Wall clock time and date at job start Tue Mar 31 2020 11:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 110.64247 * 2 1 4 4 C 1.34779 * 119.99687 * 298.31262 * 3 2 1 5 5 O 1.21281 * 119.99819 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00062 * 180.02562 * 4 3 2 7 7 H 1.09009 * 109.46856 * 299.99911 * 6 4 3 8 8 C 1.52999 * 109.47290 * 59.99451 * 6 4 3 9 9 C 1.53002 * 109.46954 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47491 * 300.00227 * 9 8 6 11 11 C 1.53003 * 109.46609 * 60.00130 * 10 9 8 12 12 C 1.52998 * 109.47239 * 180.02562 * 6 4 3 13 13 F 1.39905 * 109.46809 * 299.99531 * 12 6 4 14 14 F 1.39892 * 109.47573 * 59.99491 * 12 6 4 15 15 C 1.55160 * 110.87471 * 123.24541 * 2 1 3 16 16 C 1.54904 * 101.58372 * 153.93782 * 15 2 1 17 17 N 1.47430 * 104.83193 * 322.98895 * 16 15 2 18 18 C 1.36937 * 125.64953 * 204.09586 * 17 16 15 19 19 H 1.07997 * 119.99873 * 169.98931 * 18 17 16 20 20 C 1.38808 * 119.99939 * 349.98356 * 18 17 16 21 21 N 1.31619 * 120.00309 * 350.42255 * 20 18 17 22 22 Si 1.86805 * 119.99953 * 170.42377 * 20 18 17 23 23 H 1.48496 * 109.47253 * 94.13903 * 22 20 18 24 24 H 1.48495 * 109.47090 * 214.13923 * 22 20 18 25 25 H 1.48499 * 109.46947 * 334.14269 * 22 20 18 26 26 C 1.47023 * 108.70113 * 24.13242 * 17 16 15 27 27 H 1.08996 * 109.47173 * 59.30043 * 1 2 3 28 28 H 1.08994 * 109.46873 * 179.30430 * 1 2 3 29 29 H 1.09007 * 109.46852 * 299.29871 * 1 2 3 30 30 H 0.97000 * 120.00437 * 118.30934 * 3 2 1 31 31 H 1.08997 * 109.47468 * 300.00321 * 8 6 4 32 32 H 1.08999 * 109.46866 * 60.00555 * 8 6 4 33 33 H 1.08999 * 109.46763 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.46818 * 60.00603 * 9 8 6 35 35 H 1.08996 * 109.46810 * 300.00465 * 10 9 8 36 36 H 1.08997 * 109.46652 * 179.97438 * 10 9 8 37 37 H 1.08999 * 109.46383 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.47663 * 60.00279 * 11 10 9 39 39 H 1.09005 * 111.00637 * 272.01271 * 15 2 1 40 40 H 1.09002 * 111.00176 * 35.85762 * 15 2 1 41 41 H 1.08997 * 110.36877 * 204.15187 * 16 15 2 42 42 H 1.08998 * 110.46399 * 81.87415 * 16 15 2 43 43 H 0.97004 * 120.00152 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.87883 * 239.52202 * 26 17 16 45 45 H 1.08996 * 110.01082 * 118.42627 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.7659 2.1967 -1.0276 5 8 1.0864 1.8046 -1.9525 6 6 2.2976 3.6068 -1.0280 7 1 1.9209 4.1373 -0.1534 8 6 3.8267 3.5753 -0.9858 9 6 4.3665 5.0070 -0.9868 10 6 3.9060 5.7248 -2.2571 11 6 2.3768 5.7563 -2.2991 12 6 1.8365 4.3254 -2.2976 13 9 2.3196 3.6446 -3.4203 14 9 0.4384 4.3542 -2.3356 15 6 2.0829 -0.7948 1.2125 16 6 3.4674 -1.2454 0.6838 17 7 3.2471 -1.5462 -0.7426 18 6 4.0077 -2.3901 -1.5070 19 1 3.6748 -2.6712 -2.4952 20 6 5.2066 -2.8843 -1.0118 21 7 5.7063 -2.4007 0.1057 22 14 6.1109 -4.2356 -1.9315 23 1 7.1217 -3.6290 -2.8344 24 1 6.7892 -5.1285 -0.9580 25 1 5.1405 -5.0235 -2.7332 26 6 2.0760 -0.7892 -1.2086 27 1 -0.3633 0.5246 -0.8836 28 1 -0.3633 -1.0275 -0.0125 29 1 -0.3633 0.5029 0.8963 30 1 2.5902 1.6845 0.7395 31 1 4.1548 3.0635 -0.0811 32 1 4.2034 3.0448 -1.8603 33 1 5.4559 4.9845 -0.9573 34 1 3.9898 5.5378 -0.1126 35 1 4.2826 5.1938 -3.1313 36 1 4.2902 6.7448 -2.2575 37 1 2.0488 6.2681 -3.2038 38 1 2.0001 6.2872 -1.4249 39 1 2.1887 -0.1514 2.0860 40 1 1.4515 -1.6545 1.4367 41 1 3.8032 -2.1377 1.2121 42 1 4.1970 -0.4431 0.7940 43 1 6.5444 -2.7458 0.4515 44 1 1.3141 -1.4755 -1.5780 45 1 2.3687 -0.0993 -2.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046516929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:20 Heat of formation + Delta-G solvation = -125.025925 kcal Electronic energy + Delta-G solvation = -28853.613971 eV Core-core repulsion = 24734.761852 eV Total energy + Delta-G solvation = -4118.852119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.80111 -46.75857 -40.06207 -37.93809 -36.90786 -33.98810 -32.36659 -31.18105 -30.16696 -29.66764 -28.66005 -25.68444 -24.28632 -23.49430 -22.85805 -20.96577 -20.39468 -20.01391 -18.96307 -17.67778 -17.10880 -16.75809 -16.49631 -15.98281 -15.38176 -14.97674 -14.64096 -14.54297 -14.10518 -13.94765 -13.71092 -13.53224 -13.25689 -13.09552 -13.03700 -12.79581 -12.63243 -12.26491 -12.17112 -12.03418 -11.74870 -11.67518 -11.60471 -11.56466 -11.07111 -10.96170 -10.92498 -10.79318 -10.42800 -10.38625 -10.36122 -10.07577 -9.96453 -9.66787 -9.22989 -8.62539 -8.55039 -6.75080 -5.72638 -3.03179 2.85208 3.25537 3.41716 3.47491 3.50148 3.72657 3.90087 4.21055 4.32328 4.52817 4.69628 4.78276 4.86791 4.91803 4.95637 5.10907 5.18482 5.37929 5.39269 5.41203 5.50089 5.56658 5.61170 5.67556 5.74199 5.75098 5.86414 5.90619 6.03414 6.12279 6.16096 6.21022 6.33851 6.43432 6.52645 6.71841 6.88192 7.16896 7.46787 7.54868 7.78521 7.81817 8.28450 8.50953 9.23177 9.84821 10.52511 11.41016 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015805 B = 0.004304 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.215159 B = 6503.399018 C = 7214.495884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 N -0.704 5.704 4 C 0.519 3.481 5 O -0.519 6.519 6 C -0.151 4.151 7 H 0.118 0.882 8 C -0.113 4.113 9 C -0.121 4.121 10 C -0.122 4.122 11 C -0.158 4.158 12 C 0.314 3.686 13 F -0.187 7.187 14 F -0.195 7.195 15 C -0.148 4.148 16 C 0.175 3.825 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.075 0.925 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.136 3.864 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.397 0.603 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.251 0.749 44 H 0.029 0.971 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 17.885 2.944 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.075 3.925 3 N -0.355 5.355 4 C 0.303 3.697 5 O -0.394 6.394 6 C -0.173 4.173 7 H 0.136 0.864 8 C -0.151 4.151 9 C -0.158 4.158 10 C -0.159 4.159 11 C -0.196 4.196 12 C 0.277 3.723 13 F -0.168 7.168 14 F -0.176 7.176 15 C -0.186 4.186 16 C 0.050 3.950 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.093 0.907 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.009 3.991 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.231 0.769 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.153 17.436 2.245 18.626 hybrid contribution 0.739 -0.590 -0.153 0.958 sum -5.414 16.847 2.091 17.818 Atomic orbital electron populations 1.22034 0.94279 1.02269 1.02230 1.21328 0.92927 0.80312 0.97918 1.45887 1.53902 1.12717 1.23019 1.19951 0.80669 0.86318 0.82716 1.90744 1.37920 1.76235 1.34503 1.22466 0.99858 0.95883 0.99088 0.86382 1.21561 0.90383 0.98205 1.04953 1.21609 1.01586 0.94858 0.97792 1.21557 0.93168 1.01758 0.99449 1.22547 0.98206 0.93572 1.05268 1.20540 0.75483 0.92310 0.83963 1.93035 1.87558 1.81997 1.54178 1.93017 1.30522 1.97210 1.96831 1.23344 1.01094 0.99005 0.95206 1.21382 0.89427 0.99382 0.84858 1.44478 1.30829 1.50806 1.06744 1.19044 0.99469 1.18263 0.98322 0.90724 1.24770 0.96812 1.00684 0.98165 1.69940 1.20558 1.44053 1.22394 0.86143 0.79605 0.81696 0.78608 1.21699 1.21659 1.20604 1.21606 0.90359 0.93117 0.93989 0.90979 0.91746 0.93175 0.76924 0.89687 0.89895 0.90474 0.91329 0.90602 0.90453 0.89298 0.88884 0.91802 0.90542 0.91237 0.95715 0.93861 0.95277 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.45 37.16 0.31 -2.08 16 2 C 0.16 2.88 0.81 -129.98 -0.11 2.78 16 3 N -0.70 -11.04 5.04 -45.91 -0.23 -11.27 16 4 C 0.52 8.54 6.15 -10.98 -0.07 8.47 16 5 O -0.52 -10.57 11.75 5.56 0.07 -10.50 16 6 C -0.15 -1.85 2.18 -91.77 -0.20 -2.05 16 7 H 0.12 1.08 8.14 -51.92 -0.42 0.66 16 8 C -0.11 -1.26 4.98 -26.73 -0.13 -1.40 16 9 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 10 C -0.12 -0.98 5.80 -26.73 -0.16 -1.13 16 11 C -0.16 -1.41 5.45 -26.76 -0.15 -1.55 16 12 C 0.31 4.17 1.37 -26.76 -0.04 4.13 16 13 F -0.19 -3.12 15.10 2.25 0.03 -3.08 16 14 F -0.20 -3.01 16.15 2.25 0.04 -2.97 16 15 C -0.15 -2.61 6.09 -24.58 -0.15 -2.76 16 16 C 0.17 4.08 5.40 -2.53 -0.01 4.07 16 17 N -0.60 -15.67 3.39 -170.08 -0.58 -16.25 16 18 C -0.22 -6.38 10.24 -15.06 -0.15 -6.53 16 19 H 0.07 2.12 7.85 -52.49 -0.41 1.71 16 20 C -0.01 -0.24 5.40 -17.43 -0.09 -0.33 16 21 N -0.92 -26.85 10.68 55.49 0.59 -26.26 16 22 Si 0.91 22.41 29.56 -169.99 -5.03 17.39 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.14 3.10 6.13 -3.06 -0.02 3.08 16 27 H 0.07 1.27 6.38 -51.93 -0.33 0.94 16 28 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.40 5.17 7.89 -40.82 -0.32 4.85 16 31 H 0.08 0.90 7.56 -51.93 -0.39 0.51 16 32 H 0.08 1.16 7.80 -51.93 -0.41 0.75 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.71 7.80 -51.93 -0.41 0.31 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 40 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 41 H 0.07 1.82 6.93 -51.93 -0.36 1.46 16 42 H 0.02 0.61 8.07 -51.93 -0.42 0.20 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.03 0.68 7.80 -51.93 -0.41 0.27 16 45 H 0.04 0.90 6.47 -51.93 -0.34 0.57 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -33.91 351.45 -8.07 -41.98 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.14 Total: 2.11 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.12 Total: 3.56 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.22 Total: -53.78 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.07 Total: -6.05 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.91 -8.07 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046516929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.046 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds