Wall clock time and date at job start Tue Mar 31 2020 11:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 110.63889 * 2 1 4 4 C 1.34786 * 120.00011 * 298.31359 * 3 2 1 5 5 O 1.21275 * 119.99805 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99765 * 180.02562 * 4 3 2 7 7 H 1.09007 * 109.47279 * 299.99747 * 6 4 3 8 8 C 1.53001 * 109.47224 * 179.97438 * 6 4 3 9 9 C 1.52991 * 109.47668 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.47186 * 59.99862 * 9 8 6 11 11 C 1.53002 * 109.46829 * 300.00213 * 10 9 8 12 12 F 1.39901 * 109.46661 * 180.02562 * 11 10 9 13 13 F 1.39896 * 109.47182 * 299.99819 * 11 10 9 14 14 C 1.52997 * 109.47266 * 60.00204 * 11 10 9 15 15 C 1.55156 * 110.87469 * 123.24993 * 2 1 3 16 16 C 1.54908 * 101.58301 * 153.94031 * 15 2 1 17 17 N 1.47431 * 104.82972 * 322.98642 * 16 15 2 18 18 C 1.36932 * 125.65012 * 204.09497 * 17 16 15 19 19 H 1.07996 * 120.00600 * 169.98502 * 18 17 16 20 20 C 1.38816 * 119.99574 * 349.98867 * 18 17 16 21 21 N 1.31615 * 120.00193 * 350.41885 * 20 18 17 22 22 Si 1.86800 * 119.99656 * 170.42214 * 20 18 17 23 23 H 1.48497 * 109.47436 * 94.13861 * 22 20 18 24 24 H 1.48509 * 109.46946 * 214.13680 * 22 20 18 25 25 H 1.48502 * 109.47330 * 334.13593 * 22 20 18 26 26 C 1.47019 * 108.70346 * 24.13202 * 17 16 15 27 27 H 1.08996 * 109.47275 * 59.30154 * 1 2 3 28 28 H 1.09006 * 109.46881 * 179.29898 * 1 2 3 29 29 H 1.08998 * 109.47168 * 299.29263 * 1 2 3 30 30 H 0.97001 * 120.00107 * 118.31447 * 3 2 1 31 31 H 1.09006 * 109.47169 * 59.99757 * 8 6 4 32 32 H 1.09007 * 109.46799 * 300.00057 * 8 6 4 33 33 H 1.09007 * 109.47051 * 299.99895 * 9 8 6 34 34 H 1.09001 * 109.47334 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.47167 * 60.00209 * 10 9 8 36 36 H 1.09004 * 109.46802 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.47189 * 179.97438 * 14 11 10 38 38 H 1.08997 * 109.47198 * 59.99718 * 14 11 10 39 39 H 1.08998 * 111.00061 * 272.01273 * 15 2 1 40 40 H 1.09001 * 111.00209 * 35.85916 * 15 2 1 41 41 H 1.08996 * 110.36366 * 204.15400 * 16 15 2 42 42 H 1.08993 * 110.46065 * 81.87413 * 16 15 2 43 43 H 0.97000 * 119.99900 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.88545 * 239.52553 * 26 17 16 45 45 H 1.08996 * 109.88798 * 118.35645 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7658 2.1967 -1.0276 5 8 1.0855 1.8050 -1.9520 6 6 2.2975 3.6068 -1.0279 7 1 1.9208 4.1373 -0.1533 8 6 1.8375 4.3251 -2.2980 9 6 2.3777 5.7565 -2.2986 10 6 3.9068 5.7245 -2.2562 11 6 4.3669 5.0062 -0.9860 12 9 5.7650 4.9775 -0.9470 13 9 3.8834 5.6876 0.1361 14 6 3.8266 3.5748 -0.9855 15 6 2.0829 -0.7949 1.2124 16 6 3.4675 -1.2454 0.6837 17 7 3.2471 -1.5461 -0.7428 18 6 4.0077 -2.3899 -1.5073 19 1 3.6749 -2.6710 -2.4954 20 6 5.2067 -2.8841 -1.0120 21 7 5.7063 -2.4006 0.1055 22 14 6.1109 -4.2353 -1.9318 23 1 7.1218 -3.6286 -2.8347 24 1 6.7893 -5.1283 -0.9582 25 1 5.1406 -5.0233 -2.7335 26 6 2.0761 -0.7891 -1.2087 27 1 -0.3633 0.5246 -0.8836 28 1 -0.3633 -1.0277 -0.0126 29 1 -0.3633 0.5028 0.8962 30 1 2.5902 1.6844 0.7395 31 1 0.7481 4.3476 -2.3285 32 1 2.2146 3.7945 -3.1723 33 1 2.0010 6.2874 -1.4243 34 1 2.0496 6.2683 -3.2033 35 1 4.2835 5.1936 -3.1305 36 1 4.2917 6.7444 -2.2562 37 1 4.1547 3.0630 -0.0808 38 1 4.2033 3.0440 -1.8597 39 1 2.1887 -0.1515 2.0858 40 1 1.4515 -1.6546 1.4366 41 1 3.8032 -2.1377 1.2119 42 1 4.1969 -0.4431 0.7940 43 1 6.5443 -2.7456 0.4513 44 1 1.3140 -1.4754 -1.5781 45 1 2.3711 -0.0991 -1.9992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046613478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:36 Heat of formation + Delta-G solvation = -130.125077 kcal Electronic energy + Delta-G solvation = -28398.785045 eV Core-core repulsion = 24279.711810 eV Total energy + Delta-G solvation = -4119.073235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.07087 -47.05068 -40.25649 -38.05572 -36.65507 -34.03108 -32.37387 -31.19790 -30.05795 -29.76614 -28.68747 -25.71963 -24.47712 -23.50436 -22.89481 -21.03734 -20.43218 -19.87814 -18.98868 -17.81453 -17.01766 -16.82042 -16.49178 -16.22720 -15.57561 -15.28029 -14.67677 -14.34586 -14.29312 -14.05388 -13.81888 -13.51794 -13.38000 -13.32136 -12.99740 -12.80832 -12.74441 -12.40663 -12.27020 -12.14269 -11.79171 -11.69077 -11.60299 -11.44758 -11.04539 -10.98301 -10.92348 -10.81165 -10.60544 -10.42111 -10.38251 -10.09336 -9.98474 -9.69051 -9.25313 -8.65155 -8.57078 -6.77548 -5.74373 -3.05430 2.80431 3.35121 3.40313 3.46225 3.48385 3.63493 3.92270 4.14000 4.19115 4.50737 4.66588 4.71317 4.80903 4.93172 5.02549 5.10032 5.18323 5.26917 5.37166 5.47891 5.50128 5.54230 5.57924 5.66857 5.71980 5.73601 5.79694 5.96845 6.00715 6.12572 6.15441 6.19240 6.31264 6.42012 6.48831 6.68388 6.82953 7.13359 7.45307 7.53672 7.76812 7.82140 8.26483 8.49752 9.20918 9.82765 10.50312 11.39145 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013638 B = 0.004256 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.552884 B = 6577.887879 C = 7603.723168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 N -0.707 5.707 4 C 0.522 3.478 5 O -0.533 6.533 6 C -0.104 4.104 7 H 0.103 0.897 8 C -0.104 4.104 9 C -0.118 4.118 10 C -0.160 4.160 11 C 0.292 3.708 12 F -0.199 7.199 13 F -0.200 7.200 14 C -0.152 4.152 15 C -0.148 4.148 16 C 0.174 3.826 17 N -0.603 5.603 18 C -0.225 4.225 19 H 0.075 0.925 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.137 3.863 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.397 0.603 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.252 0.748 44 H 0.029 0.971 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.600 16.600 0.538 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.074 3.926 3 N -0.357 5.357 4 C 0.307 3.693 5 O -0.409 6.409 6 C -0.126 4.126 7 H 0.121 0.879 8 C -0.142 4.142 9 C -0.155 4.155 10 C -0.198 4.198 11 C 0.256 3.744 12 F -0.180 7.180 13 F -0.181 7.181 14 C -0.190 4.190 15 C -0.187 4.187 16 C 0.049 3.951 17 N -0.329 5.329 18 C -0.354 4.354 19 H 0.093 0.907 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.010 3.990 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.231 0.769 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.873 16.189 -0.087 18.002 hybrid contribution 1.139 -0.488 0.137 1.247 sum -6.733 15.701 0.050 17.084 Atomic orbital electron populations 1.22030 0.94289 1.02254 1.02168 1.21333 0.92922 0.80492 0.97899 1.46022 1.53699 1.12754 1.23262 1.20191 0.80377 0.86530 0.82178 1.90669 1.38757 1.76549 1.34967 1.21294 0.94608 0.94883 1.01800 0.87945 1.21430 1.01944 0.94098 0.96687 1.21538 0.92926 0.97637 1.03441 1.22559 0.98627 1.02249 0.96321 1.21025 0.75197 0.93296 0.84856 1.93030 1.30765 1.97316 1.96913 1.92982 1.87810 1.81969 1.55382 1.22511 0.95484 0.94128 1.06902 1.23346 1.01073 0.99030 0.95281 1.21387 0.89463 0.99418 0.84840 1.44478 1.30818 1.50848 1.06758 1.19024 0.99510 1.18480 0.98343 0.90733 1.24782 0.96826 1.00629 0.98133 1.69936 1.20547 1.43951 1.22337 0.86149 0.79601 0.81689 0.78622 1.21682 1.21632 1.20604 1.21599 0.90362 0.93062 0.93931 0.91020 0.91788 0.93171 0.76883 0.90213 0.90421 0.90902 0.90148 0.88526 0.89518 0.88704 0.87808 0.91778 0.90563 0.91235 0.95690 0.93788 0.95302 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.45 37.16 0.31 -1.94 16 2 C 0.16 2.76 0.81 -129.98 -0.11 2.65 16 3 N -0.71 -10.68 5.04 -45.91 -0.23 -10.91 16 4 C 0.52 7.80 6.38 -10.98 -0.07 7.73 16 5 O -0.53 -9.58 12.90 5.56 0.07 -9.50 16 6 C -0.10 -1.18 2.41 -91.77 -0.22 -1.40 16 7 H 0.10 1.00 7.80 -51.93 -0.41 0.60 16 8 C -0.10 -1.05 4.49 -26.74 -0.12 -1.17 16 9 C -0.12 -0.93 5.80 -26.73 -0.16 -1.09 16 10 C -0.16 -1.38 5.45 -26.73 -0.15 -1.53 16 11 C 0.29 3.26 2.10 -26.73 -0.06 3.21 16 12 F -0.20 -2.66 17.06 2.25 0.04 -2.62 16 13 F -0.20 -2.35 16.02 2.25 0.04 -2.31 16 14 C -0.15 -1.79 4.63 -26.73 -0.12 -1.91 16 15 C -0.15 -2.60 6.09 -24.58 -0.15 -2.75 16 16 C 0.17 4.05 5.40 -2.53 -0.01 4.04 16 17 N -0.60 -15.42 3.39 -170.07 -0.58 -16.00 16 18 C -0.23 -6.36 10.24 -15.06 -0.15 -6.52 16 19 H 0.07 2.08 7.85 -52.49 -0.41 1.67 16 20 C -0.01 -0.21 5.40 -17.43 -0.09 -0.30 16 21 N -0.92 -26.81 10.68 55.49 0.59 -26.21 16 22 Si 0.91 22.24 29.56 -169.99 -5.03 17.21 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.14 3.01 6.13 -3.06 -0.02 2.99 16 27 H 0.07 1.17 6.38 -51.93 -0.33 0.84 16 28 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.40 5.24 7.89 -40.82 -0.32 4.91 16 31 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.07 0.56 7.80 -51.93 -0.41 0.15 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.15 7.56 -51.93 -0.39 0.76 16 38 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 40 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 41 H 0.07 1.82 6.93 -51.93 -0.36 1.46 16 42 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.03 0.65 7.80 -51.93 -0.41 0.24 16 45 H 0.03 0.82 6.47 -51.93 -0.34 0.49 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -31.98 353.76 -8.01 -39.99 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.14 Total: 3.03 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.11 Total: 2.00 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.22 Total: -53.12 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.07 Total: -4.93 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.98 -8.01 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046613478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.137 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds