Wall clock time and date at job start Tue Mar 31 2020 11:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99851 * 2 1 4 4 O 1.21278 * 120.00288 * 5.45810 * 3 2 1 5 5 C 1.50703 * 120.00026 * 185.46841 * 3 2 1 6 6 C 1.52999 * 109.47287 * 59.64524 * 5 3 2 7 7 C 1.53003 * 109.46981 * 299.64226 * 5 3 2 8 8 C 1.53001 * 109.47075 * 299.99790 * 7 5 3 9 9 C 1.52999 * 109.47426 * 300.00466 * 8 7 5 10 10 F 1.39903 * 109.46517 * 299.99956 * 9 8 7 11 11 F 1.39892 * 109.47376 * 180.02562 * 9 8 7 12 12 C 1.52996 * 109.47176 * 59.99516 * 9 8 7 13 13 C 1.52999 * 109.47617 * 300.00070 * 12 9 8 14 14 C 1.46500 * 120.00425 * 179.97438 * 2 1 3 15 15 C 1.53498 * 114.20715 * 301.72757 * 14 2 1 16 16 N 1.47066 * 87.98751 * 87.51666 * 15 14 2 17 17 C 1.36931 * 136.05861 * 207.09130 * 16 15 14 18 18 H 1.08009 * 119.99874 * 354.85227 * 17 16 15 19 19 C 1.38809 * 120.00221 * 174.85659 * 17 16 15 20 20 N 1.31627 * 119.99892 * 183.90668 * 19 17 16 21 21 Si 1.86791 * 120.00091 * 3.90091 * 19 17 16 22 22 H 1.48499 * 109.47294 * 174.63891 * 21 19 17 23 23 H 1.48502 * 109.47385 * 294.64102 * 21 19 17 24 24 H 1.48502 * 109.47144 * 54.63908 * 21 19 17 25 25 C 1.47065 * 87.88219 * 27.33969 * 16 15 14 26 26 H 1.08999 * 109.47196 * 274.74085 * 1 2 3 27 27 H 1.08999 * 109.47127 * 34.74176 * 1 2 3 28 28 H 1.09002 * 109.47007 * 154.74156 * 1 2 3 29 29 H 1.08999 * 109.47597 * 66.83909 * 6 5 3 30 30 H 1.08999 * 109.47104 * 186.84416 * 6 5 3 31 31 H 1.09008 * 109.46914 * 306.84038 * 6 5 3 32 32 H 1.08998 * 109.47211 * 60.00103 * 7 5 3 33 33 H 1.09001 * 109.46859 * 179.97438 * 7 5 3 34 34 H 1.08997 * 109.47189 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46752 * 60.00083 * 8 7 5 36 36 H 1.08998 * 109.47013 * 180.02562 * 12 9 8 37 37 H 1.09001 * 109.47198 * 60.00263 * 12 9 8 38 38 H 1.09001 * 109.46994 * 300.00317 * 13 12 9 39 39 H 1.08997 * 109.47349 * 179.97438 * 13 12 9 40 40 H 1.08999 * 113.41273 * 168.52245 * 14 2 1 41 41 H 1.09005 * 113.46603 * 332.73599 * 15 14 2 42 42 H 1.09003 * 113.46878 * 202.29915 * 15 14 2 43 43 H 0.97002 * 120.00172 * 5.00488 * 20 19 17 44 44 H 1.09004 * 113.46334 * 87.44405 * 25 16 15 45 45 H 1.09004 * 113.46452 * 217.87536 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5366 2.2151 0.0999 5 6 3.6407 1.1702 -0.1244 6 6 4.0449 0.5024 -1.4403 7 6 4.2510 0.3989 1.0476 8 6 3.8469 1.0668 2.3635 9 6 4.3572 2.5091 2.3811 10 9 5.7514 2.5118 2.2657 11 9 3.9882 3.1196 3.5845 12 6 3.7469 3.2804 1.2092 13 6 4.1511 2.6126 -0.1067 14 6 2.1976 -1.2687 0.0006 15 6 1.8748 -2.1814 1.1918 16 7 0.7631 -2.7321 0.4020 17 6 -0.4468 -3.3129 0.6739 18 1 -0.7267 -3.5247 1.6953 19 6 -1.3134 -3.6295 -0.3632 20 7 -2.5071 -4.1165 -0.0978 21 14 -0.7858 -3.3642 -2.1352 22 1 -1.8295 -3.8967 -3.0475 23 1 -0.6037 -1.9118 -2.3855 24 1 0.4956 -4.0734 -2.3816 25 6 1.5255 -2.3903 -0.8083 26 1 -0.3633 0.0849 1.0241 27 1 -0.3633 0.8445 -0.5856 28 1 -0.3633 -0.9294 -0.4385 29 1 3.7136 1.1177 -2.2768 30 1 5.1290 0.3950 -1.4752 31 1 3.5800 -0.4813 -1.5062 32 1 3.8875 -0.6286 1.0350 33 1 5.3373 0.4007 0.9574 34 1 4.2813 0.5170 3.1984 35 1 2.7607 1.0646 2.4534 36 1 4.1108 4.3077 1.2215 37 1 2.6606 3.2782 1.2991 38 1 5.2373 2.6147 -0.1966 39 1 3.7159 3.1618 -0.9416 40 1 3.2630 -1.1536 -0.1985 41 1 1.5495 -1.6382 2.0791 42 1 2.6576 -2.9091 1.4057 43 1 -2.8091 -4.1863 0.8214 44 1 2.2162 -3.1732 -1.1217 45 1 0.9027 -2.0253 -1.6250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043123813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:39 Heat of formation + Delta-G solvation = -71.722105 kcal Electronic energy + Delta-G solvation = -29534.515499 eV Core-core repulsion = 25417.974808 eV Total energy + Delta-G solvation = -4116.540692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.98104 -47.97126 -42.34804 -40.12850 -37.95578 -35.73361 -34.30106 -33.17834 -32.17971 -30.06585 -28.07741 -27.26380 -26.81100 -25.20339 -24.12668 -23.23173 -22.14571 -21.43284 -20.03454 -19.19335 -18.43650 -18.13105 -17.63534 -17.27531 -17.15786 -16.70469 -16.16572 -15.83845 -15.78636 -15.27919 -15.19470 -15.05713 -14.65241 -14.56161 -14.30582 -14.15348 -13.88487 -13.79348 -13.52107 -13.43398 -13.21670 -13.13821 -13.06108 -12.82358 -12.64016 -12.48073 -12.39149 -12.28047 -11.99436 -11.92441 -11.61269 -11.26580 -11.10644 -11.06157 -10.86484 -10.48812 -9.62647 -9.13577 -8.58806 -5.42678 1.36896 1.47104 1.53798 1.66789 1.94606 2.55397 2.78104 2.98570 3.09422 3.20731 3.24284 3.35410 3.48407 3.49913 3.70853 3.92383 4.01644 4.08282 4.15794 4.20317 4.31622 4.48011 4.56666 4.60235 4.60925 4.66521 4.69651 4.74452 4.78076 4.79689 4.82371 4.92218 4.97423 5.05236 5.06146 5.08123 5.17248 5.22843 5.29342 5.39375 5.45579 5.98617 6.48615 6.73400 7.12540 7.36337 8.28773 8.95251 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.004386 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.430550 B = 6381.791308 C = 6584.971224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.581 5.581 3 C 0.519 3.481 4 O -0.572 6.572 5 C -0.079 4.079 6 C -0.155 4.155 7 C -0.122 4.122 8 C -0.160 4.160 9 C 0.286 3.714 10 F -0.199 7.199 11 F -0.219 7.219 12 C -0.171 4.171 13 C -0.085 4.085 14 C 0.094 3.906 15 C 0.105 3.895 16 N -0.653 5.653 17 C -0.275 4.275 18 H 0.044 0.956 19 C -0.082 4.082 20 N -0.977 5.977 21 Si 1.103 2.897 22 H -0.314 1.314 23 H -0.268 1.268 24 H -0.256 1.256 25 C 0.068 3.932 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.173 0.827 41 H 0.038 0.962 42 H 0.083 0.917 43 H 0.245 0.755 44 H 0.086 0.914 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.686 11.568 -1.952 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.310 5.310 3 C 0.310 3.690 4 O -0.452 6.452 5 C -0.082 4.082 6 C -0.212 4.212 7 C -0.158 4.158 8 C -0.198 4.198 9 C 0.251 3.749 10 F -0.180 7.180 11 F -0.200 7.200 12 C -0.208 4.208 13 C -0.122 4.122 14 C -0.011 4.011 15 C -0.021 4.021 16 N -0.382 5.382 17 C -0.402 4.402 18 H 0.062 0.938 19 C -0.273 4.273 20 N -0.623 5.623 21 Si 0.931 3.069 22 H -0.243 1.243 23 H -0.195 1.195 24 H -0.181 1.181 25 C -0.057 4.057 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.190 0.810 41 H 0.056 0.944 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.104 0.896 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 20.709 11.810 -3.352 24.074 hybrid contribution -0.841 -0.056 2.529 2.665 sum 19.868 11.755 -0.823 23.099 Atomic orbital electron populations 1.21486 0.80294 1.02380 1.00500 1.47486 1.06227 1.05733 1.71593 1.21230 0.91068 0.82140 0.74602 1.90586 1.71363 1.31971 1.51276 1.20975 0.88815 0.98897 0.99493 1.22213 1.04711 1.01069 0.93224 1.22132 1.03885 1.00189 0.89641 1.22513 1.02416 0.92684 1.02161 1.21291 0.76229 0.95189 0.82230 1.92967 1.31442 1.97498 1.96120 1.92966 1.91551 1.85558 1.49952 1.22756 1.03918 1.00459 0.93714 1.21363 1.02493 0.92305 0.96057 1.23334 0.97770 0.82478 0.97476 1.23115 0.90016 0.93948 0.95052 1.46156 1.15118 1.72536 1.04434 1.19863 0.91198 1.35621 0.93565 0.93803 1.26852 0.93867 0.99128 1.07499 1.71015 1.20019 1.50588 1.20646 0.83408 0.75091 0.76751 0.71669 1.24333 1.19531 1.18066 1.23609 0.94355 0.95699 0.92023 0.94965 0.92434 0.90452 0.91670 0.87562 0.90563 0.87616 0.86506 0.87799 0.91204 0.89134 0.88702 0.87769 0.90154 0.81029 0.94353 0.89938 0.94619 0.89620 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.68 9.52 127.77 1.22 4.90 16 2 N -0.58 -17.59 3.11 -821.40 -2.56 -20.15 16 3 C 0.52 14.27 4.95 87.66 0.43 14.70 16 4 O -0.57 -19.51 13.36 -3.02 -0.04 -19.55 16 5 C -0.08 -1.39 0.50 -52.92 -0.03 -1.41 16 6 C -0.16 -1.93 8.11 71.98 0.58 -1.35 16 7 C -0.12 -1.78 4.25 30.60 0.13 -1.65 16 8 C -0.16 -3.14 5.23 30.59 0.16 -2.98 16 9 C 0.29 6.23 2.10 30.59 0.06 6.30 16 10 F -0.20 -4.07 16.02 44.97 0.72 -3.35 16 11 F -0.22 -5.82 17.06 44.97 0.77 -5.06 16 12 C -0.17 -3.66 5.16 30.59 0.16 -3.50 16 13 C -0.08 -1.43 4.25 30.60 0.13 -1.30 16 14 C 0.09 2.41 2.21 45.55 0.10 2.51 16 15 C 0.10 3.27 7.83 83.17 0.65 3.92 16 16 N -0.65 -27.63 2.37 -738.06 -1.75 -29.38 16 17 C -0.27 -14.92 10.48 84.03 0.88 -14.04 16 18 H 0.04 2.66 8.05 -2.91 -0.02 2.63 16 19 C -0.08 -4.68 5.45 84.86 0.46 -4.22 16 20 N -0.98 -61.87 13.70 21.65 0.30 -61.57 16 21 Si 1.10 50.59 24.14 68.60 1.66 52.24 16 22 H -0.31 -15.35 7.11 99.48 0.71 -14.65 16 23 H -0.27 -11.18 5.86 99.48 0.58 -10.60 16 24 H -0.26 -10.19 6.70 99.48 0.67 -9.53 16 25 C 0.07 2.25 5.01 83.26 0.42 2.67 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 2.14 7.65 -2.39 -0.02 2.12 16 28 H 0.08 3.35 3.52 -2.39 -0.01 3.34 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 1.00 4.90 -2.38 -0.01 0.99 16 32 H 0.11 1.44 4.14 -2.39 -0.01 1.43 16 33 H 0.12 1.12 7.80 -2.39 -0.02 1.10 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.73 7.22 -2.39 -0.02 1.71 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 37 H 0.09 2.62 5.50 -2.39 -0.01 2.60 16 38 H 0.10 1.26 7.80 -2.39 -0.02 1.24 16 39 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 40 H 0.17 2.81 2.94 -2.39 -0.01 2.80 16 41 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.24 15.69 8.73 -92.71 -0.81 14.88 16 44 H 0.09 2.42 8.08 -2.39 -0.02 2.40 16 45 H 0.05 1.79 3.45 -2.38 -0.01 1.78 16 Total: -1.00 -72.24 329.37 5.27 -66.97 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.82 Total: 15.30 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.36 Total: 4.55 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -4.01 Total: -111.10 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.04 Total: -19.55 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 1.49 Total: -8.41 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.66 Total: 52.24 kcal Total: -72.24 5.27 -66.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043123813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.756 kcal (2) G-P(sol) polarization free energy of solvation -72.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds