Wall clock time and date at job start Tue Mar 31 2020 11:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 110.77887 * 2 1 4 4 C 1.34770 * 120.00272 * 56.76197 * 3 2 1 5 5 O 1.21289 * 119.99992 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00240 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.47240 * 300.00281 * 6 4 3 8 8 C 1.53006 * 109.46586 * 59.99940 * 6 4 3 9 9 C 1.53003 * 109.46850 * 179.97438 * 8 6 4 10 10 C 1.53004 * 109.47312 * 300.00314 * 9 8 6 11 11 C 1.52995 * 109.47269 * 59.99748 * 10 9 8 12 12 F 1.39892 * 109.47210 * 179.97438 * 11 10 9 13 13 F 1.39907 * 109.46989 * 60.00028 * 11 10 9 14 14 C 1.52997 * 109.47358 * 179.97438 * 6 4 3 15 15 C 1.55151 * 110.71783 * 236.75936 * 2 1 3 16 16 C 1.54917 * 101.58025 * 206.13747 * 15 2 1 17 17 N 1.47421 * 104.83002 * 37.01304 * 16 15 2 18 18 C 1.36934 * 125.64880 * 155.91318 * 17 16 15 19 19 H 1.08003 * 120.00238 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99973 * 359.96416 * 18 17 16 21 21 N 1.31618 * 120.00207 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00168 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46813 * 90.00297 * 22 20 18 24 24 H 1.48498 * 109.47523 * 210.00481 * 22 20 18 25 25 H 1.48502 * 109.47237 * 330.00853 * 22 20 18 26 26 C 1.47021 * 108.70450 * 335.86832 * 17 16 15 27 27 H 1.08998 * 109.47698 * 183.23679 * 1 2 3 28 28 H 1.09001 * 109.47548 * 303.24157 * 1 2 3 29 29 H 1.09000 * 109.47333 * 63.23900 * 1 2 3 30 30 H 0.96999 * 119.99559 * 236.75271 * 3 2 1 31 31 H 1.08996 * 109.47535 * 300.00128 * 8 6 4 32 32 H 1.09001 * 109.47053 * 60.00226 * 8 6 4 33 33 H 1.09001 * 109.46992 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.47077 * 60.00278 * 9 8 6 35 35 H 1.09000 * 109.46501 * 299.99958 * 10 9 8 36 36 H 1.08997 * 109.47049 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.47432 * 300.00479 * 14 6 4 38 38 H 1.09001 * 109.46850 * 60.00505 * 14 6 4 39 39 H 1.08998 * 111.00631 * 88.06584 * 15 2 1 40 40 H 1.09004 * 111.00792 * 324.20982 * 15 2 1 41 41 H 1.09002 * 110.36419 * 155.85111 * 16 15 2 42 42 H 1.08994 * 110.36559 * 278.05860 * 16 15 2 43 43 H 0.96992 * 120.00536 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.88310 * 120.48076 * 26 17 16 45 45 H 1.09002 * 109.88672 * 241.49116 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0497 1.3697 0.0000 4 6 1.6907 2.2267 0.9762 5 8 0.9369 1.8642 1.8545 6 6 2.2258 3.6355 0.9765 7 1 3.3139 3.6109 1.0348 8 6 1.7999 4.3430 -0.3116 9 6 2.3426 5.7735 -0.3111 10 6 1.7838 6.5306 0.8953 11 6 2.2095 5.8231 2.1834 12 9 1.6990 6.5157 3.2864 13 9 3.6062 5.7920 2.2585 14 6 1.6669 4.3931 2.1825 15 6 2.0789 -0.7955 -1.2137 16 6 3.4632 -1.2499 -0.6874 17 7 3.2443 -1.5508 0.7391 18 6 4.0041 -2.3970 1.5019 19 1 3.7609 -2.5509 2.5429 20 6 5.0867 -3.0572 0.9372 21 7 5.3834 -2.8695 -0.3313 22 14 6.1236 -4.2110 1.9779 23 1 5.5637 -5.5843 1.9016 24 1 7.5191 -4.2164 1.4702 25 1 6.1122 -3.7495 3.3894 26 6 2.0759 -0.7912 1.2073 27 1 -0.3634 -1.0260 0.0580 28 1 -0.3634 0.5633 0.8595 29 1 -0.3634 0.4627 -0.9176 30 1 2.6524 1.6597 -0.7026 31 1 2.1977 3.8034 -1.1711 32 1 0.7118 4.3676 -0.3699 33 1 2.0389 6.2777 -1.2285 34 1 3.4308 5.7493 -0.2526 35 1 0.6956 6.5548 0.8367 36 1 2.1700 7.5498 0.8954 37 1 0.5788 4.4177 2.1238 38 1 1.9700 3.8892 3.1003 39 1 2.1850 -0.1519 -2.0870 40 1 1.4451 -1.6536 -1.4375 41 1 3.7959 -2.1427 -1.2168 42 1 4.1935 -0.4487 -0.8002 43 1 6.1401 -3.3305 -0.7259 44 1 1.3128 -1.4758 1.5776 45 1 2.3734 -0.1044 1.9997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046613477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:32 Heat of formation + Delta-G solvation = -127.927306 kcal Electronic energy + Delta-G solvation = -28084.761595 eV Core-core repulsion = 23965.783663 eV Total energy + Delta-G solvation = -4118.977932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.11798 -47.10242 -40.28775 -38.08749 -36.75383 -34.04630 -32.22126 -31.36883 -30.33663 -29.61879 -28.67912 -25.69746 -24.53086 -23.49796 -23.01102 -21.07698 -20.35622 -19.99497 -19.03750 -17.91720 -17.06960 -16.90562 -16.57498 -15.92462 -15.64255 -15.33405 -14.88845 -14.66688 -14.16345 -14.07926 -13.75192 -13.49254 -13.43096 -13.38599 -13.00225 -12.94521 -12.72426 -12.46011 -12.26727 -12.12822 -11.96248 -11.73035 -11.58020 -11.48927 -11.17055 -11.08646 -10.94757 -10.85515 -10.62390 -10.40623 -10.34764 -10.09206 -9.94070 -9.66064 -9.22325 -8.68506 -8.62815 -6.82092 -5.65783 -3.06186 2.82506 3.22919 3.40718 3.45988 3.48021 3.60214 3.95893 4.01998 4.15136 4.49725 4.53753 4.61806 4.75781 4.87981 4.90290 5.06067 5.14226 5.25091 5.37845 5.45285 5.47544 5.49118 5.56042 5.57812 5.64770 5.70063 5.72556 5.83937 5.95223 6.03407 6.15157 6.20968 6.34797 6.44206 6.50043 6.68891 6.80673 7.11479 7.43309 7.62981 7.77648 7.84607 8.34486 8.47503 9.22772 9.83441 10.48002 11.38590 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017492 B = 0.003465 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.327768 B = 8079.938427 C = 8690.569855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.159 3.841 3 N -0.704 5.704 4 C 0.522 3.478 5 O -0.537 6.537 6 C -0.108 4.108 7 H 0.107 0.893 8 C -0.115 4.115 9 C -0.118 4.118 10 C -0.159 4.159 11 C 0.289 3.711 12 F -0.202 7.202 13 F -0.199 7.199 14 C -0.137 4.137 15 C -0.146 4.146 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.219 4.219 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.925 5.925 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.137 3.863 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.398 0.602 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.010 0.990 43 H 0.251 0.749 44 H 0.030 0.970 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 18.250 -3.894 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.073 3.927 3 N -0.354 5.354 4 C 0.308 3.692 5 O -0.414 6.414 6 C -0.129 4.129 7 H 0.125 0.875 8 C -0.153 4.153 9 C -0.155 4.155 10 C -0.197 4.197 11 C 0.253 3.747 12 F -0.183 7.183 13 F -0.180 7.180 14 C -0.175 4.175 15 C -0.185 4.185 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.347 4.347 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.574 5.574 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.011 3.989 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.232 0.768 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.028 0.972 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -9.123 17.847 -3.236 20.303 hybrid contribution 1.083 -0.328 0.400 1.200 sum -8.040 17.519 -2.836 19.483 Atomic orbital electron populations 1.22063 0.94162 1.02458 1.02297 1.21349 0.93054 0.80391 0.97891 1.45963 1.49241 1.12080 1.28159 1.20166 0.81022 0.86428 0.81589 1.90664 1.36092 1.78294 1.36373 1.21280 1.02936 0.92842 0.95889 0.87539 1.21622 1.01959 0.95473 0.96228 1.21518 1.01743 0.94980 0.97270 1.22543 1.03665 1.00586 0.92861 1.21104 0.75310 0.93470 0.84864 1.93005 1.86942 1.81377 1.56972 1.93006 1.30882 1.97325 1.96776 1.22268 1.03267 0.91440 1.00547 1.23357 1.01264 0.98845 0.95076 1.21931 0.89353 1.00650 0.85307 1.44499 1.30753 1.50299 1.07442 1.19100 1.06118 1.16509 0.92971 0.90560 1.24751 0.98754 1.00719 0.96462 1.69768 1.30180 1.46474 1.10968 0.86074 0.79532 0.80743 0.79198 1.21593 1.21671 1.20762 1.21598 0.90304 0.93126 0.93894 0.91842 0.90523 0.93261 0.76795 0.90270 0.90747 0.90035 0.90478 0.88686 0.89468 0.88054 0.88593 0.91920 0.90553 0.87460 0.97194 0.93805 0.95255 0.95235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.43 37.16 0.31 -2.00 16 2 C 0.16 2.75 0.81 -129.99 -0.11 2.65 16 3 N -0.70 -10.41 5.04 -45.92 -0.23 -10.64 16 4 C 0.52 7.69 6.38 -10.99 -0.07 7.62 16 5 O -0.54 -9.63 12.96 5.55 0.07 -9.56 16 6 C -0.11 -1.19 2.41 -91.77 -0.22 -1.41 16 7 H 0.11 1.20 7.80 -51.93 -0.41 0.79 16 8 C -0.12 -0.90 5.10 -26.73 -0.14 -1.04 16 9 C -0.12 -0.78 5.80 -26.73 -0.16 -0.93 16 10 C -0.16 -1.16 5.45 -26.73 -0.15 -1.31 16 11 C 0.29 3.01 2.10 -26.76 -0.06 2.95 16 12 F -0.20 -2.41 17.06 2.25 0.04 -2.37 16 13 F -0.20 -2.42 16.03 2.25 0.04 -2.39 16 14 C -0.14 -1.53 4.02 -26.76 -0.11 -1.64 16 15 C -0.15 -2.58 6.07 -24.58 -0.15 -2.73 16 16 C 0.15 3.55 5.87 -2.53 -0.01 3.54 16 17 N -0.60 -15.55 3.39 -170.07 -0.58 -16.12 16 18 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 19 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 20 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.14 3.04 6.19 -3.06 -0.02 3.02 16 27 H 0.06 0.95 8.06 -51.93 -0.42 0.54 16 28 H 0.08 1.27 5.97 -51.93 -0.31 0.96 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.40 5.03 7.91 -40.82 -0.32 4.71 16 31 H 0.08 0.55 7.56 -51.93 -0.39 0.16 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.55 7.80 -51.93 -0.41 0.15 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 40 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 41 H 0.11 2.84 5.88 -51.93 -0.31 2.53 16 42 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.03 0.67 7.76 -51.93 -0.40 0.26 16 45 H 0.03 0.71 6.91 -51.93 -0.36 0.35 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -32.08 352.80 -8.01 -40.09 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.08 Total: 2.57 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.12 Total: 1.94 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.25 Total: -52.86 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.07 Total: -4.75 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.08 -8.01 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046613477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.837 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds