Wall clock time and date at job start Tue Mar 31 2020 12:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 F 1.39894 * 109.47578 * 2 1 4 4 F 1.39902 * 109.47279 * 239.99664 * 2 1 3 5 5 C 1.50701 * 109.47096 * 120.00208 * 2 1 3 6 6 O 1.21287 * 119.99507 * 343.70034 * 5 2 1 7 7 N 1.34770 * 120.00506 * 163.70494 * 5 2 1 8 8 C 1.47516 * 118.66286 * 355.69045 * 7 5 2 9 9 C 1.53973 * 112.18866 * 137.91721 * 8 7 5 10 10 C 1.50840 * 110.28752 * 319.30463 * 9 8 7 11 11 C 1.52750 * 109.41071 * 91.76921 * 10 9 8 12 12 C 1.46921 * 114.09640 * 275.55672 * 11 10 9 13 13 C 1.55167 * 112.57025 * 184.14849 * 12 11 10 14 14 C 1.54951 * 101.64889 * 157.16694 * 13 12 11 15 15 N 1.47452 * 104.85442 * 323.34436 * 14 13 12 16 16 C 1.36937 * 125.65194 * 204.05081 * 15 14 13 17 17 H 1.07999 * 120.00196 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00069 * 0.02635 * 16 15 14 19 19 N 1.31621 * 120.00332 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00132 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46903 * 59.99868 * 20 18 16 22 22 H 1.48496 * 109.47328 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46853 * 299.99881 * 20 18 16 24 24 C 1.47091 * 108.69369 * 24.07270 * 15 14 13 25 25 C 1.44677 * 118.67033 * 175.69329 * 7 5 2 26 26 H 1.09007 * 109.47233 * 300.00741 * 1 2 3 27 27 H 1.09001 * 109.46899 * 59.99835 * 1 2 3 28 28 H 1.09000 * 109.47766 * 180.02562 * 1 2 3 29 29 H 1.08999 * 108.93489 * 17.21926 * 8 7 5 30 30 H 1.09001 * 108.93801 * 258.61487 * 8 7 5 31 31 H 1.09000 * 109.33123 * 199.05481 * 9 8 7 32 32 H 1.08999 * 109.33568 * 79.55671 * 9 8 7 33 33 H 1.09007 * 109.48003 * 331.79055 * 10 9 8 34 34 H 1.08995 * 109.49623 * 211.75915 * 10 9 8 35 35 H 1.08998 * 108.55680 * 154.36235 * 11 10 9 36 36 H 1.08994 * 108.55335 * 36.75059 * 11 10 9 37 37 H 1.09000 * 110.88493 * 39.10046 * 13 12 11 38 38 H 1.09008 * 111.04482 * 275.30124 * 13 12 11 39 39 H 1.09006 * 110.36458 * 204.50147 * 14 13 12 40 40 H 1.09000 * 110.36276 * 82.18686 * 14 13 12 41 41 H 0.97000 * 120.00336 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.89414 * 118.16827 * 24 15 14 43 43 H 1.08995 * 109.89672 * 239.21067 * 24 15 14 44 44 H 1.09002 * 109.49795 * 150.56347 * 25 7 5 45 45 H 1.09010 * 109.49050 * 30.48209 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0322 -0.7105 1.2304 6 8 1.2838 -0.9090 2.1640 7 7 3.3130 -1.1251 1.2936 8 6 4.1713 -0.9548 0.1060 9 6 5.5829 -0.4625 0.4744 10 6 5.5056 0.5849 1.5570 11 6 5.6211 -0.0879 2.9235 12 6 4.3503 -0.6096 3.4445 13 6 4.4880 -1.1928 4.8758 14 6 3.0302 -1.1009 5.3928 15 7 2.5056 0.1540 4.8233 16 6 1.4724 0.8924 5.3356 17 1 1.1614 1.8012 4.8419 18 6 0.8248 0.4729 6.4895 19 7 1.2035 -0.6349 7.0910 20 14 -0.5850 1.4799 7.1880 21 1 -1.6721 1.5746 6.1807 22 1 -1.1023 0.8228 8.4151 23 1 -0.1009 2.8430 7.5236 24 6 3.2757 0.4808 3.6135 25 6 3.7905 -1.7191 2.5234 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.7079 -0.2309 -0.5644 30 1 4.2537 -1.9109 -0.4109 31 1 6.0577 -0.0345 -0.4086 32 1 6.1777 -1.3044 0.8286 33 1 4.5518 1.1083 1.4890 34 1 6.3209 1.2975 1.4327 35 1 6.0162 0.6372 3.6349 36 1 6.3288 -0.9131 2.8450 37 1 5.1568 -0.5816 5.4818 38 1 4.8274 -2.2283 4.8456 39 1 3.0159 -1.0583 6.4819 40 1 2.4476 -1.9511 5.0379 41 1 0.7512 -0.9278 7.8976 42 1 2.6166 0.4896 2.7453 43 1 3.7508 1.4551 3.7281 44 1 4.5789 -2.4374 2.2983 45 1 2.9671 -2.2276 3.0253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045907324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:39 Heat of formation + Delta-G solvation = -84.434889 kcal Electronic energy + Delta-G solvation = -30059.062706 eV Core-core repulsion = 25941.970746 eV Total energy + Delta-G solvation = -4117.091959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.36158 -47.22077 -40.69087 -38.13447 -36.24085 -33.73266 -32.85042 -31.47326 -30.45143 -28.79548 -27.14799 -26.12279 -25.04951 -24.06962 -22.73839 -21.01463 -20.07477 -19.75537 -18.33063 -17.90123 -17.84285 -16.82133 -16.68220 -15.74870 -15.58313 -15.03360 -14.57520 -14.32960 -14.24806 -14.10434 -13.61538 -13.53067 -13.36251 -13.28377 -13.06205 -12.65482 -12.52501 -12.46573 -12.20080 -11.95186 -11.90499 -11.64785 -11.45780 -11.15037 -10.98242 -10.84003 -10.75371 -10.67152 -10.35436 -10.04225 -9.94462 -9.77383 -9.62721 -9.53385 -9.36686 -8.47437 -8.39430 -6.59955 -5.47813 -2.85669 2.40965 2.76809 3.50186 3.53678 3.55302 3.62961 3.90795 4.33288 4.57855 4.62902 4.64409 4.89535 5.03566 5.12549 5.15480 5.33933 5.40869 5.54105 5.56211 5.61933 5.64993 5.66053 5.79452 5.89073 5.91895 5.93471 6.06207 6.10828 6.19849 6.30347 6.34984 6.47594 6.49100 6.63139 6.75374 6.80599 6.92722 7.06214 7.30649 7.68039 7.78383 8.00584 8.09575 8.53356 9.40501 10.02164 10.68619 11.56774 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.006107 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.836521 B = 4583.729725 C = 5803.847126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.277 3.723 3 F -0.183 7.183 4 F -0.191 7.191 5 C 0.473 3.527 6 O -0.455 6.455 7 N -0.589 5.589 8 C 0.093 3.907 9 C -0.129 4.129 10 C -0.118 4.118 11 C -0.095 4.095 12 C -0.087 4.087 13 C -0.134 4.134 14 C 0.157 3.843 15 N -0.591 5.591 16 C -0.204 4.204 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.926 5.926 20 Si 0.910 3.090 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.288 1.288 24 C 0.148 3.852 25 C 0.128 3.872 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.011 0.989 41 H 0.249 0.751 42 H 0.029 0.971 43 H 0.011 0.989 44 H 0.070 0.930 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.950 -1.913 -16.694 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.238 3.762 3 F -0.164 7.164 4 F -0.172 7.172 5 C 0.254 3.746 6 O -0.325 6.325 7 N -0.322 5.322 8 C -0.029 4.029 9 C -0.167 4.167 10 C -0.156 4.156 11 C -0.133 4.133 12 C -0.089 4.089 13 C -0.173 4.173 14 C 0.032 3.968 15 N -0.316 5.316 16 C -0.332 4.332 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.576 5.576 20 Si 0.741 3.259 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.022 3.978 25 C 0.006 3.994 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.121 0.879 40 H 0.029 0.971 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.029 0.971 44 H 0.089 0.911 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.412 -2.037 -16.021 17.770 hybrid contribution -0.533 0.608 0.059 0.811 sum 6.879 -1.428 -15.962 17.440 Atomic orbital electron populations 1.22598 0.88954 1.06280 1.06002 1.21543 0.95876 0.76239 0.82573 1.93072 1.90453 1.36311 1.96566 1.92966 1.89898 1.80910 1.53468 1.20616 0.83851 0.81725 0.88395 1.91024 1.54543 1.51766 1.35176 1.47677 1.09724 1.60223 1.14578 1.22401 0.91872 1.01996 0.86656 1.21755 0.95732 0.99487 0.99694 1.21099 1.02495 0.97660 0.94357 1.20312 0.96832 0.99836 0.96296 1.20993 0.95381 0.96761 0.95754 1.23104 1.01625 0.98739 0.93800 1.21888 0.86227 0.87459 1.01239 1.44297 1.37113 1.24991 1.25211 1.18943 1.06490 1.02810 1.05000 0.91125 1.24687 0.99950 0.97782 0.98503 1.69777 1.43319 1.23355 1.21112 0.86210 0.82336 0.79099 0.78233 1.21446 1.21731 1.21460 1.21378 0.91491 0.93677 0.91275 1.21697 0.99891 0.94702 0.83112 0.87757 0.89617 0.88866 0.89271 0.91470 0.90820 0.91463 0.91300 0.92015 0.92206 0.92528 0.92077 0.92498 0.87891 0.97146 0.94027 0.95390 0.97148 0.91140 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.81 37.15 0.33 -1.92 16 2 C 0.28 3.95 1.77 -27.89 -0.05 3.90 16 3 F -0.18 -2.75 16.57 2.25 0.04 -2.72 16 4 F -0.19 -2.39 14.07 2.25 0.03 -2.36 16 5 C 0.47 8.13 5.06 -10.99 -0.06 8.07 16 6 O -0.45 -9.84 13.85 5.55 0.08 -9.76 16 7 N -0.59 -8.89 2.04 -172.62 -0.35 -9.24 16 8 C 0.09 1.07 5.21 -2.98 -0.02 1.06 16 9 C -0.13 -1.30 5.69 -27.31 -0.16 -1.46 16 10 C -0.12 -1.48 5.46 -27.94 -0.15 -1.63 16 11 C -0.10 -1.34 4.03 -29.77 -0.12 -1.46 16 12 C -0.09 -1.53 0.59 -154.85 -0.09 -1.62 16 13 C -0.13 -2.57 5.97 -24.55 -0.15 -2.71 16 14 C 0.16 3.93 5.47 -2.49 -0.01 3.92 16 15 N -0.59 -15.80 3.40 -170.15 -0.58 -16.38 16 16 C -0.20 -5.99 10.28 -15.06 -0.15 -6.14 16 17 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.43 5.49 -17.43 -0.10 -0.53 16 19 N -0.93 -28.06 10.09 55.49 0.56 -27.50 16 20 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 C 0.15 3.28 4.73 -3.19 -0.02 3.27 16 25 C 0.13 2.09 4.34 -4.13 -0.02 2.07 16 26 H 0.10 1.47 7.93 -51.93 -0.41 1.06 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.04 4.66 -51.93 -0.24 0.80 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.63 7.33 -51.93 -0.38 0.25 16 33 H 0.07 1.03 6.57 -51.93 -0.34 0.69 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 36 H 0.06 0.70 7.40 -51.93 -0.38 0.31 16 37 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 38 H 0.06 0.95 8.01 -51.92 -0.42 0.53 16 39 H 0.10 2.91 5.88 -51.93 -0.31 2.61 16 40 H 0.01 0.29 7.32 -51.93 -0.38 -0.09 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.03 0.65 3.67 -51.93 -0.19 0.45 16 43 H 0.01 0.25 7.92 -51.93 -0.41 -0.17 16 44 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 45 H 0.09 1.86 5.95 -51.92 -0.31 1.55 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -32.84 337.54 -7.61 -40.45 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.69 Total: -0.59 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.76 Total: 4.81 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.37 Total: -53.11 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.07 Total: -5.07 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.84 -7.61 -40.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045907324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.988 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds