Wall clock time and date at job start Tue Mar 31 2020 12:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39902 * 109.47499 * 2 1 4 4 F 1.39898 * 109.47295 * 239.99549 * 2 1 3 5 5 C 1.50703 * 109.46900 * 119.99959 * 2 1 3 6 6 O 1.21279 * 119.99737 * 334.99669 * 5 2 1 7 7 N 1.35122 * 120.00269 * 155.00130 * 5 2 1 8 8 C 1.44469 * 118.20537 * 359.97438 * 7 5 2 9 9 C 1.54693 * 109.50232 * 269.29150 * 8 7 5 10 10 C 1.47108 * 110.23733 * 289.74390 * 9 8 7 11 11 C 1.52253 * 114.89286 * 64.54253 * 10 9 8 12 12 C 1.50242 * 111.74473 * 274.43950 * 11 10 9 13 13 C 1.53750 * 112.38065 * 321.58583 * 12 11 10 14 14 C 1.54943 * 103.88919 * 225.95247 * 13 12 11 15 15 N 1.48331 * 102.87788 * 34.97787 * 14 13 12 16 16 C 1.36948 * 127.56615 * 137.17785 * 15 14 13 17 17 H 1.07997 * 120.00297 * 348.21385 * 16 15 14 18 18 C 1.38812 * 119.99706 * 168.21585 * 16 15 14 19 19 N 1.31611 * 120.00297 * 350.30346 * 18 16 15 20 20 Si 1.86802 * 119.99679 * 170.30421 * 18 16 15 21 21 H 1.48501 * 109.47404 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47140 * 120.00110 * 20 18 16 23 23 H 1.48503 * 109.47126 * 239.99652 * 20 18 16 24 24 C 1.47916 * 104.50588 * 317.17732 * 15 14 13 25 25 C 1.47206 * 118.41232 * 179.24279 * 7 5 2 26 26 H 1.08998 * 109.47277 * 300.00386 * 1 2 3 27 27 H 1.09004 * 109.46803 * 60.00254 * 1 2 3 28 28 H 1.08998 * 109.47264 * 179.97438 * 1 2 3 29 29 H 1.09011 * 109.53791 * 149.30878 * 8 7 5 30 30 H 1.08991 * 109.58052 * 29.35820 * 8 7 5 31 31 H 1.08816 * 109.64101 * 50.23733 * 9 8 7 32 32 H 1.09065 * 109.17696 * 169.92304 * 9 8 7 33 33 H 1.09595 * 107.60492 * 184.91153 * 10 9 8 34 34 H 1.08591 * 108.30319 * 300.69395 * 10 9 8 35 35 H 1.09297 * 109.50813 * 35.90303 * 11 10 9 36 36 H 1.09547 * 109.10748 * 153.90054 * 11 10 9 37 37 H 1.08885 * 111.18338 * 343.21709 * 13 12 11 38 38 H 1.08743 * 110.79261 * 107.42701 * 13 12 11 39 39 H 1.08617 * 110.46276 * 153.28821 * 14 13 12 40 40 H 1.08643 * 110.46546 * 276.79237 * 14 13 12 41 41 H 0.97003 * 120.00626 * 180.02562 * 19 18 16 42 42 H 1.09136 * 110.44354 * 274.92496 * 24 15 14 43 43 H 1.09086 * 110.59753 * 152.94557 * 24 15 14 44 44 H 1.09331 * 108.65856 * 12.63518 * 25 7 5 45 45 H 1.09241 * 108.88803 * 255.27100 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2305 6 8 1.3369 -0.7704 2.2223 7 7 3.2573 -1.2805 1.2288 8 6 4.0527 -1.1861 0.0265 9 6 3.7692 -2.4089 -0.8775 10 6 4.3327 -3.6277 -0.2765 11 6 3.7052 -4.0377 1.0488 12 6 4.3468 -3.3328 2.2101 13 6 5.8671 -3.1832 2.0368 14 6 6.4419 -3.6083 3.4114 15 7 5.5136 -4.6830 3.8398 16 6 5.8346 -5.8815 4.4196 17 1 6.8620 -6.2136 4.4399 18 6 4.8392 -6.6694 4.9812 19 7 3.6235 -6.1875 5.1292 20 14 5.2254 -8.4137 5.5268 21 1 6.6539 -8.7133 5.2530 22 1 4.9613 -8.5470 6.9822 23 1 4.3678 -9.3677 4.7788 24 6 4.1691 -4.1685 3.5000 25 6 3.7197 -1.9507 2.4552 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 5.1104 -1.1676 0.2896 30 1 3.7979 -0.2718 -0.5092 31 1 2.6951 -2.5306 -1.0019 32 1 4.2287 -2.2472 -1.8534 33 1 4.1863 -4.4471 -0.9894 34 1 5.4031 -3.4868 -0.1596 35 1 2.6359 -3.8124 1.0315 36 1 3.8209 -5.1190 1.1810 37 1 6.2437 -3.8567 1.2686 38 1 6.1310 -2.1510 1.8188 39 1 7.4514 -3.9927 3.2984 40 1 6.4135 -2.7758 4.1089 41 1 2.9280 -6.7379 5.5219 42 1 3.7892 -3.5348 4.3033 43 1 3.4779 -4.9924 3.3168 44 1 2.8687 -2.0688 3.1314 45 1 4.4571 -1.3141 2.9496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045907323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:35 Heat of formation + Delta-G solvation = -108.995725 kcal Electronic energy + Delta-G solvation = -29159.863394 eV Core-core repulsion = 25041.706397 eV Total energy + Delta-G solvation = -4118.156997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.44541 -48.33802 -41.70204 -39.98772 -37.69736 -35.12584 -34.50920 -32.86035 -32.47257 -30.08235 -28.54599 -27.97433 -26.48148 -25.58548 -24.05444 -22.86235 -22.01738 -20.58912 -19.51286 -19.10415 -18.89890 -18.74455 -18.25104 -16.95279 -16.90632 -16.60184 -16.40726 -15.81544 -15.60636 -15.36232 -15.09741 -14.78822 -14.74471 -14.54844 -14.40226 -14.06526 -13.89358 -13.68883 -13.51494 -13.39861 -13.31080 -13.11217 -12.94552 -12.81727 -12.66929 -12.58822 -12.14033 -12.01847 -11.83913 -11.69230 -11.60088 -11.35326 -11.23060 -11.03661 -10.91212 -10.72045 -9.82371 -8.89906 -7.89592 -5.23804 0.95381 1.43456 1.45257 1.46097 1.56210 2.47851 2.51675 2.80434 3.28063 3.30261 3.47082 3.55253 3.70834 3.83273 3.85178 4.02628 4.11182 4.20238 4.32824 4.43072 4.50942 4.55720 4.58603 4.64152 4.65261 4.77453 4.81032 4.90679 4.95017 4.99310 5.09737 5.14479 5.18329 5.26526 5.33179 5.39258 5.44512 5.50607 5.58789 5.65374 5.74496 6.03322 6.18699 6.64597 7.03102 7.71668 8.48439 9.23977 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023673 B = 0.003865 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.506086 B = 7242.225839 C = 7560.592571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.290 3.710 3 F -0.184 7.184 4 F -0.173 7.173 5 C 0.466 3.534 6 O -0.543 6.543 7 N -0.574 5.574 8 C 0.090 3.910 9 C -0.126 4.126 10 C -0.118 4.118 11 C -0.082 4.082 12 C -0.072 4.072 13 C -0.107 4.107 14 C 0.114 3.886 15 N -0.621 5.621 16 C -0.233 4.233 17 H 0.084 0.916 18 C -0.066 4.066 19 N -0.952 5.952 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.295 1.295 23 H -0.293 1.293 24 C 0.181 3.819 25 C 0.131 3.869 26 H 0.095 0.905 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.023 0.977 41 H 0.246 0.754 42 H -0.015 1.015 43 H 0.044 0.956 44 H 0.061 0.939 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 13.789 -17.379 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.251 3.749 3 F -0.165 7.165 4 F -0.154 7.154 5 C 0.250 3.750 6 O -0.420 6.420 7 N -0.304 5.304 8 C -0.032 4.032 9 C -0.164 4.164 10 C -0.155 4.155 11 C -0.120 4.120 12 C -0.074 4.074 13 C -0.145 4.145 14 C -0.011 4.011 15 N -0.345 5.345 16 C -0.362 4.362 17 H 0.102 0.898 18 C -0.259 4.259 19 N -0.600 5.600 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.222 1.222 23 H -0.220 1.220 24 C 0.054 3.946 25 C 0.009 3.991 26 H 0.114 0.886 27 H 0.136 0.864 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.003 0.997 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.316 13.548 -16.758 21.589 hybrid contribution -0.145 -1.143 1.063 1.568 sum -1.461 12.405 -15.695 20.059 Atomic orbital electron populations 1.22682 0.87122 1.06854 1.07132 1.21187 0.96741 0.75530 0.81467 1.93076 1.90664 1.36225 1.96570 1.93071 1.89975 1.80012 1.52341 1.21593 0.82628 0.81063 0.89713 1.90763 1.56629 1.59776 1.34849 1.47821 1.15453 1.52074 1.15092 1.22229 0.97040 1.00071 0.83820 1.21354 1.02183 0.93522 0.99341 1.20406 1.01651 0.98572 0.94873 1.20734 0.98475 0.98460 0.94336 1.21292 0.96504 0.93203 0.96428 1.22705 0.92626 1.01648 0.97536 1.22050 0.94201 0.90294 0.94586 1.45232 1.02815 1.15635 1.70823 1.19463 0.94108 0.93825 1.28823 0.89820 1.25659 0.96168 1.02963 1.01075 1.70131 1.02789 1.36674 1.50439 0.85063 0.77959 0.79753 0.76895 1.18615 1.22179 1.22008 1.21469 0.87938 0.94257 0.90902 1.21933 0.99466 0.92841 0.84860 0.88631 0.86407 0.88714 0.88348 0.88459 0.91713 0.87926 0.92117 0.90239 0.94151 0.94503 0.90339 0.88988 0.92221 0.95858 0.94449 0.99670 0.93791 0.92016 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 8.92 71.98 0.64 -2.31 16 2 C 0.29 6.03 1.80 29.85 0.05 6.08 16 3 F -0.18 -3.88 16.71 44.97 0.75 -3.13 16 4 F -0.17 -3.16 11.36 44.97 0.51 -2.65 16 5 C 0.47 13.22 7.10 87.60 0.62 13.84 16 6 O -0.54 -19.45 15.30 -3.03 -0.05 -19.49 16 7 N -0.57 -15.38 2.30 -818.91 -1.88 -17.27 16 8 C 0.09 1.75 4.97 87.34 0.43 2.18 16 9 C -0.13 -2.35 4.77 29.34 0.14 -2.21 16 10 C -0.12 -2.75 4.81 28.52 0.14 -2.61 16 11 C -0.08 -2.73 4.35 29.46 0.13 -2.60 16 12 C -0.07 -2.55 0.62 -51.98 -0.03 -2.59 16 13 C -0.11 -3.27 4.64 31.51 0.15 -3.12 16 14 C 0.11 4.45 7.29 86.69 0.63 5.09 16 15 N -0.62 -31.73 3.36 -687.20 -2.31 -34.04 16 16 C -0.23 -13.07 10.36 84.03 0.87 -12.20 16 17 H 0.08 4.46 7.85 -2.91 -0.02 4.43 16 18 C -0.07 -3.77 5.42 84.86 0.46 -3.31 16 19 N -0.95 -58.76 10.83 21.65 0.23 -58.53 16 20 Si 0.97 46.15 29.56 68.60 2.03 48.18 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 C 0.18 8.94 4.82 86.69 0.42 9.36 16 25 C 0.13 4.32 4.87 86.49 0.42 4.74 16 26 H 0.09 1.69 7.87 -2.39 -0.02 1.67 16 27 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 1.65 6.77 -2.38 -0.02 1.64 16 30 H 0.10 1.63 5.54 -2.39 -0.01 1.62 16 31 H 0.06 1.34 6.41 -2.48 -0.02 1.32 16 32 H 0.10 1.37 8.15 -2.35 -0.02 1.35 16 33 H 0.06 1.34 8.18 -2.07 -0.02 1.32 16 34 H 0.08 1.71 5.41 -2.60 -0.01 1.70 16 35 H 0.04 1.41 7.78 -2.23 -0.02 1.39 16 36 H 0.04 1.44 7.70 -2.10 -0.02 1.43 16 37 H 0.08 2.30 6.28 -2.45 -0.02 2.28 16 38 H 0.09 2.18 6.48 -2.52 -0.02 2.16 16 39 H 0.06 2.19 8.11 -2.59 -0.02 2.17 16 40 H 0.02 0.92 8.11 -2.58 -0.02 0.89 16 41 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 42 H -0.01 -0.80 7.32 -2.31 -0.02 -0.82 16 43 H 0.04 2.51 5.98 -2.34 -0.01 2.49 16 44 H 0.06 2.47 6.17 -2.21 -0.01 2.46 16 45 H 0.08 2.33 7.65 -2.26 -0.02 2.32 16 Total: -1.00 -70.62 337.79 5.36 -65.26 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.01 Total: 11.32 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.07 Total: 10.35 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -3.96 Total: -109.84 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 1.26 Total: -5.78 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -70.62 5.36 -65.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045907323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.733 kcal (2) G-P(sol) polarization free energy of solvation -70.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds