 4.126 14 C -0.038 4.038 15 C -0.020 4.020 16 N -0.349 5.349 17 C -0.428 4.428 18 H 0.100 0.900 19 C -0.221 4.221 20 N -0.573 5.573 21 Si 0.900 3.100 22 H -0.222 1.222 23 H -0.218 1.218 24 H -0.216 1.216 25 C -0.050 4.050 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.900 11.207 -1.877 19.543 hybrid contribution 0.582 -0.002 1.896 1.983 sum 16.482 11.205 0.019 19.930 Atomic orbital electron populations 1.21830 0.77781 1.03863 1.02030 1.47388 1.07495 1.04452 1.71003 1.20374 0.89237 0.83295 0.76151 1.90583 1.70200 1.30937 1.50451 1.20884 0.92485 0.97780 0.97590 1.22165 1.02439 1.01773 0.94916 1.22070 1.02093 1.00711 0.91379 1.22506 1.03889 0.92872 1.00429 1.21183 0.76099 0.94732 0.82780 1.92965 1.31822 1.97483 1.96181 1.92992 1.91368 1.85206 1.48974 1.22803 1.05661 0.99552 0.92777 1.21318 1.00961 0.93004 0.97275 1.23298 0.95907 0.84264 1.00297 1.22816 0.91047 0.93203 0.94930 1.46168 1.15011 1.72704 1.01065 1.20122 0.88954 1.38281 0.95486 0.89963 1.25628 0.94255 0.98533 1.03655 1.70904 1.17932 1.46556 1.21934 0.83812 0.74599 0.75315 0.76289 1.22158 1.21818 1.21640 1.23317 0.94458 0.93860 0.93326 0.93008 0.92395 0.87985 0.91598 0.91056 0.90317 0.88105 0.89639 0.89102 0.88785 0.89945 0.85976 0.90508 0.89918 0.86046 0.93122 0.93338 0.92733 0.92661 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.63 9.52 59.85 0.57 2.20 16 2 N -0.57 -9.21 3.11 -173.56 -0.54 -9.75 16 3 C 0.52 7.70 4.95 -10.98 -0.05 7.65 16 4 O -0.54 -9.41 13.36 5.56 0.07 -9.33 16 5 C -0.08 -0.92 0.50 -155.66 -0.08 -1.00 16 6 C -0.16 -1.43 8.11 37.16 0.30 -1.13 16 7 C -0.13 -1.23 4.25 -26.73 -0.11 -1.35 16 8 C -0.16 -1.78 5.23 -26.73 -0.14 -1.92 16 9 C 0.29 3.47 2.10 -26.73 -0.06 3.42 16 10 F -0.20 -2.46 16.02 2.25 0.04 -2.43 16 11 F -0.20 -2.82 17.06 2.25 0.04 -2.78 16 12 C -0.17 -1.99 5.16 -26.73 -0.14 -2.13 16 13 C -0.09 -0.91 4.25 -26.73 -0.11 -1.02 16 14 C 0.07 1.00 2.21 -67.68 -0.15 0.85 16 15 C 0.11 1.83 7.83 -8.52 -0.07 1.76 16 16 N -0.62 -13.50 2.37 -184.63 -0.44 -13.93 16 17 C -0.30 -8.00 10.48 -15.06 -0.16 -8.16 16 18 H 0.08 2.35 8.05 -52.48 -0.42 1.93 16 19 C -0.02 -0.60 5.45 -17.43 -0.09 -0.69 16 20 N -0.93 -28.08 13.70 55.49 0.76 -27.32 16 21 Si 1.07 25.09 24.14 -169.99 -4.10 20.99 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.31 5.86 56.52 0.33 -5.98 16 24 H -0.29 -6.34 6.70 56.52 0.38 -5.96 16 25 C 0.08 1.40 5.01 -8.38 -0.04 1.36 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.06 7.65 -51.93 -0.40 0.66 16 28 H 0.10 2.19 3.52 -51.93 -0.18 2.01 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.76 4.90 -51.92 -0.25 0.51 16 32 H 0.10 0.98 4.14 -51.93 -0.22 0.76 16 33 H 0.09 0.71 7.80 -51.93 -0.41 0.31 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.21 7.22 -51.93 -0.37 0.84 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.12 1.70 5.50 -51.93 -0.29 1.42 16 38 H 0.08 0.68 7.80 -51.93 -0.41 0.27 16 39 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.12 1.37 2.94 -51.93 -0.15 1.21 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.26 7.86 8.73 -40.82 -0.36 7.50 16 44 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 45 H 0.06 1.21 3.45 -51.93 -0.18 1.03 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -30.66 329.37 -5.86 -36.52 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.32 Total: 3.23 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.33 Total: -0.16 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.22 Total: -51.00 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.07 Total: -5.20 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -4.10 Total: 20.99 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.66 -5.86 -36.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043123813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.485 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds