Wall clock time and date at job start Tue Mar 31 2020 11:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 110.63973 * 2 1 4 4 C 1.34775 * 120.00169 * 61.68825 * 3 2 1 5 5 O 1.21275 * 119.99840 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99793 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.47140 * 60.00561 * 6 4 3 8 8 C 1.53005 * 109.46925 * 179.97438 * 6 4 3 9 9 C 1.53007 * 109.47055 * 179.97438 * 8 6 4 10 10 C 1.52992 * 109.47365 * 300.00615 * 9 8 6 11 11 C 1.52996 * 109.47743 * 59.99759 * 10 9 8 12 12 C 1.52994 * 109.47532 * 300.00100 * 6 4 3 13 13 F 1.39898 * 109.47371 * 300.00235 * 12 6 4 14 14 F 1.39896 * 109.47341 * 59.99944 * 12 6 4 15 15 C 1.55159 * 110.87083 * 236.74872 * 2 1 3 16 16 C 1.54909 * 101.57990 * 206.06082 * 15 2 1 17 17 N 1.47743 * 104.83995 * 37.09908 * 16 15 2 18 18 C 1.36946 * 125.82120 * 155.82347 * 17 16 15 19 19 H 1.08000 * 119.99920 * 179.90231 * 18 17 16 20 20 C 1.38814 * 119.99867 * 359.91271 * 18 17 16 21 21 N 1.31617 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99829 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47105 * 89.99400 * 22 20 18 24 24 H 1.48501 * 109.47179 * 209.99958 * 22 20 18 25 25 H 1.48502 * 109.47052 * 329.99719 * 22 20 18 26 26 C 1.47020 * 108.53125 * 335.74644 * 17 16 15 27 27 H 1.08998 * 109.46692 * 298.31297 * 1 2 3 28 28 H 1.08997 * 109.47070 * 58.30960 * 1 2 3 29 29 H 1.09002 * 109.47183 * 178.31344 * 1 2 3 30 30 H 0.97000 * 119.99632 * 241.68423 * 3 2 1 31 31 H 1.08997 * 109.47278 * 300.00075 * 8 6 4 32 32 H 1.09005 * 109.46669 * 60.00375 * 8 6 4 33 33 H 1.09009 * 109.46480 * 60.00519 * 9 8 6 34 34 H 1.09004 * 109.46813 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.46961 * 179.97438 * 10 9 8 36 36 H 1.09005 * 109.47172 * 299.99950 * 10 9 8 37 37 H 1.09009 * 109.47014 * 59.99537 * 11 10 9 38 38 H 1.08997 * 109.47485 * 180.02562 * 11 10 9 39 39 H 1.08994 * 111.00854 * 324.14128 * 15 2 1 40 40 H 1.09006 * 111.00035 * 87.99146 * 15 2 1 41 41 H 1.09003 * 110.36363 * 155.85234 * 16 15 2 42 42 H 1.08996 * 110.37070 * 278.06073 * 16 15 2 43 43 H 0.96998 * 119.99524 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.88367 * 241.68734 * 26 17 16 45 45 H 1.09000 * 109.88319 * 120.67352 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.7660 2.1968 1.0276 5 8 1.0865 1.8047 1.9524 6 6 2.2977 3.6068 1.0277 7 1 1.9209 4.1373 0.1532 8 6 1.8366 4.3255 2.2973 9 6 2.3770 5.7570 2.2979 10 6 3.9060 5.7249 2.2566 11 6 4.3671 5.0063 0.9871 12 6 3.8267 3.5753 0.9856 13 9 4.3103 2.8945 2.1080 14 9 4.2479 2.9184 -0.1755 15 6 2.0828 -0.7949 -1.2124 16 6 3.4674 -1.2455 -0.6837 17 7 3.2464 -1.5488 0.7453 18 6 4.0040 -2.3938 1.5118 19 1 3.7576 -2.5460 2.5522 20 6 5.0886 -3.0544 0.9514 21 7 5.3886 -2.8691 -0.3166 22 14 6.1224 -4.2065 1.9971 23 1 5.5631 -5.5800 1.9211 24 1 7.5195 -4.2122 1.4939 25 1 6.1064 -3.7429 3.4079 26 6 2.0761 -0.7891 1.2086 27 1 -0.3633 0.4874 0.9047 28 1 -0.3633 0.5398 -0.8744 29 1 -0.3634 -1.0272 -0.0302 30 1 2.5903 1.6843 -0.7396 31 1 0.7473 4.3480 2.3269 32 1 2.2130 3.7951 3.1721 33 1 2.0009 6.2875 1.4230 34 1 2.0481 6.2691 3.2022 35 1 4.2909 6.7447 2.2565 36 1 4.2821 5.1943 3.1313 37 1 3.9910 5.5369 0.1122 38 1 5.4565 4.9831 0.9579 39 1 1.4515 -1.6547 -1.4366 40 1 2.1887 -0.1515 -2.0859 41 1 3.8032 -2.1378 -1.2120 42 1 4.1960 -0.4426 -0.7958 43 1 6.1463 -3.3311 -0.7082 44 1 2.3712 -0.0991 1.9991 45 1 1.3131 -1.4734 1.5798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046516931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:28 Heat of formation + Delta-G solvation = -122.128263 kcal Electronic energy + Delta-G solvation = -29170.890027 eV Core-core repulsion = 25052.163560 eV Total energy + Delta-G solvation = -4118.726467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.97607 -46.92657 -40.03762 -38.01095 -36.79763 -33.95003 -32.19876 -31.26588 -30.31270 -29.57626 -28.59968 -25.62173 -24.32018 -23.37239 -22.91855 -20.98105 -20.31989 -19.96225 -18.99543 -17.66908 -17.23999 -16.74586 -16.62394 -16.09713 -15.60565 -14.76524 -14.59182 -14.35632 -14.18789 -14.07143 -13.62997 -13.56796 -13.29725 -13.21831 -13.06238 -12.75342 -12.67937 -12.31871 -12.14133 -11.94929 -11.84661 -11.68560 -11.52498 -11.48184 -11.09257 -10.94487 -10.87315 -10.79492 -10.50516 -10.30237 -10.27665 -10.02491 -9.86114 -9.58688 -9.23003 -8.59471 -8.55992 -6.72046 -5.57153 -2.96697 2.71236 3.31736 3.46056 3.50726 3.53392 3.68097 3.97865 4.06411 4.27662 4.56871 4.65527 4.73806 4.78760 4.93834 4.95946 5.08871 5.23358 5.35273 5.40818 5.45285 5.56069 5.57770 5.62455 5.65093 5.75329 5.78693 5.82417 5.92786 6.06525 6.14282 6.20077 6.27982 6.40621 6.50553 6.55522 6.75829 6.90086 7.20312 7.55381 7.70848 7.83442 7.91808 8.42270 8.50330 9.30926 9.92031 10.57765 11.47707 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.004759 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.177789 B = 5881.958970 C = 6695.926122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 N -0.702 5.702 4 C 0.518 3.482 5 O -0.526 6.526 6 C -0.149 4.149 7 H 0.120 0.880 8 C -0.099 4.099 9 C -0.123 4.123 10 C -0.122 4.122 11 C -0.156 4.156 12 C 0.299 3.701 13 F -0.186 7.186 14 F -0.194 7.194 15 C -0.146 4.146 16 C 0.153 3.847 17 N -0.603 5.603 18 C -0.215 4.215 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.925 5.925 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.137 3.863 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.400 0.600 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.012 0.988 43 H 0.250 0.750 44 H 0.034 0.966 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.790 19.461 -1.375 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.072 3.928 3 N -0.354 5.354 4 C 0.302 3.698 5 O -0.403 6.403 6 C -0.172 4.172 7 H 0.138 0.862 8 C -0.137 4.137 9 C -0.161 4.161 10 C -0.159 4.159 11 C -0.194 4.194 12 C 0.262 3.738 13 F -0.167 7.167 14 F -0.174 7.174 15 C -0.185 4.185 16 C 0.028 3.972 17 N -0.329 5.329 18 C -0.343 4.343 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.574 5.574 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.011 3.989 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.236 0.764 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.030 0.970 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.061 18.979 -0.722 20.263 hybrid contribution 1.064 -0.552 0.037 1.200 sum -5.997 18.427 -0.684 19.390 Atomic orbital electron populations 1.22023 0.94287 1.02177 1.02146 1.21381 0.92875 0.80386 0.98196 1.46140 1.53306 1.12776 1.23170 1.19969 0.80988 0.86230 0.82636 1.90667 1.38684 1.76238 1.34675 1.22460 0.93566 0.97099 1.04031 0.86245 1.21365 1.02133 0.94525 0.95693 1.21646 0.95074 0.96542 1.02808 1.21558 0.96281 1.00956 0.97152 1.22533 1.03250 0.92223 1.01424 1.20847 0.91827 0.88836 0.72282 1.93075 1.89429 1.82036 1.52155 1.93001 1.91414 1.83329 1.49691 1.23344 1.01334 0.98758 0.95047 1.21968 0.89370 1.00610 0.85233 1.44548 1.30583 1.50280 1.07465 1.19089 1.06063 1.16261 0.92890 0.90610 1.24740 0.98746 1.00834 0.96471 1.69778 1.30059 1.46506 1.11069 0.86081 0.79564 0.80721 0.79248 1.21660 1.21724 1.20800 1.21580 0.90303 0.93117 0.93946 0.91130 0.93191 0.91705 0.76383 0.89777 0.89951 0.91461 0.90674 0.90424 0.90608 0.88705 0.89049 0.90520 0.91978 0.87524 0.97010 0.93892 0.94840 0.95340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.41 37.16 0.31 -2.08 16 2 C 0.16 2.97 0.81 -129.98 -0.11 2.87 16 3 N -0.70 -11.97 4.83 -45.91 -0.22 -12.19 16 4 C 0.52 8.61 6.11 -10.99 -0.07 8.54 16 5 O -0.53 -10.23 12.92 5.56 0.07 -10.16 16 6 C -0.15 -1.82 2.23 -91.77 -0.20 -2.03 16 7 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 8 C -0.10 -1.07 4.37 -26.73 -0.12 -1.19 16 9 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 10 C -0.12 -0.95 5.80 -26.74 -0.16 -1.11 16 11 C -0.16 -1.41 5.45 -26.75 -0.15 -1.56 16 12 C 0.30 3.98 1.63 -26.76 -0.04 3.94 16 13 F -0.19 -3.23 15.73 2.25 0.04 -3.20 16 14 F -0.19 -2.95 14.84 2.25 0.03 -2.91 16 15 C -0.15 -2.79 6.09 -24.58 -0.15 -2.94 16 16 C 0.15 3.81 5.89 -2.35 -0.01 3.80 16 17 N -0.60 -16.38 3.41 -169.81 -0.58 -16.96 16 18 C -0.21 -6.34 10.28 -15.05 -0.15 -6.49 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 20 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 21 N -0.92 -27.70 10.11 55.49 0.56 -27.14 16 22 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.14 3.24 6.12 -3.06 -0.02 3.22 16 27 H 0.07 1.22 6.44 -51.93 -0.33 0.88 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.40 6.27 6.64 -40.82 -0.27 6.00 16 31 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.08 1.08 7.76 -51.93 -0.40 0.68 16 33 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.70 7.80 -51.93 -0.41 0.29 16 37 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 40 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 41 H 0.11 2.96 5.88 -51.93 -0.31 2.66 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.03 0.87 6.47 -51.93 -0.34 0.53 16 45 H 0.03 0.68 7.82 -51.93 -0.41 0.27 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -34.03 349.74 -8.04 -42.06 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.07 Total: 3.82 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.12 Total: 3.41 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.24 Total: -56.29 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.07 Total: -6.11 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.03 -8.04 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046516931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.067 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds