Wall clock time and date at job start Tue Mar 31 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47342 * 2 1 4 4 C 1.50698 * 109.47291 * 120.00270 * 2 1 3 5 5 O 1.21285 * 119.99836 * 118.39023 * 4 2 1 6 6 N 1.35003 * 119.99868 * 298.39153 * 4 2 1 7 7 C 1.44677 * 119.97541 * 174.83788 * 6 4 2 8 8 C 1.51308 * 113.57015 * 266.81934 * 7 6 4 9 9 C 1.51126 * 114.55263 * 296.39285 * 8 7 6 10 10 H 1.09702 * 110.78053 * 178.15543 * 9 8 7 11 11 C 1.54178 * 108.53495 * 300.17227 * 9 8 7 12 12 C 1.54034 * 104.57108 * 91.00162 * 11 9 8 13 13 C 1.52096 * 105.45568 * 13.61018 * 12 11 9 14 14 H 1.09376 * 108.31996 * 121.45038 * 13 12 11 15 15 C 1.49273 * 119.90164 * 354.38552 * 6 4 2 16 16 N 1.47785 * 109.58502 * 3.55666 * 13 12 11 17 17 C 1.37103 * 127.15768 * 159.64059 * 16 13 12 18 18 H 1.08008 * 120.00067 * 156.33487 * 17 16 13 19 19 C 1.38815 * 120.00613 * 336.33319 * 17 16 13 20 20 N 1.31621 * 119.99712 * 32.80382 * 19 17 16 21 21 Si 1.86788 * 120.00397 * 212.80274 * 19 17 16 22 22 H 1.48501 * 109.47281 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47043 * 120.00015 * 21 19 17 24 24 H 1.48507 * 109.47494 * 239.99896 * 21 19 17 25 25 C 1.53000 * 109.47080 * 240.00263 * 2 1 3 26 26 F 1.39900 * 109.47459 * 59.99792 * 25 2 1 27 27 F 1.39900 * 109.47151 * 179.97438 * 25 2 1 28 28 H 1.09006 * 109.47027 * 292.27653 * 1 2 3 29 29 H 1.09005 * 109.47156 * 52.27535 * 1 2 3 30 30 H 1.09001 * 109.47274 * 172.27832 * 1 2 3 31 31 H 1.09002 * 109.47222 * 187.17511 * 3 2 1 32 32 H 1.09003 * 109.47090 * 307.17838 * 3 2 1 33 33 H 1.09000 * 109.46869 * 67.17414 * 3 2 1 34 34 H 1.08969 * 109.21434 * 144.56084 * 7 6 4 35 35 H 1.09472 * 108.33506 * 27.38119 * 7 6 4 36 36 H 1.09368 * 108.48125 * 175.03796 * 8 7 6 37 37 H 1.09254 * 108.75187 * 58.18738 * 8 7 6 38 38 H 1.09322 * 110.56866 * 209.92711 * 11 9 8 39 39 H 1.09234 * 110.73389 * 331.78074 * 11 9 8 40 40 H 1.09033 * 110.67075 * 254.01746 * 12 11 9 41 41 H 1.09278 * 110.26403 * 132.51985 * 12 11 9 42 42 H 1.09096 * 109.59529 * 256.65995 * 15 6 4 43 43 H 1.09153 * 109.48186 * 16.39247 * 15 6 4 44 44 H 0.96992 * 120.00134 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.47079 * 299.99747 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7053 -1.7133 1.1193 6 7 1.7332 -0.2306 2.4563 7 6 2.1196 -0.9722 3.6369 8 6 1.0420 -1.9048 4.1453 9 6 -0.2175 -1.2131 4.6134 10 1 -0.9668 -1.9460 4.9371 11 6 0.1486 -0.2548 5.7644 12 6 0.4501 1.0870 5.0705 13 6 -0.0792 0.9378 3.6524 14 1 -0.8236 1.7202 3.4793 15 6 1.0129 1.0699 2.5910 16 7 -0.7442 -0.3739 3.5073 17 6 -1.6613 -0.7365 2.5548 18 1 -1.7937 -1.7781 2.3015 19 6 -2.4197 0.2348 1.9159 20 7 -1.9079 1.4263 1.6902 21 14 -4.1663 -0.1488 1.3765 22 1 -4.5022 -1.5477 1.7447 23 1 -5.1082 0.7800 2.0516 24 1 -4.2776 0.0165 -0.0952 25 6 2.0399 -0.7212 -1.2493 26 9 1.5736 -0.0617 -2.3916 27 9 3.4389 -0.7207 -1.2496 28 1 -0.3633 0.3896 0.9510 29 1 -0.3634 0.6288 -0.8129 30 1 -0.3634 -1.0183 -0.1381 31 1 3.1224 1.4451 -0.1284 32 1 1.5756 1.9921 -0.8188 33 1 1.7852 1.9179 0.9472 34 1 2.3922 -0.2726 4.4266 35 1 3.0066 -1.5666 3.3952 36 1 1.4497 -2.4842 4.9785 37 1 0.7807 -2.6064 3.3496 38 1 -0.6909 -0.1473 6.4565 39 1 1.0273 -0.6158 6.3036 40 1 1.5227 1.2825 5.0604 41 1 -0.0674 1.9023 5.5820 42 1 1.7171 1.8495 2.8850 43 1 0.5613 1.3367 1.6338 44 1 -2.4379 2.1052 1.2441 45 1 1.6766 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045843725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:20 Heat of formation + Delta-G solvation = -95.799887 kcal Electronic energy + Delta-G solvation = -30604.337359 eV Core-core repulsion = 26486.752576 eV Total energy + Delta-G solvation = -4117.584783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.02055 -47.96679 -41.75855 -39.64652 -36.75820 -35.64795 -34.54973 -33.26537 -31.27741 -28.82994 -28.41903 -27.56474 -26.94918 -25.60520 -24.57072 -22.27754 -21.17711 -20.95825 -19.72207 -18.88683 -18.30760 -18.18846 -17.55631 -17.25399 -16.67469 -16.48700 -16.12850 -15.89085 -15.58323 -15.21124 -15.00549 -14.65164 -14.48568 -14.33320 -14.04731 -13.86114 -13.74075 -13.57113 -13.30235 -13.08583 -13.02241 -12.89616 -12.73826 -12.61698 -12.55695 -12.41242 -12.25823 -12.15351 -12.00420 -11.66174 -11.50252 -11.35390 -10.95375 -10.84524 -10.52492 -9.94427 -9.40953 -8.67667 -8.01918 -5.05412 1.45743 1.57391 1.60574 1.61155 2.11842 2.54132 2.79186 3.11632 3.18659 3.30474 3.53721 3.73449 3.92571 4.05887 4.12592 4.19853 4.23770 4.26140 4.31365 4.41799 4.55719 4.65807 4.69373 4.74363 4.79684 4.88510 4.90109 4.97951 5.03373 5.10079 5.12686 5.19607 5.25781 5.30716 5.39356 5.55205 5.67737 5.78901 5.82034 5.89591 6.13299 6.37336 6.51759 7.18253 7.23694 7.81342 8.64853 9.12030 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012155 B = 0.007956 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.085049 B = 3518.627723 C = 4918.240899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.157 4.157 4 C 0.528 3.472 5 O -0.590 6.590 6 N -0.571 5.571 7 C 0.124 3.876 8 C -0.135 4.135 9 C 0.147 3.853 10 H 0.049 0.951 11 C -0.115 4.115 12 C -0.122 4.122 13 C 0.141 3.859 14 H 0.072 0.928 15 C 0.076 3.924 16 N -0.596 5.596 17 C -0.230 4.230 18 H 0.053 0.947 19 C 0.001 3.999 20 N -0.884 5.884 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.299 1.299 25 C 0.284 3.716 26 F -0.203 7.203 27 F -0.206 7.206 28 H 0.173 0.827 29 H 0.054 0.946 30 H 0.028 0.972 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.017 0.983 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.117 0.883 44 H 0.259 0.741 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.793 2.277 4.443 8.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.128 4.128 3 C -0.213 4.213 4 C 0.316 3.684 5 O -0.473 6.473 6 N -0.300 5.300 7 C 0.001 3.999 8 C -0.176 4.176 9 C 0.041 3.959 10 H 0.067 0.933 11 C -0.153 4.153 12 C -0.160 4.160 13 C 0.035 3.965 14 H 0.090 0.910 15 C -0.046 4.046 16 N -0.320 5.320 17 C -0.358 4.358 18 H 0.071 0.929 19 C -0.197 4.197 20 N -0.528 5.528 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.227 1.227 25 C 0.230 3.770 26 F -0.184 7.184 27 F -0.187 7.187 28 H 0.190 0.810 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.134 0.866 44 H 0.070 0.930 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.000 1.890 4.241 8.400 hybrid contribution -1.284 -0.576 -1.052 1.757 sum 5.715 1.314 3.190 6.676 Atomic orbital electron populations 1.22829 0.88465 1.01236 1.10319 1.21742 1.00519 0.98868 0.91642 1.22287 1.01354 0.91843 1.05840 1.20210 0.78842 0.83808 0.85504 1.90613 1.41583 1.27838 1.87230 1.47836 1.55061 1.22723 1.04363 1.20630 0.96347 0.95499 0.87384 1.21833 0.97476 0.98246 1.00018 1.21226 0.92621 0.93390 0.88679 0.93282 1.22417 1.01700 0.94839 0.96388 1.22117 1.01128 0.97768 0.95009 1.21316 0.92902 0.90381 0.91928 0.91006 1.23714 0.93984 0.82058 1.04859 1.44996 1.47757 1.10042 1.29172 1.18588 1.09913 0.91739 1.15601 0.92880 1.25091 0.98622 0.95522 1.00432 1.69805 1.34503 1.05696 1.42834 0.86230 0.86752 0.77201 0.76573 1.21412 1.21931 1.22730 1.21620 0.75108 0.97488 0.82787 1.92935 1.88384 1.83949 1.53135 1.92928 1.31400 1.97634 1.96734 0.81016 0.92730 0.95274 0.91755 0.90326 0.88416 0.88725 0.92273 0.89622 0.96444 0.91926 0.89105 0.90224 0.91315 0.91293 0.86558 0.93033 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.99 6.92 71.98 0.50 -6.50 16 2 C -0.12 -4.57 0.46 -52.93 -0.02 -4.59 16 3 C -0.16 -4.96 7.83 71.98 0.56 -4.40 16 4 C 0.53 21.21 6.34 87.62 0.56 21.76 16 5 O -0.59 -26.52 14.89 -3.05 -0.05 -26.57 16 6 N -0.57 -20.66 2.59 -821.30 -2.13 -22.78 16 7 C 0.12 4.01 5.03 86.17 0.43 4.44 16 8 C -0.14 -4.44 5.03 29.43 0.15 -4.29 16 9 C 0.15 5.07 3.82 44.39 0.17 5.24 16 10 H 0.05 1.78 8.20 -2.01 -0.02 1.76 16 11 C -0.11 -3.04 6.03 31.34 0.19 -2.85 16 12 C -0.12 -3.36 5.73 30.65 0.18 -3.19 16 13 C 0.14 5.12 2.28 44.40 0.10 5.23 16 14 H 0.07 3.04 6.17 -2.19 -0.01 3.03 16 15 C 0.08 2.62 3.37 85.79 0.29 2.91 16 16 N -0.60 -24.61 2.36 -647.91 -1.53 -26.15 16 17 C -0.23 -10.95 8.51 84.01 0.71 -10.24 16 18 H 0.05 2.74 8.01 -2.91 -0.02 2.72 16 19 C 0.00 0.04 4.39 84.86 0.37 0.41 16 20 N -0.88 -40.42 8.25 21.65 0.18 -40.24 16 21 Si 0.90 40.23 29.66 68.60 2.03 42.27 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 25 C 0.28 10.23 3.78 71.98 0.27 10.50 16 26 F -0.20 -7.05 16.58 44.97 0.75 -6.30 16 27 F -0.21 -7.72 15.82 44.97 0.71 -7.00 16 28 H 0.17 7.32 0.43 -2.38 0.00 7.32 16 29 H 0.05 2.15 7.98 -2.38 -0.02 2.14 16 30 H 0.03 1.24 8.13 -2.39 -0.02 1.22 16 31 H 0.06 1.94 7.61 -2.39 -0.02 1.92 16 32 H 0.08 2.36 7.97 -2.39 -0.02 2.34 16 33 H 0.10 2.99 4.14 -2.39 -0.01 2.98 16 34 H 0.09 2.49 5.61 -2.40 -0.01 2.47 16 35 H 0.06 2.01 7.20 -2.14 -0.02 1.99 16 36 H 0.09 2.25 8.14 -2.19 -0.02 2.24 16 37 H 0.02 0.68 8.16 -2.25 -0.02 0.66 16 38 H 0.06 1.63 8.17 -2.22 -0.02 1.61 16 39 H 0.09 1.88 7.79 -2.26 -0.02 1.86 16 40 H 0.08 1.85 6.37 -2.37 -0.02 1.84 16 41 H 0.07 1.78 8.17 -2.24 -0.02 1.77 16 42 H 0.07 2.01 7.59 -2.34 -0.02 1.99 16 43 H 0.12 4.40 2.31 -2.31 -0.01 4.40 16 44 H 0.26 11.78 8.31 -92.71 -0.77 11.01 16 45 H 0.11 3.90 8.08 -2.39 -0.02 3.88 16 Total: -1.00 -54.57 325.49 5.46 -49.12 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 1.03 Total: 23.23 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 4.46 Total: 14.43 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -3.48 Total: -89.17 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.05 Total: -26.57 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 1.46 Total: -13.31 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.27 kcal Total: -54.57 5.46 -49.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045843725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.684 kcal (2) G-P(sol) polarization free energy of solvation -54.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds