Wall clock time and date at job start Tue Mar 31 2020 11:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.45844 * 2 1 4 4 C 1.34781 * 119.99843 * 60.01177 * 3 2 1 5 5 O 1.21281 * 120.00020 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00140 * 179.97438 * 4 3 2 7 7 H 1.08997 * 110.05610 * 301.41109 * 6 4 3 8 8 C 1.54263 * 110.03535 * 62.82906 * 6 4 3 9 9 C 1.54887 * 104.19738 * 142.89372 * 8 6 4 10 10 C 1.54884 * 102.74917 * 322.05791 * 9 8 6 11 11 F 1.39892 * 110.48840 * 279.26322 * 10 9 8 12 12 F 1.39905 * 110.48311 * 156.61738 * 10 9 8 13 13 C 1.53869 * 110.03388 * 179.97438 * 6 4 3 14 14 C 1.53033 * 109.46141 * 119.98258 * 2 1 3 15 15 C 1.53163 * 109.32540 * 181.38319 * 14 2 1 16 16 N 1.46932 * 108.76940 * 305.35414 * 15 14 2 17 17 C 1.36936 * 120.62835 * 233.63355 * 16 15 14 18 18 H 1.07998 * 119.99749 * 151.80975 * 17 16 15 19 19 C 1.38813 * 119.99909 * 331.80890 * 17 16 15 20 20 N 1.31617 * 120.00438 * 343.07731 * 19 17 16 21 21 Si 1.86806 * 119.99785 * 163.08438 * 19 17 16 22 22 H 1.48500 * 109.47265 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47074 * 119.99702 * 21 19 17 24 24 H 1.48502 * 109.46723 * 239.99654 * 21 19 17 25 25 C 1.46923 * 118.73839 * 53.60869 * 16 15 14 26 26 C 1.53046 * 109.45325 * 240.03517 * 2 1 3 27 27 H 1.09000 * 109.47183 * 59.99115 * 1 2 3 28 28 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46653 * 299.98875 * 1 2 3 30 30 H 0.96998 * 120.00741 * 240.00148 * 3 2 1 31 31 H 1.09002 * 110.48944 * 261.57874 * 8 6 4 32 32 H 1.09004 * 110.48583 * 24.08310 * 8 6 4 33 33 H 1.09004 * 110.75132 * 80.37695 * 9 8 6 34 34 H 1.08999 * 110.75424 * 203.55711 * 9 8 6 35 35 H 1.09000 * 110.03117 * 0.02562 * 13 6 4 36 36 H 1.09001 * 110.03309 * 121.42746 * 13 6 4 37 37 H 1.08999 * 109.49572 * 301.31812 * 14 2 1 38 38 H 1.08999 * 109.50206 * 61.41585 * 14 2 1 39 39 H 1.09006 * 109.58916 * 185.56583 * 15 14 2 40 40 H 1.09002 * 109.71170 * 65.21003 * 15 14 2 41 41 H 0.96995 * 120.00553 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.58379 * 186.60832 * 25 16 15 43 43 H 1.08995 * 109.70352 * 66.24980 * 25 16 15 44 44 H 1.09000 * 109.49405 * 298.57775 * 26 2 1 45 45 H 1.08997 * 109.50179 * 58.67400 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6925 2.2110 1.0110 5 8 0.9951 1.8142 1.9205 6 6 2.1949 3.6317 1.0114 7 1 3.2845 3.6429 0.9862 8 6 1.6305 4.3922 -0.2063 9 6 1.3586 5.8196 0.3299 10 6 0.8347 5.5524 1.7628 11 9 -0.5188 5.2003 1.7316 12 9 1.0312 6.6758 2.5733 13 6 1.6886 4.3696 2.2631 14 6 2.0399 -0.7211 1.2498 15 6 3.5712 -0.6891 1.2642 16 7 4.0676 -1.2494 -0.0001 17 6 4.9753 -2.2747 -0.0001 18 1 5.0025 -2.9717 -0.8246 19 6 5.8603 -2.4182 1.0596 20 7 6.0657 -1.4146 1.8861 21 14 6.7599 -4.0357 1.3127 22 1 6.3565 -4.9972 0.2555 23 1 8.2249 -3.8041 1.2389 24 1 6.4132 -4.5916 2.6454 25 6 3.5713 -0.6889 -1.2643 26 6 2.0398 -0.7208 -1.2502 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 2.5756 1.6988 -0.7274 31 1 2.3641 4.4206 -1.0120 32 1 0.7056 3.9291 -0.5502 33 1 2.2786 6.4036 0.3575 34 1 0.6023 6.3214 -0.2736 35 1 1.0798 3.6999 2.8705 36 1 2.5325 4.7388 2.8458 37 1 1.6576 -0.2211 2.1397 38 1 1.6977 -1.7559 1.2380 39 1 3.9413 -1.2852 2.0984 40 1 3.9164 0.3395 1.3686 41 1 6.6844 -1.5147 2.6264 42 1 3.9415 -1.2849 -2.0985 43 1 3.9144 0.3403 -1.3698 44 1 1.6975 -1.7556 -1.2385 45 1 1.6573 -0.2207 -2.1399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045457393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:06 Heat of formation + Delta-G solvation = -128.173961 kcal Electronic energy + Delta-G solvation = -28456.102171 eV Core-core repulsion = 24337.113543 eV Total energy + Delta-G solvation = -4118.988628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.95052 -47.08373 -40.36138 -38.03882 -36.35308 -34.43118 -32.05467 -30.95062 -29.91818 -29.41864 -28.06164 -27.44476 -24.12635 -22.79700 -22.26260 -21.45442 -20.88694 -19.81322 -18.67314 -17.90916 -17.37236 -16.86563 -16.61951 -15.94515 -15.04587 -14.88835 -14.79706 -14.26786 -14.16392 -14.10571 -13.79000 -13.47716 -13.40254 -13.33386 -13.27288 -13.04345 -12.52071 -12.32001 -12.07373 -11.90855 -11.80698 -11.62203 -11.58684 -11.41255 -11.18936 -11.01866 -10.94066 -10.74989 -10.73492 -10.37230 -10.26092 -9.98008 -9.73266 -9.57735 -9.09059 -8.60237 -8.47807 -6.68151 -5.80454 -3.23522 2.87653 3.35256 3.36064 3.43955 3.45578 3.58930 3.80816 3.92984 4.28131 4.47860 4.74572 4.85439 4.93944 4.98121 5.08418 5.20601 5.33444 5.34682 5.38685 5.45693 5.51097 5.54184 5.58873 5.76961 5.82045 5.93677 5.96730 6.02056 6.11155 6.18286 6.36007 6.44693 6.51421 6.64281 6.71909 6.80190 6.90245 7.08011 7.39708 7.68511 7.78349 7.87823 8.43499 8.53779 9.19822 9.83190 10.39598 11.27543 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021098 B = 0.003570 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.799383 B = 7840.979618 C = 8385.064593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.184 3.816 3 N -0.706 5.706 4 C 0.523 3.477 5 O -0.535 6.535 6 C -0.114 4.114 7 H 0.112 0.888 8 C -0.114 4.114 9 C -0.156 4.156 10 C 0.278 3.722 11 F -0.193 7.193 12 F -0.200 7.200 13 C -0.156 4.156 14 C -0.151 4.151 15 C 0.178 3.822 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.146 3.854 26 C -0.137 4.137 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.397 0.603 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.016 0.984 41 H 0.253 0.747 42 H 0.055 0.945 43 H 0.013 0.987 44 H 0.074 0.926 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 13.135 -5.479 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.099 3.901 3 N -0.357 5.357 4 C 0.308 3.692 5 O -0.412 6.412 6 C -0.135 4.135 7 H 0.130 0.870 8 C -0.151 4.151 9 C -0.194 4.194 10 C 0.242 3.758 11 F -0.174 7.174 12 F -0.181 7.181 13 C -0.194 4.194 14 C -0.191 4.191 15 C 0.053 3.947 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.019 3.981 26 C -0.177 4.177 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.232 0.768 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.034 0.966 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.093 0.907 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.899 12.831 -4.675 16.866 hybrid contribution 0.748 -0.554 -0.055 0.932 sum -9.151 12.277 -4.731 16.026 Atomic orbital electron populations 1.22227 0.95437 1.01868 1.02298 1.20277 0.92543 0.80156 0.97166 1.46031 1.52854 1.12073 1.24707 1.20119 0.80218 0.86840 0.82006 1.90610 1.38264 1.76609 1.35722 1.21858 1.02924 0.93145 0.95583 0.87005 1.22336 1.02557 0.93310 0.96945 1.23444 1.03585 0.99188 0.93201 1.21913 0.78758 0.83808 0.91333 1.93021 1.35167 1.92114 1.97049 1.92995 1.94906 1.54489 1.75679 1.23105 1.01305 0.96104 0.98878 1.22575 1.00769 0.99124 0.96657 1.20672 0.87238 0.96884 0.89939 1.44067 1.48314 1.39577 0.99399 1.19213 1.09650 1.02845 1.06660 0.91731 1.25034 0.97200 0.97368 0.99886 1.70036 1.37388 1.28990 1.18122 0.86259 0.79180 0.83715 0.77817 1.20262 1.21752 1.21560 1.20853 0.90450 0.96149 0.90619 1.22337 0.99651 1.00542 0.95154 0.93549 0.92299 0.90772 0.76831 0.89144 0.90055 0.87971 0.88908 0.86433 0.88169 0.91048 0.92257 0.89873 0.96618 0.93714 0.92682 0.96908 0.90741 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 8.40 37.16 0.31 -2.06 16 2 C 0.18 2.98 0.66 -131.78 -0.09 2.89 16 3 N -0.71 -10.20 4.05 -47.57 -0.19 -10.39 16 4 C 0.52 7.76 6.41 -10.98 -0.07 7.69 16 5 O -0.53 -9.67 11.43 5.56 0.06 -9.60 16 6 C -0.11 -1.26 3.30 -90.66 -0.30 -1.56 16 7 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 8 C -0.11 -0.95 6.31 -25.08 -0.16 -1.11 16 9 C -0.16 -1.26 6.49 -24.74 -0.16 -1.42 16 10 C 0.28 3.12 2.49 -25.10 -0.06 3.06 16 11 F -0.19 -2.59 17.17 2.25 0.04 -2.56 16 12 F -0.20 -2.41 17.16 2.25 0.04 -2.38 16 13 C -0.16 -1.82 6.01 -25.64 -0.15 -1.97 16 14 C -0.15 -3.01 4.66 -26.63 -0.12 -3.14 16 15 C 0.18 4.21 5.04 -3.72 -0.02 4.20 16 16 N -0.59 -14.16 2.99 -172.33 -0.52 -14.68 16 17 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 18 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 19 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 20 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16 21 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.15 2.79 6.24 -3.71 -0.02 2.77 16 26 C -0.14 -2.16 4.96 -26.61 -0.13 -2.29 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.23 6.17 -51.93 -0.32 0.91 16 30 H 0.40 5.00 7.27 -40.82 -0.30 4.70 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.12 1.66 6.37 -51.93 -0.33 1.33 16 36 H 0.10 1.02 8.11 -51.93 -0.42 0.60 16 37 H 0.07 1.48 6.20 -51.93 -0.32 1.16 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 2.27 6.06 -51.93 -0.31 1.96 16 40 H 0.02 0.39 7.75 -51.93 -0.40 -0.01 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 43 H 0.01 0.24 6.94 -51.93 -0.36 -0.12 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -31.08 350.49 -7.84 -38.93 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.94 Total: 4.10 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -1.21 Total: 0.11 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.09 Total: -50.35 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.06 Total: -9.60 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.08 Total: -4.93 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.08 -7.84 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045457393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.247 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds