Wall clock time and date at job start Tue Mar 31 2020 12:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 F 1.39894 * 109.47578 * 2 1 4 4 F 1.39902 * 109.47279 * 239.99664 * 2 1 3 5 5 C 1.50701 * 109.47096 * 120.00208 * 2 1 3 6 6 O 1.21287 * 119.99507 * 343.70034 * 5 2 1 7 7 N 1.34770 * 120.00506 * 163.70494 * 5 2 1 8 8 C 1.47516 * 118.66286 * 355.69045 * 7 5 2 9 9 C 1.53973 * 112.18866 * 137.91721 * 8 7 5 10 10 C 1.50840 * 110.28752 * 319.30463 * 9 8 7 11 11 C 1.52750 * 109.41071 * 91.76921 * 10 9 8 12 12 C 1.46921 * 114.09640 * 275.55672 * 11 10 9 13 13 C 1.55167 * 112.57025 * 184.14849 * 12 11 10 14 14 C 1.54951 * 101.64889 * 157.16694 * 13 12 11 15 15 N 1.47452 * 104.85442 * 323.34436 * 14 13 12 16 16 C 1.36937 * 125.65194 * 204.05081 * 15 14 13 17 17 H 1.07999 * 120.00196 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00069 * 0.02635 * 16 15 14 19 19 N 1.31621 * 120.00332 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00132 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46903 * 59.99868 * 20 18 16 22 22 H 1.48496 * 109.47328 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46853 * 299.99881 * 20 18 16 24 24 C 1.47091 * 108.69369 * 24.07270 * 15 14 13 25 25 C 1.44677 * 118.67033 * 175.69329 * 7 5 2 26 26 H 1.09007 * 109.47233 * 300.00741 * 1 2 3 27 27 H 1.09001 * 109.46899 * 59.99835 * 1 2 3 28 28 H 1.09000 * 109.47766 * 180.02562 * 1 2 3 29 29 H 1.08999 * 108.93489 * 17.21926 * 8 7 5 30 30 H 1.09001 * 108.93801 * 258.61487 * 8 7 5 31 31 H 1.09000 * 109.33123 * 199.05481 * 9 8 7 32 32 H 1.08999 * 109.33568 * 79.55671 * 9 8 7 33 33 H 1.09007 * 109.48003 * 331.79055 * 10 9 8 34 34 H 1.08995 * 109.49623 * 211.75915 * 10 9 8 35 35 H 1.08998 * 108.55680 * 154.36235 * 11 10 9 36 36 H 1.08994 * 108.55335 * 36.75059 * 11 10 9 37 37 H 1.09000 * 110.88493 * 39.10046 * 13 12 11 38 38 H 1.09008 * 111.04482 * 275.30124 * 13 12 11 39 39 H 1.09006 * 110.36458 * 204.50147 * 14 13 12 40 40 H 1.09000 * 110.36276 * 82.18686 * 14 13 12 41 41 H 0.97000 * 120.00336 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.89414 * 118.16827 * 24 15 14 43 43 H 1.08995 * 109.89672 * 239.21067 * 24 15 14 44 44 H 1.09002 * 109.49795 * 150.56347 * 25 7 5 45 45 H 1.09010 * 109.49050 * 30.48209 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0322 -0.7105 1.2304 6 8 1.2838 -0.9090 2.1640 7 7 3.3130 -1.1251 1.2936 8 6 4.1713 -0.9548 0.1060 9 6 5.5829 -0.4625 0.4744 10 6 5.5056 0.5849 1.5570 11 6 5.6211 -0.0879 2.9235 12 6 4.3503 -0.6096 3.4445 13 6 4.4880 -1.1928 4.8758 14 6 3.0302 -1.1009 5.3928 15 7 2.5056 0.1540 4.8233 16 6 1.4724 0.8924 5.3356 17 1 1.1614 1.8012 4.8419 18 6 0.8248 0.4729 6.4895 19 7 1.2035 -0.6349 7.0910 20 14 -0.5850 1.4799 7.1880 21 1 -1.6721 1.5746 6.1807 22 1 -1.1023 0.8228 8.4151 23 1 -0.1009 2.8430 7.5236 24 6 3.2757 0.4808 3.6135 25 6 3.7905 -1.7191 2.5234 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.7079 -0.2309 -0.5644 30 1 4.2537 -1.9109 -0.4109 31 1 6.0577 -0.0345 -0.4086 32 1 6.1777 -1.3044 0.8286 33 1 4.5518 1.1083 1.4890 34 1 6.3209 1.2975 1.4327 35 1 6.0162 0.6372 3.6349 36 1 6.3288 -0.9131 2.8450 37 1 5.1568 -0.5816 5.4818 38 1 4.8274 -2.2283 4.8456 39 1 3.0159 -1.0583 6.4819 40 1 2.4476 -1.9511 5.0379 41 1 0.7512 -0.9278 7.8976 42 1 2.6166 0.4896 2.7453 43 1 3.7508 1.4551 3.7281 44 1 4.5789 -2.4374 2.2983 45 1 2.9671 -2.2276 3.0253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045907324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:38 Heat of formation + Delta-G solvation = -104.678481 kcal Electronic energy + Delta-G solvation = -30059.940534 eV Core-core repulsion = 25941.970746 eV Total energy + Delta-G solvation = -4117.969787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.49449 -48.35442 -42.03603 -39.59846 -37.70241 -35.21333 -34.38842 -32.63290 -32.25844 -30.49075 -28.39187 -27.76985 -26.69315 -25.27503 -24.28638 -22.32496 -21.77299 -20.94003 -19.75019 -19.14082 -19.04580 -18.77439 -17.88216 -17.14848 -16.97525 -16.66904 -16.17633 -15.79627 -15.38691 -15.25921 -15.11619 -14.89006 -14.66053 -14.50098 -14.31273 -14.08812 -13.91134 -13.59313 -13.49247 -13.36851 -13.30116 -13.13140 -12.93366 -12.80944 -12.71643 -12.45217 -12.31283 -12.03959 -11.96966 -11.69933 -11.54142 -11.26146 -11.21243 -11.12084 -10.87070 -10.68097 -9.68302 -8.77181 -7.73017 -5.13394 1.09010 1.40533 1.45134 1.51089 1.56622 2.47547 2.50789 2.78201 3.24998 3.34426 3.45173 3.57224 3.74101 3.84813 3.94200 3.98288 4.10160 4.29057 4.34987 4.44289 4.50143 4.51730 4.55796 4.69161 4.70751 4.74825 4.85631 4.89923 4.93944 5.00655 5.07394 5.18079 5.23443 5.26582 5.33924 5.39758 5.46185 5.57447 5.59438 5.70499 5.86362 6.07579 6.35666 6.82302 7.16496 7.85855 8.50536 9.28895 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.006107 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.836521 B = 4583.729725 C = 5803.847126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.286 3.714 3 F -0.188 7.188 4 F -0.176 7.176 5 C 0.462 3.538 6 O -0.514 6.514 7 N -0.582 5.582 8 C 0.085 3.915 9 C -0.122 4.122 10 C -0.116 4.116 11 C -0.095 4.095 12 C -0.071 4.071 13 C -0.120 4.120 14 C 0.162 3.838 15 N -0.610 5.610 16 C -0.224 4.224 17 H 0.064 0.936 18 C -0.069 4.069 19 N -0.949 5.949 20 Si 0.974 3.026 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.277 1.277 24 C 0.144 3.856 25 C 0.132 3.868 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.067 0.933 40 H -0.022 1.022 41 H 0.244 0.756 42 H 0.024 0.976 43 H -0.003 1.003 44 H 0.113 0.887 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.193 -2.097 -19.170 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.247 3.753 3 F -0.169 7.169 4 F -0.157 7.157 5 C 0.245 3.755 6 O -0.389 6.389 7 N -0.314 5.314 8 C -0.036 4.036 9 C -0.159 4.159 10 C -0.154 4.154 11 C -0.132 4.132 12 C -0.073 4.073 13 C -0.159 4.159 14 C 0.037 3.963 15 N -0.335 5.335 16 C -0.354 4.354 17 H 0.082 0.918 18 C -0.261 4.261 19 N -0.600 5.600 20 Si 0.803 3.197 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.203 1.203 24 C 0.019 3.981 25 C 0.009 3.991 26 H 0.099 0.901 27 H 0.136 0.864 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.085 0.915 40 H -0.004 1.004 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.015 0.985 44 H 0.131 0.869 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.712 -2.208 -18.553 21.058 hybrid contribution -1.223 0.671 0.779 1.598 sum 8.489 -1.538 -17.774 19.757 Atomic orbital electron populations 1.22617 0.87770 1.06868 1.06373 1.21310 0.96560 0.75655 0.81809 1.93064 1.90620 1.36650 1.96562 1.92994 1.89834 1.80568 1.52320 1.21204 0.84252 0.81327 0.88701 1.91002 1.56196 1.54205 1.37451 1.47839 1.09567 1.58791 1.15197 1.22738 0.92244 1.03500 0.85100 1.21769 0.94758 0.99404 1.00010 1.21081 1.01613 0.98538 0.94157 1.20326 0.94932 1.00911 0.97053 1.20944 0.95679 0.95399 0.95260 1.22950 0.97180 1.01059 0.94661 1.21628 0.89726 0.85903 0.99059 1.44564 1.36977 1.25126 1.26841 1.19227 1.07693 1.03083 1.05364 0.91836 1.25515 1.02558 0.99101 0.98942 1.70049 1.44151 1.24633 1.21129 0.85207 0.79211 0.77995 0.77287 1.21117 1.21487 1.20263 1.21543 0.92332 0.94831 0.89376 1.21588 0.99543 0.94693 0.83275 0.90089 0.86421 0.88276 0.89459 0.88899 0.87955 0.89461 0.94462 0.89975 0.93051 0.89066 0.91783 0.89176 0.91505 1.00395 0.94586 0.95843 0.98544 0.86860 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.41 8.81 71.98 0.63 -3.78 16 2 C 0.29 7.96 1.77 29.85 0.05 8.01 16 3 F -0.19 -5.55 16.57 44.97 0.75 -4.81 16 4 F -0.18 -4.00 14.07 44.97 0.63 -3.37 16 5 C 0.46 16.07 5.06 87.66 0.44 16.51 16 6 O -0.51 -23.47 13.85 -3.05 -0.04 -23.51 16 7 N -0.58 -16.74 2.04 -818.45 -1.67 -18.41 16 8 C 0.08 1.64 5.21 86.51 0.45 2.09 16 9 C -0.12 -1.84 5.69 30.22 0.17 -1.67 16 10 C -0.12 -2.50 5.46 29.81 0.16 -2.33 16 11 C -0.09 -2.37 4.03 28.62 0.12 -2.26 16 12 C -0.07 -2.43 0.59 -52.40 -0.03 -2.46 16 13 C -0.12 -4.54 5.97 32.00 0.19 -4.35 16 14 C 0.16 8.54 5.47 86.86 0.47 9.01 16 15 N -0.61 -34.27 3.40 -692.24 -2.35 -36.63 16 16 C -0.22 -13.84 10.28 84.03 0.86 -12.97 16 17 H 0.06 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.07 -4.25 5.49 84.86 0.47 -3.78 16 19 N -0.95 -60.24 10.09 21.65 0.22 -60.02 16 20 Si 0.97 49.34 29.55 68.60 2.03 51.36 16 21 H -0.28 -14.16 7.11 99.48 0.71 -13.46 16 22 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 24 C 0.14 6.62 4.73 86.61 0.41 7.03 16 25 C 0.13 4.10 4.34 87.30 0.38 4.48 16 26 H 0.08 2.40 7.93 -2.38 -0.02 2.38 16 27 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 29 H 0.09 1.76 4.66 -2.39 -0.01 1.74 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.05 7.33 -2.39 -0.02 1.04 16 33 H 0.04 1.05 6.57 -2.38 -0.02 1.03 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.39 8.12 -2.39 -0.02 1.37 16 36 H 0.09 1.73 7.40 -2.39 -0.02 1.71 16 37 H 0.06 2.39 8.08 -2.39 -0.02 2.37 16 38 H 0.09 2.82 8.01 -2.38 -0.02 2.80 16 39 H 0.07 4.00 5.88 -2.38 -0.01 3.99 16 40 H -0.02 -1.27 7.32 -2.39 -0.02 -1.29 16 41 H 0.24 15.05 8.31 -92.71 -0.77 14.27 16 42 H 0.02 1.13 3.67 -2.38 -0.01 1.12 16 43 H 0.00 -0.16 7.92 -2.39 -0.02 -0.18 16 44 H 0.11 2.56 8.09 -2.39 -0.02 2.54 16 45 H 0.05 2.18 5.95 -2.38 -0.01 2.16 16 Total: -1.00 -77.89 337.54 5.34 -72.54 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.00 Total: 9.30 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 4.78 Total: 13.54 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -3.80 Total: -115.05 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.04 Total: -23.51 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 1.38 Total: -8.18 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.03 Total: 51.36 kcal Total: -77.89 5.34 -72.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045907324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.137 kcal (2) G-P(sol) polarization free energy of solvation -77.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds