Wall clock time and date at job start Tue Mar 31 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47342 * 2 1 4 4 C 1.50698 * 109.47291 * 120.00270 * 2 1 3 5 5 O 1.21285 * 119.99836 * 118.39023 * 4 2 1 6 6 N 1.35003 * 119.99868 * 298.39153 * 4 2 1 7 7 C 1.44677 * 119.97541 * 174.83788 * 6 4 2 8 8 C 1.51308 * 113.57015 * 266.81934 * 7 6 4 9 9 C 1.51126 * 114.55263 * 296.39285 * 8 7 6 10 10 H 1.09702 * 110.78053 * 178.15543 * 9 8 7 11 11 C 1.54178 * 108.53495 * 300.17227 * 9 8 7 12 12 C 1.54034 * 104.57108 * 91.00162 * 11 9 8 13 13 C 1.52096 * 105.45568 * 13.61018 * 12 11 9 14 14 H 1.09376 * 108.31996 * 121.45038 * 13 12 11 15 15 C 1.49273 * 119.90164 * 354.38552 * 6 4 2 16 16 N 1.47785 * 109.58502 * 3.55666 * 13 12 11 17 17 C 1.37103 * 127.15768 * 159.64059 * 16 13 12 18 18 H 1.08008 * 120.00067 * 156.33487 * 17 16 13 19 19 C 1.38815 * 120.00613 * 336.33319 * 17 16 13 20 20 N 1.31621 * 119.99712 * 32.80382 * 19 17 16 21 21 Si 1.86788 * 120.00397 * 212.80274 * 19 17 16 22 22 H 1.48501 * 109.47281 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47043 * 120.00015 * 21 19 17 24 24 H 1.48507 * 109.47494 * 239.99896 * 21 19 17 25 25 C 1.53000 * 109.47080 * 240.00263 * 2 1 3 26 26 F 1.39900 * 109.47459 * 59.99792 * 25 2 1 27 27 F 1.39900 * 109.47151 * 179.97438 * 25 2 1 28 28 H 1.09006 * 109.47027 * 292.27653 * 1 2 3 29 29 H 1.09005 * 109.47156 * 52.27535 * 1 2 3 30 30 H 1.09001 * 109.47274 * 172.27832 * 1 2 3 31 31 H 1.09002 * 109.47222 * 187.17511 * 3 2 1 32 32 H 1.09003 * 109.47090 * 307.17838 * 3 2 1 33 33 H 1.09000 * 109.46869 * 67.17414 * 3 2 1 34 34 H 1.08969 * 109.21434 * 144.56084 * 7 6 4 35 35 H 1.09472 * 108.33506 * 27.38119 * 7 6 4 36 36 H 1.09368 * 108.48125 * 175.03796 * 8 7 6 37 37 H 1.09254 * 108.75187 * 58.18738 * 8 7 6 38 38 H 1.09322 * 110.56866 * 209.92711 * 11 9 8 39 39 H 1.09234 * 110.73389 * 331.78074 * 11 9 8 40 40 H 1.09033 * 110.67075 * 254.01746 * 12 11 9 41 41 H 1.09278 * 110.26403 * 132.51985 * 12 11 9 42 42 H 1.09096 * 109.59529 * 256.65995 * 15 6 4 43 43 H 1.09153 * 109.48186 * 16.39247 * 15 6 4 44 44 H 0.96992 * 120.00134 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.47079 * 299.99747 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7053 -1.7133 1.1193 6 7 1.7332 -0.2306 2.4563 7 6 2.1196 -0.9722 3.6369 8 6 1.0420 -1.9048 4.1453 9 6 -0.2175 -1.2131 4.6134 10 1 -0.9668 -1.9460 4.9371 11 6 0.1486 -0.2548 5.7644 12 6 0.4501 1.0870 5.0705 13 6 -0.0792 0.9378 3.6524 14 1 -0.8236 1.7202 3.4793 15 6 1.0129 1.0699 2.5910 16 7 -0.7442 -0.3739 3.5073 17 6 -1.6613 -0.7365 2.5548 18 1 -1.7937 -1.7781 2.3015 19 6 -2.4197 0.2348 1.9159 20 7 -1.9079 1.4263 1.6902 21 14 -4.1663 -0.1488 1.3765 22 1 -4.5022 -1.5477 1.7447 23 1 -5.1082 0.7800 2.0516 24 1 -4.2776 0.0165 -0.0952 25 6 2.0399 -0.7212 -1.2493 26 9 1.5736 -0.0617 -2.3916 27 9 3.4389 -0.7207 -1.2496 28 1 -0.3633 0.3896 0.9510 29 1 -0.3634 0.6288 -0.8129 30 1 -0.3634 -1.0183 -0.1381 31 1 3.1224 1.4451 -0.1284 32 1 1.5756 1.9921 -0.8188 33 1 1.7852 1.9179 0.9472 34 1 2.3922 -0.2726 4.4266 35 1 3.0066 -1.5666 3.3952 36 1 1.4497 -2.4842 4.9785 37 1 0.7807 -2.6064 3.3496 38 1 -0.6909 -0.1473 6.4565 39 1 1.0273 -0.6158 6.3036 40 1 1.5227 1.2825 5.0604 41 1 -0.0674 1.9023 5.5820 42 1 1.7171 1.8495 2.8850 43 1 0.5613 1.3367 1.6338 44 1 -2.4379 2.1052 1.2441 45 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045843725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:21 Heat of formation + Delta-G solvation = -83.874953 kcal Electronic energy + Delta-G solvation = -30603.820255 eV Core-core repulsion = 26486.752576 eV Total energy + Delta-G solvation = -4117.067679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.54229 -46.48767 -40.25813 -38.15047 -35.21337 -34.08481 -32.94830 -31.81770 -29.69624 -27.39752 -26.98736 -26.06538 -25.41382 -23.98351 -23.09312 -20.87488 -19.72552 -19.43146 -18.25275 -17.32507 -16.81126 -16.67837 -16.01534 -15.73364 -15.11665 -14.89819 -14.63616 -14.35822 -13.98253 -13.73794 -13.47625 -13.14795 -13.04473 -12.85669 -12.55402 -12.40392 -12.22352 -12.05179 -11.80133 -11.54962 -11.51548 -11.37296 -11.24372 -11.16320 -11.05462 -10.80369 -10.75436 -10.57709 -10.34842 -10.14018 -9.97485 -9.83511 -9.54977 -9.38372 -8.98640 -8.19858 -7.90461 -7.02010 -6.21889 -3.28401 3.18890 3.28604 3.41516 3.43828 3.59105 4.26017 4.33937 4.60621 4.77701 4.97551 5.00397 5.19558 5.38157 5.45699 5.51993 5.56536 5.58003 5.65560 5.71067 5.78947 5.92151 6.02313 6.04837 6.10116 6.18280 6.19304 6.27238 6.37184 6.41401 6.50765 6.57467 6.60969 6.66115 6.72582 6.77851 6.95345 7.03241 7.24221 7.41891 7.64504 7.79504 8.03534 8.05553 8.76642 8.94114 9.53745 10.36704 10.93765 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012155 B = 0.007956 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.085049 B = 3518.627723 C = 4918.240899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.126 4.126 3 C -0.162 4.162 4 C 0.537 3.463 5 O -0.562 6.562 6 N -0.574 5.574 7 C 0.129 3.871 8 C -0.145 4.145 9 C 0.156 3.844 10 H 0.061 0.939 11 C -0.126 4.126 12 C -0.127 4.127 13 C 0.141 3.859 14 H 0.101 0.899 15 C 0.077 3.923 16 N -0.580 5.580 17 C -0.228 4.228 18 H 0.078 0.922 19 C 0.020 3.980 20 N -0.887 5.887 21 Si 0.871 3.129 22 H -0.279 1.279 23 H -0.287 1.287 24 H -0.292 1.292 25 C 0.283 3.717 26 F -0.206 7.206 27 F -0.202 7.202 28 H 0.178 0.822 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.131 0.869 44 H 0.262 0.738 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.523 1.218 2.841 6.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.130 4.130 3 C -0.219 4.219 4 C 0.325 3.675 5 O -0.442 6.442 6 N -0.304 5.304 7 C 0.005 3.995 8 C -0.185 4.185 9 C 0.049 3.951 10 H 0.079 0.921 11 C -0.164 4.164 12 C -0.166 4.166 13 C 0.034 3.966 14 H 0.118 0.882 15 C -0.046 4.046 16 N -0.303 5.303 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.177 4.177 20 N -0.532 5.532 21 Si 0.699 3.301 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.219 1.219 25 C 0.229 3.771 26 F -0.187 7.187 27 F -0.183 7.183 28 H 0.195 0.805 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.148 0.852 44 H 0.072 0.928 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.730 0.816 2.612 6.350 hybrid contribution -0.847 -0.206 -0.562 1.037 sum 4.883 0.611 2.050 5.331 Atomic orbital electron populations 1.22938 0.87214 1.02576 1.10657 1.21794 1.01741 0.97516 0.91973 1.22306 1.00985 0.93379 1.05190 1.19932 0.78956 0.84024 0.84617 1.90635 1.40117 1.26705 1.86771 1.47733 1.55852 1.22535 1.04261 1.20466 0.96809 0.94970 0.87243 1.21927 0.97615 0.98789 1.00214 1.21037 0.92773 0.92979 0.88299 0.92135 1.22478 1.00152 0.96192 0.97622 1.22150 0.99765 0.97135 0.97510 1.21337 0.93412 0.92344 0.89512 0.88170 1.23738 0.93528 0.81763 1.05562 1.44882 1.47682 1.08693 1.29024 1.18785 1.08885 0.92842 1.14986 0.90474 1.24916 0.97823 0.95181 0.99819 1.69751 1.34717 1.05907 1.42818 0.86701 0.87731 0.78180 0.77471 1.20436 1.21372 1.21927 1.21642 0.75364 0.97272 0.82837 1.92931 1.88456 1.83994 1.53345 1.92939 1.31059 1.97608 1.96712 0.80493 0.92737 0.93375 0.92451 0.91092 0.88945 0.91729 0.91611 0.92815 0.92632 0.92358 0.92249 0.92507 0.92333 0.94124 0.85163 0.92772 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.59 6.92 37.15 0.26 -3.33 16 2 C -0.13 -2.37 0.46 -155.66 -0.07 -2.44 16 3 C -0.16 -2.70 7.83 37.16 0.29 -2.40 16 4 C 0.54 10.95 6.34 -10.88 -0.07 10.88 16 5 O -0.56 -12.68 14.89 5.55 0.08 -12.60 16 6 N -0.57 -10.85 2.59 -173.57 -0.45 -11.30 16 7 C 0.13 2.24 5.03 -5.87 -0.03 2.21 16 8 C -0.14 -2.50 5.03 -28.53 -0.14 -2.64 16 9 C 0.16 2.82 3.82 -67.16 -0.26 2.57 16 10 H 0.06 1.12 8.20 -51.53 -0.42 0.69 16 11 C -0.13 -1.91 6.03 -25.58 -0.15 -2.06 16 12 C -0.13 -2.01 5.73 -26.65 -0.15 -2.16 16 13 C 0.14 2.69 2.28 -67.76 -0.15 2.54 16 14 H 0.10 2.19 6.17 -51.72 -0.32 1.87 16 15 C 0.08 1.40 3.37 -2.57 -0.01 1.40 16 16 N -0.58 -12.16 2.36 -156.14 -0.37 -12.53 16 17 C -0.23 -5.35 8.51 -14.98 -0.13 -5.47 16 18 H 0.08 1.91 8.01 -52.48 -0.42 1.49 16 19 C 0.02 0.47 4.39 -17.43 -0.08 0.40 16 20 N -0.89 -20.36 8.25 55.49 0.46 -19.90 16 21 Si 0.87 19.35 29.66 -169.99 -5.04 14.31 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.28 5.15 3.78 37.16 0.14 5.29 16 26 F -0.21 -3.66 16.58 2.25 0.04 -3.62 16 27 F -0.20 -3.87 15.82 2.25 0.04 -3.83 16 28 H 0.18 3.77 0.43 -51.93 -0.02 3.75 16 29 H 0.05 1.07 7.98 -51.93 -0.41 0.66 16 30 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.06 0.92 7.61 -51.93 -0.39 0.53 16 32 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 33 H 0.09 1.51 4.14 -51.93 -0.21 1.29 16 34 H 0.06 1.00 5.61 -51.95 -0.29 0.71 16 35 H 0.07 1.18 7.20 -51.66 -0.37 0.81 16 36 H 0.05 0.79 8.14 -51.72 -0.42 0.37 16 37 H 0.05 1.11 8.16 -51.79 -0.42 0.69 16 38 H 0.06 0.86 8.17 -51.75 -0.42 0.44 16 39 H 0.06 0.78 7.79 -51.80 -0.40 0.38 16 40 H 0.06 0.81 6.37 -51.91 -0.33 0.48 16 41 H 0.06 0.87 8.17 -51.77 -0.42 0.45 16 42 H 0.04 0.67 7.59 -51.87 -0.39 0.27 16 43 H 0.13 2.55 2.31 -51.84 -0.12 2.43 16 44 H 0.26 5.97 8.31 -40.82 -0.34 5.63 16 45 H 0.11 1.88 8.08 -51.93 -0.42 1.46 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -25.33 325.49 -7.09 -32.43 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.20 Total: 7.37 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.56 Total: 4.77 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.36 Total: -43.74 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 0.07 Total: -7.45 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.04 Total: 14.31 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -25.33 -7.09 -32.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045843725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.445 kcal (2) G-P(sol) polarization free energy of solvation -25.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds