Wall clock time and date at job start Tue Mar 31 2020 11:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 110.88944 * 2 1 4 4 C 1.34780 * 120.00014 * 56.11480 * 3 2 1 5 5 O 1.21280 * 119.99899 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99788 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.46959 * 60.00386 * 6 4 3 8 8 C 1.52994 * 109.46894 * 300.00113 * 6 4 3 9 9 C 1.53008 * 109.46864 * 179.97438 * 8 6 4 10 10 C 1.53004 * 109.47001 * 60.00187 * 9 8 6 11 11 C 1.53000 * 109.46952 * 299.99866 * 10 9 8 12 12 C 1.53001 * 109.46663 * 180.02562 * 6 4 3 13 13 F 1.39896 * 109.47353 * 299.99630 * 12 6 4 14 14 F 1.39898 * 109.47393 * 60.00285 * 12 6 4 15 15 C 1.55159 * 111.00409 * 236.11637 * 2 1 3 16 16 C 1.54319 * 103.10229 * 206.33828 * 15 2 1 17 17 N 1.47491 * 107.03615 * 22.23825 * 16 15 2 18 18 C 1.36933 * 125.59247 * 181.00440 * 17 16 15 19 19 H 1.08002 * 120.00071 * 173.92297 * 18 17 16 20 20 C 1.38819 * 120.00158 * 353.92393 * 18 17 16 21 21 N 1.31614 * 119.99910 * 6.82296 * 20 18 17 22 22 Si 1.86799 * 119.99779 * 186.82932 * 20 18 17 23 23 H 1.48498 * 109.47163 * 94.98454 * 22 20 18 24 24 H 1.48507 * 109.46676 * 214.98393 * 22 20 18 25 25 H 1.48494 * 109.47389 * 334.98230 * 22 20 18 26 26 C 1.47420 * 108.75894 * 1.03046 * 17 16 15 27 27 H 1.08996 * 109.47145 * 183.88454 * 1 2 3 28 28 H 1.09002 * 109.46572 * 303.88357 * 1 2 3 29 29 H 1.08992 * 109.46703 * 63.88018 * 1 2 3 30 30 H 0.97005 * 119.99859 * 236.12534 * 3 2 1 31 31 H 1.09001 * 109.47540 * 299.99917 * 8 6 4 32 32 H 1.09004 * 109.47524 * 60.00549 * 8 6 4 33 33 H 1.08999 * 109.46900 * 299.99731 * 9 8 6 34 34 H 1.08999 * 109.46942 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.46799 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.47003 * 59.99685 * 10 9 8 37 37 H 1.08999 * 109.47055 * 300.00522 * 11 10 9 38 38 H 1.08997 * 109.47024 * 179.97438 * 11 10 9 39 39 H 1.09002 * 110.71401 * 324.78812 * 15 2 1 40 40 H 1.08997 * 110.72033 * 87.88056 * 15 2 1 41 41 H 1.08997 * 109.88367 * 141.69764 * 16 15 2 42 42 H 1.08999 * 109.88489 * 262.86548 * 16 15 2 43 43 H 0.96996 * 120.00338 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.36942 * 217.05488 * 26 17 16 45 45 H 1.09001 * 110.46680 * 94.77467 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.6847 2.2303 0.9690 5 8 0.9218 1.8724 1.8412 6 6 2.2217 3.6385 0.9686 7 1 1.9281 4.1390 0.0459 8 6 3.7481 3.6022 1.0659 9 6 4.2933 5.0318 1.0648 10 6 3.7239 5.7956 2.2621 11 6 2.1975 5.8318 2.1649 12 6 1.6527 4.4014 2.1666 13 9 0.2569 4.4346 2.0782 14 9 2.0299 3.7589 3.3506 15 6 2.0862 -0.8075 -1.2025 16 6 3.4691 -1.2740 -0.7010 17 7 3.4271 -1.2434 0.7730 18 6 4.4640 -1.5674 1.6067 19 1 4.3666 -1.4197 2.6721 20 6 5.6402 -2.0859 1.0825 21 7 5.8115 -2.1410 -0.2213 22 14 6.9797 -2.7053 2.2276 23 1 6.8329 -4.1713 2.4137 24 1 8.3104 -2.4120 1.6370 25 1 6.8608 -2.0251 3.5422 26 6 2.0853 -0.8071 1.2001 27 1 -0.3633 -1.0253 0.0696 28 1 -0.3632 0.5730 0.8532 29 1 -0.3632 0.4524 -0.9227 30 1 2.6629 1.6548 -0.6975 31 1 4.0417 3.1017 1.9886 32 1 4.1538 3.0585 0.2126 33 1 3.9998 5.5319 0.1419 34 1 5.3808 5.0060 1.1337 35 1 4.1120 6.8142 2.2611 36 1 4.0174 5.2954 3.1851 37 1 1.9040 6.3319 1.2419 38 1 1.7918 6.3755 3.0180 39 1 1.4468 -1.6627 -1.4214 40 1 2.1893 -0.1700 -2.0806 41 1 3.6664 -2.2883 -1.0479 42 1 4.2429 -0.5983 -1.0654 43 1 6.6335 -2.5029 -0.5876 44 1 2.1560 -0.1727 2.0836 45 1 1.4507 -1.6698 1.4031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046516928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:17 Heat of formation + Delta-G solvation = -124.525890 kcal Electronic energy + Delta-G solvation = -29000.470230 eV Core-core repulsion = 24881.639795 eV Total energy + Delta-G solvation = -4118.830436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.77742 -46.73693 -39.99920 -37.89684 -36.88425 -33.90933 -32.35980 -31.15377 -30.13022 -29.67373 -28.64586 -25.65641 -24.24721 -23.51532 -22.83025 -20.98005 -20.25321 -19.93973 -18.99549 -17.66566 -17.09160 -16.74450 -16.46448 -15.95520 -15.34787 -14.94013 -14.61550 -14.52151 -14.06424 -13.92268 -13.66629 -13.54911 -13.27934 -13.12404 -13.03001 -12.75292 -12.63328 -12.21873 -12.00612 -11.92304 -11.83886 -11.69249 -11.60367 -11.55413 -11.02437 -10.91724 -10.88585 -10.86188 -10.38384 -10.34538 -10.33974 -10.05916 -9.98961 -9.64109 -9.16870 -8.64053 -8.51032 -6.78401 -5.71393 -3.01770 2.88769 3.30433 3.41155 3.47277 3.48611 3.76074 3.92939 4.24568 4.36128 4.52125 4.73428 4.82222 4.90735 4.95287 4.99513 5.13745 5.20158 5.39391 5.42741 5.44999 5.47578 5.63058 5.64976 5.71458 5.74087 5.79608 5.90916 5.96266 6.05030 6.14491 6.18213 6.19356 6.39350 6.41392 6.56296 6.71739 6.83504 7.14398 7.51568 7.59452 7.80655 7.87607 8.26123 8.55117 9.23830 9.84388 10.51234 11.41265 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.004884 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.357371 B = 5731.708572 C = 6808.322703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 N -0.697 5.697 4 C 0.520 3.480 5 O -0.523 6.523 6 C -0.150 4.150 7 H 0.117 0.883 8 C -0.113 4.113 9 C -0.121 4.121 10 C -0.122 4.122 11 C -0.158 4.158 12 C 0.314 3.686 13 F -0.196 7.196 14 F -0.187 7.187 15 C -0.147 4.147 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.134 3.866 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.398 0.602 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.251 0.749 44 H 0.049 0.951 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 16.556 -2.447 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 N -0.347 5.347 4 C 0.305 3.695 5 O -0.399 6.399 6 C -0.173 4.173 7 H 0.135 0.865 8 C -0.150 4.150 9 C -0.159 4.159 10 C -0.159 4.159 11 C -0.196 4.196 12 C 0.277 3.723 13 F -0.176 7.176 14 F -0.168 7.168 15 C -0.185 4.185 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.207 1.207 26 C 0.007 3.993 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.232 0.768 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.872 16.174 -1.801 17.665 hybrid contribution 0.984 -0.363 0.210 1.070 sum -5.888 15.811 -1.591 16.946 Atomic orbital electron populations 1.22041 0.94230 1.02413 1.02498 1.21495 0.92717 0.80616 0.98084 1.45724 1.48546 1.11792 1.28669 1.19934 0.81382 0.86211 0.81991 1.90708 1.35173 1.77964 1.36084 1.22460 0.99450 0.95608 0.99749 0.86461 1.21557 0.90234 0.98094 1.05163 1.21611 1.01226 0.94756 0.98264 1.21557 0.92879 1.01529 0.99952 1.22565 0.98190 0.93592 1.05213 1.20562 0.76202 0.92757 0.82764 1.93014 1.31000 1.97225 1.96390 1.93029 1.90859 1.83688 1.49197 1.23223 1.00532 0.98927 0.95852 1.21235 0.89825 0.99950 0.83687 1.44541 1.07523 1.79152 1.01688 1.19069 0.91915 1.34443 0.89473 0.90637 1.24761 0.98137 1.01542 0.95961 1.69951 1.26377 1.51395 1.09412 0.86155 0.81275 0.78961 0.79790 1.21675 1.21861 1.20684 1.21856 0.87583 0.94893 0.94981 0.91919 0.90285 0.93284 0.76819 0.89850 0.89603 0.91376 0.90482 0.90496 0.90621 0.88884 0.89351 0.90874 0.91836 0.93488 0.94025 0.93898 0.93229 0.95685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.59 37.16 0.32 -2.13 16 2 C 0.16 2.81 0.83 -129.66 -0.11 2.70 16 3 N -0.70 -11.24 5.08 -45.62 -0.23 -11.47 16 4 C 0.52 8.68 6.30 -10.98 -0.07 8.61 16 5 O -0.52 -10.60 11.66 5.56 0.06 -10.54 16 6 C -0.15 -1.90 2.18 -91.77 -0.20 -2.10 16 7 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 8 C -0.11 -1.33 4.98 -26.73 -0.13 -1.46 16 9 C -0.12 -1.04 5.92 -26.72 -0.16 -1.20 16 10 C -0.12 -1.02 5.80 -26.73 -0.16 -1.18 16 11 C -0.16 -1.45 5.46 -26.70 -0.15 -1.59 16 12 C 0.31 4.24 1.37 -26.70 -0.04 4.20 16 13 F -0.20 -3.04 16.14 2.25 0.04 -3.00 16 14 F -0.19 -3.14 15.11 2.25 0.03 -3.10 16 15 C -0.15 -2.59 5.96 -24.90 -0.15 -2.73 16 16 C 0.18 4.14 5.39 -2.81 -0.02 4.12 16 17 N -0.60 -15.35 3.41 -169.70 -0.58 -15.92 16 18 C -0.22 -6.22 10.26 -15.06 -0.15 -6.37 16 19 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 20 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 21 N -0.92 -26.66 10.36 55.49 0.58 -26.08 16 22 Si 0.91 22.29 29.56 -169.99 -5.02 17.27 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.13 2.98 6.17 -2.53 -0.02 2.96 16 27 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.08 1.41 5.92 -51.93 -0.31 1.10 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.40 5.59 7.93 -40.82 -0.32 5.26 16 31 H 0.08 1.22 7.80 -51.93 -0.41 0.81 16 32 H 0.09 1.00 7.56 -51.93 -0.39 0.61 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.74 7.80 -51.93 -0.41 0.33 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 40 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 41 H 0.05 1.23 7.37 -51.93 -0.38 0.85 16 42 H 0.04 1.04 7.56 -51.93 -0.39 0.65 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.05 1.20 6.86 -51.93 -0.36 0.85 16 45 H 0.03 0.57 7.98 -51.93 -0.41 0.15 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -33.10 351.45 -8.09 -41.19 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.14 Total: 2.87 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.12 Total: 3.50 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.23 Total: -53.48 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.06 Total: -10.54 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.07 Total: -6.11 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.10 -8.09 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046516928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.339 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds