Wall clock time and date at job start Tue Mar 31 2020 12:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39902 * 109.47499 * 2 1 4 4 F 1.39898 * 109.47295 * 239.99549 * 2 1 3 5 5 C 1.50703 * 109.46900 * 119.99959 * 2 1 3 6 6 O 1.21279 * 119.99737 * 334.99669 * 5 2 1 7 7 N 1.35122 * 120.00269 * 155.00130 * 5 2 1 8 8 C 1.44469 * 118.20537 * 359.97438 * 7 5 2 9 9 C 1.54693 * 109.50232 * 269.29150 * 8 7 5 10 10 C 1.47108 * 110.23733 * 289.74390 * 9 8 7 11 11 C 1.52253 * 114.89286 * 64.54253 * 10 9 8 12 12 C 1.50242 * 111.74473 * 274.43950 * 11 10 9 13 13 C 1.53750 * 112.38065 * 321.58583 * 12 11 10 14 14 C 1.54943 * 103.88919 * 225.95247 * 13 12 11 15 15 N 1.48331 * 102.87788 * 34.97787 * 14 13 12 16 16 C 1.36948 * 127.56615 * 137.17785 * 15 14 13 17 17 H 1.07997 * 120.00297 * 348.21385 * 16 15 14 18 18 C 1.38812 * 119.99706 * 168.21585 * 16 15 14 19 19 N 1.31611 * 120.00297 * 350.30346 * 18 16 15 20 20 Si 1.86802 * 119.99679 * 170.30421 * 18 16 15 21 21 H 1.48501 * 109.47404 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47140 * 120.00110 * 20 18 16 23 23 H 1.48503 * 109.47126 * 239.99652 * 20 18 16 24 24 C 1.47916 * 104.50588 * 317.17732 * 15 14 13 25 25 C 1.47206 * 118.41232 * 179.24279 * 7 5 2 26 26 H 1.08998 * 109.47277 * 300.00386 * 1 2 3 27 27 H 1.09004 * 109.46803 * 60.00254 * 1 2 3 28 28 H 1.08998 * 109.47264 * 179.97438 * 1 2 3 29 29 H 1.09011 * 109.53791 * 149.30878 * 8 7 5 30 30 H 1.08991 * 109.58052 * 29.35820 * 8 7 5 31 31 H 1.08816 * 109.64101 * 50.23733 * 9 8 7 32 32 H 1.09065 * 109.17696 * 169.92304 * 9 8 7 33 33 H 1.09595 * 107.60492 * 184.91153 * 10 9 8 34 34 H 1.08591 * 108.30319 * 300.69395 * 10 9 8 35 35 H 1.09297 * 109.50813 * 35.90303 * 11 10 9 36 36 H 1.09547 * 109.10748 * 153.90054 * 11 10 9 37 37 H 1.08885 * 111.18338 * 343.21709 * 13 12 11 38 38 H 1.08743 * 110.79261 * 107.42701 * 13 12 11 39 39 H 1.08617 * 110.46276 * 153.28821 * 14 13 12 40 40 H 1.08643 * 110.46546 * 276.79237 * 14 13 12 41 41 H 0.97003 * 120.00626 * 180.02562 * 19 18 16 42 42 H 1.09136 * 110.44354 * 274.92496 * 24 15 14 43 43 H 1.09086 * 110.59753 * 152.94557 * 24 15 14 44 44 H 1.09331 * 108.65856 * 12.63518 * 25 7 5 45 45 H 1.09241 * 108.88803 * 255.27100 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2305 6 8 1.3369 -0.7704 2.2223 7 7 3.2573 -1.2805 1.2288 8 6 4.0527 -1.1861 0.0265 9 6 3.7692 -2.4089 -0.8775 10 6 4.3327 -3.6277 -0.2765 11 6 3.7052 -4.0377 1.0488 12 6 4.3468 -3.3328 2.2101 13 6 5.8671 -3.1832 2.0368 14 6 6.4419 -3.6083 3.4114 15 7 5.5136 -4.6830 3.8398 16 6 5.8346 -5.8815 4.4196 17 1 6.8620 -6.2136 4.4399 18 6 4.8392 -6.6694 4.9812 19 7 3.6235 -6.1875 5.1292 20 14 5.2254 -8.4137 5.5268 21 1 6.6539 -8.7133 5.2530 22 1 4.9613 -8.5470 6.9822 23 1 4.3678 -9.3677 4.7788 24 6 4.1691 -4.1685 3.5000 25 6 3.7197 -1.9507 2.4552 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 5.1104 -1.1676 0.2896 30 1 3.7979 -0.2718 -0.5092 31 1 2.6951 -2.5306 -1.0019 32 1 4.2287 -2.2472 -1.8534 33 1 4.1863 -4.4471 -0.9894 34 1 5.4031 -3.4868 -0.1596 35 1 2.6359 -3.8124 1.0315 36 1 3.8209 -5.1190 1.1810 37 1 6.2437 -3.8567 1.2686 38 1 6.1310 -2.1510 1.8188 39 1 7.4514 -3.9927 3.2984 40 1 6.4135 -2.7758 4.1089 41 1 2.9280 -6.7379 5.5219 42 1 3.7892 -3.5348 4.3033 43 1 3.4779 -4.9924 3.3168 44 1 2.8687 -2.0688 3.1314 45 1 4.4571 -1.3141 2.9496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045907323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:35 Heat of formation + Delta-G solvation = -91.383934 kcal Electronic energy + Delta-G solvation = -29159.099690 eV Core-core repulsion = 25041.706397 eV Total energy + Delta-G solvation = -4117.393293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.54145 -47.44084 -40.44879 -38.60706 -36.31036 -33.77551 -32.87349 -31.76011 -31.01697 -28.36631 -27.29686 -26.49968 -24.96205 -24.34638 -22.70093 -21.58307 -20.34485 -19.55221 -18.23549 -17.98497 -17.79221 -17.22250 -16.81832 -15.86998 -15.55483 -15.31773 -14.82535 -14.54161 -14.08992 -14.01367 -13.92121 -13.73887 -13.62316 -13.32355 -13.05139 -12.87270 -12.75952 -12.63928 -12.41547 -12.15302 -11.99320 -11.74134 -11.56526 -11.32275 -10.94956 -10.87279 -10.73929 -10.47406 -10.35262 -10.04714 -9.98049 -9.88462 -9.80751 -9.67819 -9.50451 -8.68379 -8.60300 -6.85568 -5.76696 -3.09280 2.08489 2.54295 3.38412 3.44555 3.46946 3.50085 3.71207 4.15539 4.34433 4.48143 4.79409 4.92864 4.98113 5.15153 5.16107 5.29116 5.31724 5.37834 5.53591 5.56652 5.58489 5.62542 5.74982 5.83878 5.85715 5.96055 6.04973 6.16106 6.18990 6.25991 6.31984 6.40602 6.53463 6.62086 6.68613 6.78533 6.84295 6.99178 7.14338 7.37866 7.54952 7.74218 7.77719 8.21521 9.13975 9.76699 10.52753 11.37358 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023673 B = 0.003865 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.506086 B = 7242.225839 C = 7560.592571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.279 3.721 3 F -0.185 7.185 4 F -0.181 7.181 5 C 0.476 3.524 6 O -0.504 6.504 7 N -0.576 5.576 8 C 0.097 3.903 9 C -0.130 4.130 10 C -0.125 4.125 11 C -0.089 4.089 12 C -0.088 4.088 13 C -0.125 4.125 14 C 0.121 3.879 15 N -0.596 5.596 16 C -0.225 4.225 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.916 5.916 20 Si 0.909 3.091 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.174 3.826 25 C 0.120 3.880 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.022 0.978 41 H 0.253 0.747 42 H 0.020 0.980 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.552 12.548 -14.517 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.239 3.761 3 F -0.166 7.166 4 F -0.162 7.162 5 C 0.258 3.742 6 O -0.379 6.379 7 N -0.307 5.307 8 C -0.026 4.026 9 C -0.168 4.168 10 C -0.163 4.163 11 C -0.126 4.126 12 C -0.091 4.091 13 C -0.164 4.164 14 C -0.005 4.005 15 N -0.320 5.320 16 C -0.353 4.353 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.563 5.563 20 Si 0.739 3.261 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.047 3.953 25 C 0.000 4.000 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.038 0.962 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.937 12.280 -13.849 18.741 hybrid contribution 0.322 -0.783 0.133 0.857 sum -2.615 11.497 -13.716 18.088 Atomic orbital electron populations 1.22620 0.88997 1.06379 1.05917 1.21374 0.95732 0.76066 0.82879 1.93068 1.90528 1.36382 1.96647 1.93056 1.89926 1.80139 1.53118 1.20923 0.83002 0.81335 0.88977 1.90777 1.55636 1.58394 1.33095 1.47772 1.15070 1.52791 1.15037 1.21937 0.96595 0.99109 0.84958 1.21362 1.02384 0.94908 0.98183 1.20491 1.01401 0.97137 0.97237 1.20818 0.98829 1.00615 0.92381 1.21531 0.94856 0.93468 0.99203 1.22788 0.94701 0.99246 0.99633 1.21812 0.94298 0.91609 0.92826 1.44914 1.01303 1.14967 1.70805 1.19049 0.93824 0.92737 1.29672 0.90499 1.24829 0.96235 0.99117 1.00140 1.69909 1.01868 1.35509 1.49009 0.86098 0.77483 0.84528 0.77963 1.20446 1.21769 1.21693 1.21696 0.89000 0.95524 0.89063 1.22308 1.00666 0.93200 0.83866 0.88118 0.89338 0.88755 0.89899 0.90157 0.91037 0.91184 0.93051 0.91357 0.92893 0.91258 0.91375 0.92774 0.93326 0.96014 0.93663 0.96174 0.89698 0.88672 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 8.92 37.16 0.33 -1.32 16 2 C 0.28 3.20 1.80 -27.88 -0.05 3.15 16 3 F -0.19 -2.20 16.71 2.25 0.04 -2.16 16 4 F -0.18 -1.96 11.36 2.25 0.03 -1.93 16 5 C 0.48 6.91 7.10 -10.83 -0.08 6.83 16 6 O -0.50 -8.79 15.30 5.56 0.09 -8.71 16 7 N -0.58 -8.12 2.30 -172.83 -0.40 -8.52 16 8 C 0.10 1.13 4.97 -4.23 -0.02 1.10 16 9 C -0.13 -1.46 4.77 -28.67 -0.14 -1.60 16 10 C -0.13 -1.64 4.81 -29.94 -0.14 -1.78 16 11 C -0.09 -1.47 4.35 -28.49 -0.12 -1.59 16 12 C -0.09 -1.56 0.62 -154.20 -0.10 -1.65 16 13 C -0.12 -2.06 4.64 -25.32 -0.12 -2.18 16 14 C 0.12 2.43 7.29 -2.01 -0.01 2.42 16 15 N -0.60 -14.87 3.36 -168.56 -0.57 -15.44 16 16 C -0.22 -6.18 10.36 -15.05 -0.16 -6.33 16 17 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 18 C -0.01 -0.18 5.42 -17.43 -0.09 -0.27 16 19 N -0.92 -26.84 10.83 55.49 0.60 -26.24 16 20 Si 0.91 21.92 29.56 -169.99 -5.03 16.89 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 C 0.17 4.05 4.82 -2.36 -0.01 4.04 16 25 C 0.12 1.98 4.87 -3.27 -0.02 1.96 16 26 H 0.10 0.94 7.87 -51.93 -0.41 0.53 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.91 6.77 -51.92 -0.35 0.56 16 30 H 0.08 0.85 5.54 -51.93 -0.29 0.56 16 31 H 0.07 0.85 6.41 -52.03 -0.33 0.52 16 32 H 0.07 0.66 8.15 -51.89 -0.42 0.24 16 33 H 0.05 0.64 8.18 -51.59 -0.42 0.22 16 34 H 0.07 0.88 5.41 -52.16 -0.28 0.60 16 35 H 0.05 0.90 7.78 -51.76 -0.40 0.49 16 36 H 0.07 1.31 7.70 -51.62 -0.40 0.91 16 37 H 0.07 1.11 6.28 -51.99 -0.33 0.79 16 38 H 0.05 0.76 6.48 -52.07 -0.34 0.42 16 39 H 0.05 0.94 8.11 -52.14 -0.42 0.51 16 40 H 0.02 0.44 8.11 -52.13 -0.42 0.02 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.02 0.51 7.32 -51.85 -0.38 0.14 16 43 H 0.08 2.25 5.98 -51.88 -0.31 1.94 16 44 H 0.10 1.79 6.17 -51.74 -0.32 1.47 16 45 H 0.07 1.04 7.65 -51.79 -0.40 0.65 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -30.52 337.79 -7.49 -38.01 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.61 Total: 0.23 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -0.73 Total: 2.78 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.36 Total: -50.20 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.06 Total: -4.09 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.52 -7.49 -38.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045907323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.375 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds